Wall clock time and date at job start Tue Mar 31 2020 22:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47205 * 179.97438 * 10 9 7 12 12 H 1.08995 * 110.88800 * 302.57941 * 11 10 9 13 13 C 1.55156 * 111.00983 * 178.64956 * 11 10 9 14 14 C 1.54317 * 102.94471 * 206.42770 * 13 11 10 15 15 N 1.47022 * 107.27514 * 22.19305 * 14 13 11 16 16 C 1.34770 * 125.65163 * 181.02456 * 15 14 13 17 17 O 1.21735 * 120.00083 * 180.02562 * 16 15 14 18 18 C 1.46396 * 120.00339 * 0.03938 * 16 15 14 19 19 N 1.37634 * 126.32056 * 359.69176 * 18 16 15 20 20 H 0.96990 * 125.55242 * 359.97438 * 19 18 16 21 21 C 1.35645 * 108.89605 * 179.88555 * 19 18 16 22 22 C 1.35126 * 109.22075 * 0.37996 * 21 19 18 23 23 C 1.39089 * 126.33132 * 180.02562 * 18 16 15 24 24 C 1.48181 * 126.63159 * 359.93046 * 23 18 16 25 25 C 1.39453 * 120.13117 * 309.72460 * 24 23 18 26 26 C 1.37985 * 119.86312 * 179.74412 * 25 24 23 27 27 C 1.38350 * 120.13542 * 0.51200 * 26 25 24 28 28 C 1.38344 * 120.25915 * 359.76442 * 27 26 25 29 29 C 1.37980 * 120.13630 * 359.97438 * 28 27 26 30 30 C 1.47430 * 108.70052 * 1.05818 * 15 14 13 31 31 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 32 32 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 33 33 H 1.08997 * 109.47963 * 300.00084 * 10 9 7 34 34 H 1.09000 * 109.47287 * 60.00394 * 10 9 7 35 35 H 1.09004 * 110.71807 * 324.79353 * 13 11 10 36 36 H 1.09005 * 110.71781 * 88.06061 * 13 11 10 37 37 H 1.09000 * 109.88095 * 262.77886 * 14 13 11 38 38 H 1.09003 * 110.01129 * 141.68081 * 14 13 11 39 39 H 1.08000 * 125.38960 * 180.12548 * 21 19 18 40 40 H 1.08002 * 126.10151 * 179.76442 * 22 21 19 41 41 H 1.07991 * 120.06525 * 359.97438 * 25 24 23 42 42 H 1.07996 * 119.93494 * 180.22869 * 26 25 24 43 43 H 1.07990 * 119.86853 * 179.74532 * 27 26 25 44 44 H 1.08005 * 119.92912 * 180.02562 * 28 27 26 45 45 H 1.08003 * 120.07190 * 179.97438 * 29 28 27 46 46 H 1.09000 * 110.37078 * 217.03403 * 30 15 14 47 47 H 1.09003 * 110.45837 * 94.75719 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.3951 -4.7586 0.8595 13 6 1.8033 -6.1834 -0.0329 14 6 0.7719 -7.1192 -0.6977 15 7 -0.1563 -6.2731 -1.4620 16 6 -1.2152 -6.7108 -2.1716 17 8 -1.9181 -5.9163 -2.7688 18 6 -1.5204 -8.1416 -2.2240 19 7 -0.8142 -9.1489 -1.6068 20 1 -0.0229 -9.0290 -1.0589 21 6 -1.4063 -10.3365 -1.8879 22 6 -2.4782 -10.1221 -2.6822 23 6 -2.5736 -8.7349 -2.9120 24 6 -3.5984 -8.0422 -3.7279 25 6 -4.2904 -6.9509 -3.2036 26 6 -5.2398 -6.3067 -3.9701 27 6 -5.5134 -6.7480 -5.2525 28 6 -4.8342 -7.8336 -5.7759 29 6 -3.8788 -8.4826 -5.0210 30 6 0.2636 -4.8666 -1.3243 31 1 -0.4850 0.8401 0.0004 32 1 0.3557 -2.3880 0.0005 33 1 2.6849 -3.7145 -0.8894 34 1 2.6848 -3.7144 0.8905 35 1 2.7085 -6.1164 -0.6365 36 1 2.0360 -6.5213 0.9770 37 1 0.2257 -7.6717 0.0668 38 1 1.2769 -7.8147 -1.3680 39 1 -1.0715 -11.3011 -1.5361 40 1 -3.1431 -10.8789 -3.0718 41 1 -4.0809 -6.6084 -2.2011 42 1 -5.7738 -5.4591 -3.5665 43 1 -6.2603 -6.2431 -5.8471 44 1 -5.0518 -8.1734 -6.7778 45 1 -3.3495 -9.3303 -5.4305 46 1 -0.6078 -4.2146 -1.2645 47 1 0.8982 -4.5748 -2.1612 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491848592.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:55 Heat of formation + Delta-G solvation = 37.252332 kcal Electronic energy + Delta-G solvation = -28625.474390 eV Core-core repulsion = 24773.322001 eV Total energy + Delta-G solvation = -3852.152389 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.47781 -40.63349 -39.65761 -38.75133 -36.50926 -34.16417 -33.43391 -32.17883 -31.77943 -31.11130 -29.94564 -29.60758 -27.16405 -25.51380 -24.13452 -23.44707 -23.38771 -22.33606 -21.65726 -21.31441 -20.26954 -19.32999 -18.68852 -17.62325 -17.47196 -17.12578 -16.63493 -16.38795 -15.97985 -15.86868 -15.50563 -15.31532 -15.13201 -14.93708 -14.69491 -14.48486 -14.23874 -14.08080 -13.92397 -13.79798 -13.66599 -13.46306 -13.17926 -13.15273 -13.01069 -12.76647 -12.29829 -12.17340 -12.02586 -11.93859 -11.90847 -11.70082 -11.65182 -11.24469 -10.96055 -10.31126 -9.87578 -9.73030 -9.41887 -9.02621 -8.96133 -7.96658 -5.26464 0.04777 0.58752 0.73851 1.45260 1.47697 1.56067 1.75942 1.80844 2.21474 2.25425 2.54259 2.99367 3.31715 3.38350 3.49224 3.72054 3.83155 3.91703 4.08570 4.08997 4.15787 4.16463 4.24171 4.30896 4.33922 4.41185 4.46707 4.55694 4.65612 4.72136 4.75844 4.78040 4.79638 4.95158 4.97464 5.09649 5.14861 5.16579 5.21495 5.25719 5.35936 5.47916 5.54200 5.65578 5.69525 5.77248 5.90243 6.17036 6.24725 6.38943 6.52248 7.01723 7.30720 8.06922 8.28003 9.26985 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012564 B = 0.002699 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.044257 B =10372.405388 C =12322.894171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.975 3.025 4 H -0.284 1.284 5 H -0.267 1.267 6 H -0.299 1.299 7 C -0.244 4.244 8 H 0.081 0.919 9 N -0.750 5.750 10 C 0.163 3.837 11 C -0.097 4.097 12 H 0.077 0.923 13 C -0.108 4.108 14 C 0.084 3.916 15 N -0.620 5.620 16 C 0.585 3.415 17 O -0.565 6.565 18 C -0.065 4.065 19 N -0.529 5.529 20 H 0.431 0.569 21 C 0.054 3.946 22 C -0.212 4.212 23 C -0.062 4.062 24 C -0.036 4.036 25 C -0.089 4.089 26 C -0.143 4.143 27 C -0.126 4.126 28 C -0.129 4.129 29 C -0.112 4.112 30 C 0.124 3.876 31 H 0.250 0.750 32 H 0.371 0.629 33 H 0.026 0.974 34 H 0.038 0.962 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.224 0.776 40 H 0.164 0.836 41 H 0.092 0.908 42 H 0.122 0.878 43 H 0.142 0.858 44 H 0.151 0.849 45 H 0.140 0.860 46 H 0.041 0.959 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.139 -29.558 -4.552 29.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.804 3.196 4 H -0.211 1.211 5 H -0.192 1.192 6 H -0.226 1.226 7 C -0.376 4.376 8 H 0.098 0.902 9 N -0.392 5.392 10 C 0.037 3.963 11 C -0.116 4.116 12 H 0.096 0.904 13 C -0.146 4.146 14 C -0.037 4.037 15 N -0.354 5.354 16 C 0.376 3.624 17 O -0.444 6.444 18 C -0.179 4.179 19 N -0.130 5.130 20 H 0.276 0.724 21 C -0.083 4.083 22 C -0.235 4.235 23 C -0.071 4.071 24 C -0.037 4.037 25 C -0.108 4.108 26 C -0.161 4.161 27 C -0.144 4.144 28 C -0.147 4.147 29 C -0.130 4.130 30 C 0.001 3.999 31 H 0.059 0.941 32 H 0.202 0.798 33 H 0.044 0.956 34 H 0.056 0.944 35 H 0.112 0.888 36 H 0.136 0.864 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.240 0.760 40 H 0.181 0.819 41 H 0.111 0.889 42 H 0.140 0.860 43 H 0.160 0.840 44 H 0.168 0.832 45 H 0.158 0.842 46 H 0.059 0.941 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.212 -29.011 -4.797 29.488 hybrid contribution 0.023 1.941 0.308 1.965 sum -2.190 -27.070 -4.490 27.527 Atomic orbital electron populations 1.69844 1.06826 1.26050 1.59572 1.25637 0.96362 1.01400 1.03762 0.85111 0.77682 0.79280 0.77518 1.21135 1.19163 1.22562 1.19665 0.91630 0.85258 1.41055 0.90158 1.42641 1.05605 1.01480 1.89484 1.20773 0.93275 0.83678 0.98569 1.22417 0.97240 0.96201 0.95756 0.90435 1.22661 0.97310 0.91002 1.03596 1.22532 0.91216 0.94517 0.95460 1.48539 1.28058 1.08906 1.49849 1.17175 0.79526 0.87101 0.78587 1.90889 1.50394 1.56567 1.46540 1.19987 1.00926 0.87252 1.09724 1.42594 1.25030 1.05660 1.39740 0.72385 1.22732 0.94904 0.90555 1.00069 1.21197 1.02430 0.93528 1.06324 1.18871 0.94482 0.94465 0.99285 1.18383 0.95319 0.95614 0.94391 1.21081 0.95342 0.94863 0.99473 1.21262 0.98835 1.00237 0.95747 1.21468 1.00472 0.97356 0.95105 1.21378 0.96383 0.96112 1.00798 1.21393 0.98248 1.00632 0.92715 1.22034 0.97871 0.81837 0.98171 0.94118 0.79755 0.95641 0.94422 0.88776 0.86417 0.89209 0.88721 0.75970 0.81889 0.88927 0.85973 0.84000 0.83165 0.84171 0.94070 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.78 13.06 21.65 0.28 -61.49 16 2 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 3 Si 0.98 47.06 29.55 68.60 2.03 49.08 16 4 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 6 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 7 C -0.24 -13.79 9.99 84.03 0.84 -12.95 16 8 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 9 N -0.75 -38.50 5.45 -343.47 -1.87 -40.37 16 10 C 0.16 6.15 5.71 86.38 0.49 6.64 16 11 C -0.10 -2.88 3.11 -9.40 -0.03 -2.90 16 12 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 13 C -0.11 -1.87 6.42 31.78 0.20 -1.66 16 14 C 0.08 1.40 5.11 86.73 0.44 1.84 16 15 N -0.62 -17.90 3.33 -816.78 -2.72 -20.62 16 16 C 0.58 19.66 7.79 86.37 0.67 20.33 16 17 O -0.56 -24.25 13.68 -4.46 -0.06 -24.31 16 18 C -0.07 -1.70 6.91 40.56 0.28 -1.42 16 19 N -0.53 -7.84 5.61 -183.14 -1.03 -8.87 16 20 H 0.43 3.85 4.91 -92.72 -0.46 3.39 16 21 C 0.05 0.58 11.86 83.39 0.99 1.56 16 22 C -0.21 -3.55 10.73 22.21 0.24 -3.31 16 23 C -0.06 -1.59 5.67 -19.77 -0.11 -1.70 16 24 C -0.04 -1.06 5.27 -20.05 -0.11 -1.17 16 25 C -0.09 -2.92 7.63 22.50 0.17 -2.75 16 26 C -0.14 -4.16 10.03 22.24 0.22 -3.94 16 27 C -0.13 -3.01 10.04 22.32 0.22 -2.79 16 28 C -0.13 -2.80 10.03 22.23 0.22 -2.58 16 29 C -0.11 -2.68 9.74 22.50 0.22 -2.46 16 30 C 0.12 4.36 6.08 86.86 0.53 4.89 16 31 H 0.25 15.45 8.31 -92.71 -0.77 14.67 16 32 H 0.37 20.82 7.53 -92.71 -0.70 20.12 16 33 H 0.03 0.96 8.10 -2.39 -0.02 0.94 16 34 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.09 1.48 8.04 -2.39 -0.02 1.46 16 36 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.09 1.07 7.11 -2.39 -0.02 1.05 16 38 H 0.09 1.05 7.21 -2.39 -0.02 1.04 16 39 H 0.22 0.08 8.06 -2.91 -0.02 0.06 16 40 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 41 H 0.09 3.39 7.36 -2.92 -0.02 3.37 16 42 H 0.12 3.28 8.06 -2.91 -0.02 3.26 16 43 H 0.14 2.57 8.06 -2.92 -0.02 2.54 16 44 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 45 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 46 H 0.04 1.79 8.04 -2.39 -0.02 1.77 16 47 H 0.06 2.15 8.00 -2.39 -0.02 2.13 16 Total: -1.00 -83.60 384.83 2.44 -81.16 By element: Atomic # 1 Polarization: 34.17 SS G_CDS: -0.16 Total: 34.01 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 5.97 Total: -8.59 kcal Atomic # 7 Polarization: -126.02 SS G_CDS: -5.33 Total: -131.35 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.06 Total: -24.31 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.08 kcal Total: -83.60 2.44 -81.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491848592.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.410 kcal (2) G-P(sol) polarization free energy of solvation -83.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds