Wall clock time and date at job start Tue Mar 31 2020 22:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00140 * 2 1 4 4 H 1.48498 * 109.47336 * 240.00244 * 3 2 1 5 5 H 1.48498 * 109.47085 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46873 * 120.00038 * 3 2 1 7 7 C 1.38808 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99917 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00064 * 359.97438 * 7 2 1 10 10 C 1.46508 * 119.99805 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46807 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.91988 * 51.09511 * 11 10 9 13 13 C 1.55157 * 111.00230 * 175.00251 * 11 10 9 14 14 C 1.54321 * 103.10033 * 153.66249 * 13 11 10 15 15 N 1.47019 * 107.27531 * 337.71659 * 14 13 11 16 16 C 1.34777 * 125.65068 * 178.90607 * 15 14 13 17 17 O 1.21727 * 120.00009 * 180.02562 * 16 15 14 18 18 C 1.46396 * 119.99706 * 0.02562 * 16 15 14 19 19 N 1.37626 * 126.33233 * 0.02562 * 18 16 15 20 20 H 0.97009 * 125.54626 * 359.97438 * 19 18 16 21 21 C 1.35635 * 108.90289 * 179.97438 * 19 18 16 22 22 C 1.35124 * 109.22197 * 0.02562 * 21 19 18 23 23 C 1.39100 * 126.32347 * 179.71588 * 18 16 15 24 24 C 1.48182 * 126.63497 * 0.03429 * 23 18 16 25 25 C 1.39449 * 120.12676 * 309.72605 * 24 23 18 26 26 C 1.37997 * 119.86029 * 179.74506 * 25 24 23 27 27 C 1.38339 * 120.13287 * 0.55564 * 26 25 24 28 28 C 1.38345 * 120.26395 * 359.69538 * 27 26 25 29 29 C 1.37988 * 120.13380 * 0.02567 * 28 27 26 30 30 C 1.47431 * 108.70142 * 358.94050 * 15 14 13 31 31 H 0.96998 * 119.99684 * 359.97438 * 1 2 3 32 32 H 0.96996 * 119.99873 * 0.02562 * 9 7 2 33 33 H 1.08995 * 109.46564 * 60.00176 * 10 9 7 34 34 H 1.08993 * 109.47195 * 300.00058 * 10 9 7 35 35 H 1.09002 * 110.72219 * 35.20946 * 13 11 10 36 36 H 1.09003 * 110.71618 * 272.11558 * 13 11 10 37 37 H 1.09001 * 109.88480 * 97.13771 * 14 13 11 38 38 H 1.09004 * 109.87910 * 218.29695 * 14 13 11 39 39 H 1.08001 * 125.39257 * 179.97438 * 21 19 18 40 40 H 1.07999 * 126.10255 * 180.02562 * 22 21 19 41 41 H 1.07998 * 120.07138 * 359.97438 * 25 24 23 42 42 H 1.07995 * 119.93239 * 180.29355 * 26 25 24 43 43 H 1.08003 * 119.86777 * 179.72166 * 27 26 25 44 44 H 1.08000 * 119.92911 * 180.02562 * 28 27 26 45 45 H 1.08004 * 120.06557 * 179.97438 * 29 28 27 46 46 H 1.08999 * 110.36190 * 142.96411 * 30 15 14 47 47 H 1.08998 * 110.36491 * 265.18090 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3252 -4.6998 -0.7938 13 6 1.7992 -6.1801 -0.1274 14 6 0.8261 -7.1679 0.5499 15 7 -0.0332 -6.3858 1.4507 16 6 -1.0301 -6.8803 2.2111 17 8 -1.6796 -6.1360 2.9224 18 6 -1.3318 -8.3125 2.1816 19 7 -0.6845 -9.2668 1.4303 20 1 0.0555 -9.1018 0.8251 21 6 -1.2495 -10.4756 1.6739 22 6 -2.2516 -10.3261 2.5680 23 6 -2.3218 -8.9613 2.9123 24 6 -3.2697 -8.3374 3.8652 25 6 -2.7980 -7.4940 4.8706 26 6 -3.6861 -6.9117 5.7518 27 6 -5.0406 -7.1723 5.6464 28 6 -5.5139 -8.0123 4.6542 29 6 -4.6362 -8.5958 3.7636 30 6 0.3756 -4.9709 1.3838 31 1 -0.4849 0.8401 0.0004 32 1 0.3556 -2.3880 -0.0005 33 1 2.6846 -3.7145 0.8894 34 1 2.6847 -3.7146 -0.8905 35 1 2.7521 -6.1539 0.4012 36 1 1.9479 -6.4423 -1.1749 37 1 0.2168 -7.6646 -0.2051 38 1 1.3869 -7.9073 1.1218 39 1 -0.9471 -11.4096 1.2238 40 1 -2.8826 -11.1130 2.9540 41 1 -1.7402 -7.2940 4.9572 42 1 -3.3225 -6.2547 6.5279 43 1 -5.7315 -6.7179 6.3411 44 1 -6.5725 -8.2117 4.5766 45 1 -5.0068 -9.2518 2.9898 46 1 -0.4969 -4.3207 1.4464 47 1 1.0778 -4.7407 2.1850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491848594.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:59 Heat of formation + Delta-G solvation = 59.151437 kcal Electronic energy + Delta-G solvation = -28572.847164 eV Core-core repulsion = 24721.644391 eV Total energy + Delta-G solvation = -3851.202773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.63718 -39.54478 -38.72919 -37.51333 -34.76727 -32.85499 -32.20669 -30.83582 -30.58919 -30.24305 -28.83399 -28.54431 -25.61286 -24.08830 -22.88411 -22.46626 -22.14949 -21.38190 -20.80724 -20.09769 -19.39011 -17.96957 -17.04080 -16.59858 -16.36106 -16.11597 -15.41554 -15.05394 -14.84166 -14.68319 -14.43498 -14.06427 -13.77544 -13.71493 -13.39688 -13.27750 -13.20754 -13.08750 -12.90642 -12.74355 -12.52978 -12.33116 -12.19900 -11.91009 -11.35851 -11.12051 -10.97870 -10.88361 -10.71947 -10.65367 -10.52591 -10.11242 -10.02249 -9.69989 -9.44387 -8.89162 -8.78124 -8.75614 -8.60223 -8.05215 -6.94901 -5.76549 -3.06561 1.00488 1.56506 1.64434 2.54809 2.76451 3.00667 3.30869 3.44046 3.48258 3.49822 3.95800 4.34084 4.42581 4.56052 4.65217 4.70670 4.77032 4.90015 5.00379 5.08300 5.08920 5.19226 5.21816 5.22611 5.47123 5.52116 5.57136 5.58959 5.66936 5.74919 5.84299 5.86452 5.90906 6.04917 6.08357 6.16142 6.17428 6.31226 6.32883 6.39899 6.54409 6.62719 6.63565 6.67616 6.75818 6.79801 7.09938 7.12218 7.46261 7.68049 8.15009 8.41372 9.52578 10.08830 10.43088 11.45926 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012710 B = 0.002637 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.509609 B =10616.369077 C =12464.863045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.166 3.834 11 C -0.105 4.105 12 H 0.086 0.914 13 C -0.123 4.123 14 C 0.089 3.911 15 N -0.619 5.619 16 C 0.595 3.405 17 O -0.511 6.511 18 C -0.032 4.032 19 N -0.542 5.542 20 H 0.419 0.581 21 C 0.017 3.983 22 C -0.195 4.195 23 C -0.045 4.045 24 C -0.019 4.019 25 C -0.064 4.064 26 C -0.124 4.124 27 C -0.120 4.120 28 C -0.130 4.130 29 C -0.106 4.106 30 C 0.118 3.882 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.022 0.978 34 H 0.024 0.976 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.172 0.828 40 H 0.145 0.855 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.086 0.914 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.620 -26.107 4.603 26.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.038 3.962 11 C -0.124 4.124 12 H 0.105 0.895 13 C -0.161 4.161 14 C -0.034 4.034 15 N -0.354 5.354 16 C 0.384 3.616 17 O -0.386 6.386 18 C -0.146 4.146 19 N -0.143 5.143 20 H 0.261 0.739 21 C -0.118 4.118 22 C -0.219 4.219 23 C -0.054 4.054 24 C -0.019 4.019 25 C -0.082 4.082 26 C -0.142 4.142 27 C -0.139 4.139 28 C -0.148 4.148 29 C -0.124 4.124 30 C -0.004 4.004 31 H 0.066 0.934 32 H 0.218 0.782 33 H 0.040 0.960 34 H 0.042 0.958 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.189 0.811 40 H 0.162 0.838 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.105 0.895 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.765 -25.523 4.932 26.266 hybrid contribution 0.576 0.905 -0.483 1.177 sum -3.188 -24.618 4.449 25.219 Atomic orbital electron populations 1.69652 1.05116 1.25880 1.57261 1.24758 0.95518 0.97742 1.02794 0.86263 0.78520 0.83533 0.77815 1.21274 1.21655 1.21239 1.19151 0.90964 0.84113 1.43307 0.91219 1.42356 1.05901 0.99885 1.89581 1.20568 0.92652 0.84789 0.98223 1.22686 0.98478 0.94562 0.96690 0.89531 1.22635 0.98086 0.94247 1.01174 1.22201 0.92952 0.95553 0.92716 1.48504 1.33186 1.10359 1.43370 1.16636 0.79411 0.85471 0.80085 1.90925 1.49229 1.58218 1.40203 1.20461 1.01424 0.89147 1.03577 1.42643 1.29079 1.07007 1.35556 0.73862 1.21926 0.98220 0.89086 1.02582 1.20892 1.02300 0.95581 1.03145 1.18561 0.95933 0.92766 0.98162 1.18071 0.91888 0.97543 0.94419 1.21115 0.99821 0.94155 0.93139 1.21046 0.93394 0.99991 0.99750 1.21146 0.95579 0.98550 0.98576 1.20965 0.99239 0.98576 0.96018 1.21093 0.92160 1.00121 0.99009 1.22448 1.00318 0.80143 0.97464 0.93367 0.78172 0.95994 0.95776 0.89952 0.89713 0.91769 0.91729 0.81099 0.83768 0.86366 0.86250 0.86474 0.86346 0.86312 0.89547 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.44 13.06 55.49 0.72 -27.72 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.73 -18.28 5.56 -59.91 -0.33 -18.62 16 10 C 0.17 3.13 5.73 -4.04 -0.02 3.11 16 11 C -0.10 -1.57 3.07 -88.21 -0.27 -1.84 16 12 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 13 C -0.12 -1.26 6.40 -24.90 -0.16 -1.42 16 14 C 0.09 0.86 5.11 -3.07 -0.02 0.84 16 15 N -0.62 -8.66 3.33 -171.85 -0.57 -9.23 16 16 C 0.59 9.36 7.79 -12.98 -0.10 9.26 16 17 O -0.51 -9.79 13.69 5.17 0.07 -9.72 16 18 C -0.03 -0.42 6.91 -81.66 -0.56 -0.98 16 19 N -0.54 -4.88 5.61 -9.24 -0.05 -4.93 16 20 H 0.42 2.77 4.92 -40.82 -0.20 2.57 16 21 C 0.02 0.13 11.86 -16.98 -0.20 -0.07 16 22 C -0.20 -1.89 10.73 -39.67 -0.43 -2.32 16 23 C -0.05 -0.59 5.67 -104.47 -0.59 -1.18 16 24 C -0.02 -0.26 5.27 -104.91 -0.55 -0.81 16 25 C -0.06 -0.93 7.63 -39.22 -0.30 -1.23 16 26 C -0.12 -1.61 10.03 -39.63 -0.40 -2.01 16 27 C -0.12 -1.41 10.04 -39.50 -0.40 -1.81 16 28 C -0.13 -1.47 10.03 -39.63 -0.40 -1.87 16 29 C -0.11 -1.29 9.73 -39.22 -0.38 -1.67 16 30 C 0.12 1.91 6.35 -2.26 -0.01 1.90 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.38 10.21 7.67 -40.82 -0.31 9.90 16 33 H 0.02 0.42 7.98 -51.93 -0.41 0.01 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.79 8.04 -51.93 -0.42 0.38 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.51 7.09 -51.93 -0.37 0.15 16 38 H 0.06 0.49 7.24 -51.93 -0.38 0.11 16 39 H 0.17 0.64 8.06 -52.49 -0.42 0.21 16 40 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 41 H 0.12 1.79 7.36 -52.49 -0.39 1.40 16 42 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 43 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 44 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 45 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 46 H 0.09 1.66 8.04 -51.93 -0.42 1.24 16 47 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 LS Contribution 385.12 15.07 5.80 5.80 Total: -1.00 -34.83 385.12 -11.08 -45.91 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -6.66 Total: 10.54 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -5.04 Total: -9.50 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: -0.23 Total: -60.49 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.07 Total: -9.72 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.83 -11.08 -45.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491848594.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.057 kcal (2) G-P(sol) polarization free energy of solvation -34.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds