Wall clock time and date at job start Tue Mar 31 2020 22:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00140 * 2 1 4 4 H 1.48498 * 109.47336 * 240.00244 * 3 2 1 5 5 H 1.48498 * 109.47085 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46873 * 120.00038 * 3 2 1 7 7 C 1.38808 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99917 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00064 * 359.97438 * 7 2 1 10 10 C 1.46508 * 119.99805 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46807 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.91988 * 51.09511 * 11 10 9 13 13 C 1.55157 * 111.00230 * 175.00251 * 11 10 9 14 14 C 1.54321 * 103.10033 * 153.66249 * 13 11 10 15 15 N 1.47019 * 107.27531 * 337.71659 * 14 13 11 16 16 C 1.34777 * 125.65068 * 178.90607 * 15 14 13 17 17 O 1.21727 * 120.00009 * 180.02562 * 16 15 14 18 18 C 1.46396 * 119.99706 * 0.02562 * 16 15 14 19 19 N 1.37626 * 126.33233 * 0.02562 * 18 16 15 20 20 H 0.97009 * 125.54626 * 359.97438 * 19 18 16 21 21 C 1.35635 * 108.90289 * 179.97438 * 19 18 16 22 22 C 1.35124 * 109.22197 * 0.02562 * 21 19 18 23 23 C 1.39100 * 126.32347 * 179.71588 * 18 16 15 24 24 C 1.48182 * 126.63497 * 0.03429 * 23 18 16 25 25 C 1.39449 * 120.12676 * 309.72605 * 24 23 18 26 26 C 1.37997 * 119.86029 * 179.74506 * 25 24 23 27 27 C 1.38339 * 120.13287 * 0.55564 * 26 25 24 28 28 C 1.38345 * 120.26395 * 359.69538 * 27 26 25 29 29 C 1.37988 * 120.13380 * 0.02567 * 28 27 26 30 30 C 1.47431 * 108.70142 * 358.94050 * 15 14 13 31 31 H 0.96998 * 119.99684 * 359.97438 * 1 2 3 32 32 H 0.96996 * 119.99873 * 0.02562 * 9 7 2 33 33 H 1.08995 * 109.46564 * 60.00176 * 10 9 7 34 34 H 1.08993 * 109.47195 * 300.00058 * 10 9 7 35 35 H 1.09002 * 110.72219 * 35.20946 * 13 11 10 36 36 H 1.09003 * 110.71618 * 272.11558 * 13 11 10 37 37 H 1.09001 * 109.88480 * 97.13771 * 14 13 11 38 38 H 1.09004 * 109.87910 * 218.29695 * 14 13 11 39 39 H 1.08001 * 125.39257 * 179.97438 * 21 19 18 40 40 H 1.07999 * 126.10255 * 180.02562 * 22 21 19 41 41 H 1.07998 * 120.07138 * 359.97438 * 25 24 23 42 42 H 1.07995 * 119.93239 * 180.29355 * 26 25 24 43 43 H 1.08003 * 119.86777 * 179.72166 * 27 26 25 44 44 H 1.08000 * 119.92911 * 180.02562 * 28 27 26 45 45 H 1.08004 * 120.06557 * 179.97438 * 29 28 27 46 46 H 1.08999 * 110.36190 * 142.96411 * 30 15 14 47 47 H 1.08998 * 110.36491 * 265.18090 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3252 -4.6998 -0.7938 13 6 1.7992 -6.1801 -0.1274 14 6 0.8261 -7.1679 0.5499 15 7 -0.0332 -6.3858 1.4507 16 6 -1.0301 -6.8803 2.2111 17 8 -1.6796 -6.1360 2.9224 18 6 -1.3318 -8.3125 2.1816 19 7 -0.6845 -9.2668 1.4303 20 1 0.0555 -9.1018 0.8251 21 6 -1.2495 -10.4756 1.6739 22 6 -2.2516 -10.3261 2.5680 23 6 -2.3218 -8.9613 2.9123 24 6 -3.2697 -8.3374 3.8652 25 6 -2.7980 -7.4940 4.8706 26 6 -3.6861 -6.9117 5.7518 27 6 -5.0406 -7.1723 5.6464 28 6 -5.5139 -8.0123 4.6542 29 6 -4.6362 -8.5958 3.7636 30 6 0.3756 -4.9709 1.3838 31 1 -0.4849 0.8401 0.0004 32 1 0.3556 -2.3880 -0.0005 33 1 2.6846 -3.7145 0.8894 34 1 2.6847 -3.7146 -0.8905 35 1 2.7521 -6.1539 0.4012 36 1 1.9479 -6.4423 -1.1749 37 1 0.2168 -7.6646 -0.2051 38 1 1.3869 -7.9073 1.1218 39 1 -0.9471 -11.4096 1.2238 40 1 -2.8826 -11.1130 2.9540 41 1 -1.7402 -7.2940 4.9572 42 1 -3.3225 -6.2547 6.5279 43 1 -5.7315 -6.7179 6.3411 44 1 -6.5725 -8.2117 4.5766 45 1 -5.0068 -9.2518 2.9898 46 1 -0.4969 -4.3207 1.4464 47 1 1.0778 -4.7407 2.1850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491848594.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:58 Heat of formation + Delta-G solvation = 37.396177 kcal Electronic energy + Delta-G solvation = -28573.790543 eV Core-core repulsion = 24721.644391 eV Total energy + Delta-G solvation = -3852.146151 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.47664 -40.61835 -39.65520 -38.73638 -36.50849 -34.15946 -33.43327 -32.17830 -31.77810 -31.10961 -29.94790 -29.60603 -27.16084 -25.49436 -24.11693 -23.45572 -23.38815 -22.32773 -21.66219 -21.35080 -20.26863 -19.31161 -18.69496 -17.61816 -17.44614 -17.14580 -16.61709 -16.43907 -15.97490 -15.70587 -15.62556 -15.33274 -15.11816 -14.91425 -14.68172 -14.47763 -14.25843 -14.09994 -13.90833 -13.77795 -13.66558 -13.50451 -13.17286 -13.12830 -13.01907 -12.73850 -12.33676 -12.15656 -12.02374 -11.93898 -11.91034 -11.70271 -11.66112 -11.24668 -10.94605 -10.30883 -9.87488 -9.72845 -9.42145 -9.02427 -8.95889 -7.96344 -5.26129 0.04757 0.58962 0.74080 1.45432 1.49149 1.55283 1.75914 1.80573 2.21410 2.25548 2.54700 2.99544 3.30930 3.38916 3.49376 3.72315 3.82316 3.91768 4.08242 4.08909 4.15575 4.15916 4.24134 4.30899 4.33849 4.41226 4.47141 4.56412 4.65760 4.72747 4.75864 4.77639 4.79174 4.94738 4.96932 5.09169 5.14863 5.17390 5.21607 5.25683 5.35679 5.47950 5.54222 5.65654 5.69313 5.77383 5.90170 6.17154 6.24952 6.38684 6.52047 7.01509 7.30946 8.07183 8.28422 9.27143 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012710 B = 0.002637 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.509609 B =10616.369077 C =12464.863045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.976 3.024 4 H -0.273 1.273 5 H -0.298 1.298 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.080 0.920 9 N -0.749 5.749 10 C 0.164 3.836 11 C -0.096 4.096 12 H 0.075 0.925 13 C -0.108 4.108 14 C 0.085 3.915 15 N -0.620 5.620 16 C 0.585 3.415 17 O -0.564 6.564 18 C -0.065 4.065 19 N -0.529 5.529 20 H 0.431 0.569 21 C 0.053 3.947 22 C -0.212 4.212 23 C -0.062 4.062 24 C -0.037 4.037 25 C -0.088 4.088 26 C -0.142 4.142 27 C -0.127 4.127 28 C -0.130 4.130 29 C -0.113 4.113 30 C 0.122 3.878 31 H 0.250 0.750 32 H 0.371 0.629 33 H 0.025 0.975 34 H 0.038 0.962 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.224 0.776 40 H 0.163 0.837 41 H 0.096 0.904 42 H 0.125 0.875 43 H 0.142 0.858 44 H 0.149 0.851 45 H 0.139 0.861 46 H 0.040 0.960 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.410 -29.592 3.114 29.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.804 3.196 4 H -0.199 1.199 5 H -0.224 1.224 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.098 0.902 9 N -0.392 5.392 10 C 0.038 3.962 11 C -0.116 4.116 12 H 0.094 0.906 13 C -0.146 4.146 14 C -0.037 4.037 15 N -0.353 5.353 16 C 0.377 3.623 17 O -0.443 6.443 18 C -0.179 4.179 19 N -0.130 5.130 20 H 0.276 0.724 21 C -0.083 4.083 22 C -0.235 4.235 23 C -0.071 4.071 24 C -0.038 4.038 25 C -0.106 4.106 26 C -0.160 4.160 27 C -0.145 4.145 28 C -0.148 4.148 29 C -0.131 4.131 30 C 0.000 4.000 31 H 0.059 0.941 32 H 0.202 0.798 33 H 0.043 0.957 34 H 0.056 0.944 35 H 0.113 0.887 36 H 0.134 0.866 37 H 0.107 0.893 38 H 0.114 0.886 39 H 0.240 0.760 40 H 0.181 0.819 41 H 0.114 0.886 42 H 0.143 0.857 43 H 0.160 0.840 44 H 0.167 0.833 45 H 0.156 0.844 46 H 0.059 0.941 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.468 -29.062 3.406 29.365 hybrid contribution 0.213 1.862 0.000 1.874 sum -2.256 -27.200 3.407 27.505 Atomic orbital electron populations 1.69835 1.06821 1.26143 1.59489 1.25636 0.96361 1.01396 1.03715 0.85180 0.77140 0.78943 0.78315 1.19925 1.22419 1.20415 1.19633 0.91627 0.85285 1.41229 0.90190 1.42637 1.05578 1.01464 1.89503 1.20761 0.93262 0.83665 0.98551 1.22489 0.97866 0.96101 0.95130 0.90609 1.22655 0.97952 0.90556 1.03479 1.22529 0.92779 0.95530 0.92858 1.48528 1.33442 1.09625 1.43751 1.17159 0.79046 0.86683 0.79441 1.90883 1.51201 1.59801 1.42458 1.19990 1.03391 0.88187 1.06319 1.42596 1.28961 1.06588 1.34882 0.72384 1.22725 0.95761 0.89777 1.00022 1.21195 1.03787 0.94367 1.04158 1.18873 0.95782 0.94520 0.97930 1.18386 0.93201 0.97652 0.94528 1.21089 0.99063 0.95771 0.94725 1.21269 0.94338 1.00367 1.00005 1.21472 0.95189 0.98565 0.99233 1.21375 1.00703 0.97563 0.95148 1.21392 0.91615 1.00454 0.99676 1.22158 0.98250 0.81429 0.98197 0.94094 0.79769 0.95706 0.94367 0.88686 0.86620 0.89301 0.88625 0.76003 0.81930 0.88615 0.85711 0.84006 0.83325 0.84359 0.94094 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.62 13.06 21.65 0.28 -61.34 16 2 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 3 Si 0.98 46.93 29.55 68.60 2.03 48.96 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 7 C -0.25 -13.87 9.99 84.03 0.84 -13.03 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.75 -38.46 5.56 -343.45 -1.91 -40.36 16 10 C 0.16 6.17 5.73 86.38 0.49 6.67 16 11 C -0.10 -2.87 3.07 -9.23 -0.03 -2.90 16 12 H 0.08 2.44 8.14 -2.39 -0.02 2.43 16 13 C -0.11 -1.89 6.40 31.78 0.20 -1.68 16 14 C 0.08 1.39 5.11 86.73 0.44 1.83 16 15 N -0.62 -17.65 3.33 -815.82 -2.71 -20.37 16 16 C 0.59 19.42 7.79 86.37 0.67 20.09 16 17 O -0.56 -23.86 13.69 -4.43 -0.06 -23.92 16 18 C -0.07 -1.68 6.91 40.57 0.28 -1.40 16 19 N -0.53 -7.78 5.61 -183.14 -1.03 -8.81 16 20 H 0.43 3.82 4.92 -92.70 -0.46 3.36 16 21 C 0.05 0.57 11.86 83.39 0.99 1.56 16 22 C -0.21 -3.54 10.73 22.21 0.24 -3.31 16 23 C -0.06 -1.58 5.67 -19.77 -0.11 -1.69 16 24 C -0.04 -1.07 5.27 -20.05 -0.11 -1.18 16 25 C -0.09 -2.80 7.63 22.50 0.17 -2.62 16 26 C -0.14 -3.99 10.03 22.24 0.22 -3.77 16 27 C -0.13 -2.99 10.04 22.32 0.22 -2.76 16 28 C -0.13 -2.85 10.03 22.24 0.22 -2.63 16 29 C -0.11 -2.75 9.73 22.50 0.22 -2.53 16 30 C 0.12 4.24 6.35 87.02 0.55 4.79 16 31 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 32 H 0.37 20.78 7.67 -92.71 -0.71 20.07 16 33 H 0.03 0.94 7.98 -2.39 -0.02 0.92 16 34 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.09 1.48 8.04 -2.39 -0.02 1.46 16 36 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.09 1.07 7.09 -2.39 -0.02 1.05 16 38 H 0.10 1.04 7.24 -2.38 -0.02 1.02 16 39 H 0.22 0.08 8.06 -2.91 -0.02 0.06 16 40 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 41 H 0.10 3.33 7.36 -2.91 -0.02 3.31 16 42 H 0.12 3.16 8.06 -2.91 -0.02 3.13 16 43 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 44 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 45 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 46 H 0.04 1.76 8.04 -2.39 -0.02 1.74 16 47 H 0.06 2.20 7.93 -2.39 -0.02 2.18 16 Total: -1.00 -83.03 385.12 2.43 -80.61 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: -0.17 Total: 33.97 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: 6.00 Total: -8.74 kcal Atomic # 7 Polarization: -125.52 SS G_CDS: -5.37 Total: -130.88 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.06 Total: -23.92 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -83.03 2.43 -80.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491848594.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.002 kcal (2) G-P(sol) polarization free energy of solvation -83.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds