Wall clock time and date at job start Tue Mar 31 2020 22:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48503 * 109.47005 * 269.99875 * 3 2 1 5 5 H 1.48500 * 109.47117 * 29.99197 * 3 2 1 6 6 H 1.48494 * 109.47340 * 149.99595 * 3 2 1 7 7 C 1.38952 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00342 * 180.02562 * 7 2 1 9 9 N 1.37094 * 119.99684 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00292 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99315 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00402 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47194 * 179.97438 * 12 10 9 14 14 C 1.48813 * 111.18681 * 52.66331 * 13 12 10 15 15 C 1.54933 * 103.35205 * 159.50572 * 14 13 12 16 16 C 1.54594 * 102.91997 * 322.69117 * 15 14 13 17 17 H 1.09005 * 110.30718 * 263.04287 * 16 15 14 18 18 C 1.52996 * 110.30938 * 140.87634 * 16 15 14 19 19 N 1.46495 * 109.47430 * 69.28147 * 18 16 15 20 20 C 1.34780 * 120.00214 * 179.97438 * 19 18 16 21 21 O 1.21283 * 119.99783 * 0.02562 * 20 19 18 22 22 C 1.50701 * 120.00087 * 179.97438 * 20 19 18 23 23 H 1.09004 * 110.48710 * 42.70653 * 22 20 19 24 24 C 1.54099 * 110.55101 * 280.00608 * 22 20 19 25 25 N 1.47060 * 103.85991 * 241.40582 * 24 22 20 26 26 C 1.33943 * 109.18051 * 0.02562 * 25 24 22 27 27 O 1.21591 * 123.04228 * 179.97438 * 26 25 24 28 28 N 1.33943 * 113.91693 * 359.97438 * 26 25 24 29 29 C 1.47905 * 111.00050 * 169.99666 * 13 12 10 30 30 H 0.96997 * 119.99965 * 0.02562 * 1 2 3 31 31 H 0.97004 * 120.00265 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.47620 * 59.99366 * 12 10 9 33 33 H 1.09011 * 109.46935 * 299.99480 * 12 10 9 34 34 H 1.08998 * 110.51915 * 41.07024 * 14 13 12 35 35 H 1.09004 * 110.69711 * 278.02347 * 14 13 12 36 36 H 1.08999 * 110.72416 * 204.32980 * 15 14 13 37 37 H 1.08998 * 110.87653 * 81.12010 * 15 14 13 38 38 H 1.09005 * 109.47405 * 189.28268 * 18 16 15 39 39 H 1.09001 * 109.47300 * 309.27695 * 18 16 15 40 40 H 0.96999 * 119.99850 * 0.02562 * 19 18 16 41 41 H 1.09007 * 110.55159 * 359.97438 * 24 22 20 42 42 H 1.08997 * 110.55423 * 122.81224 * 24 22 20 43 43 H 0.96999 * 125.40656 * 179.97438 * 25 24 22 44 44 H 0.97001 * 125.41124 * 180.02562 * 28 26 25 45 45 H 1.09002 * 109.91668 * 94.80258 * 29 13 12 46 46 H 1.09002 * 109.91761 * 333.70433 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2439 -4.8629 0.0010 13 7 2.1984 -5.9794 0.0017 14 6 3.1867 -5.8414 1.1057 15 6 3.7258 -7.2827 1.2857 16 6 2.4690 -8.1530 1.0554 17 1 2.0164 -8.4239 2.0093 18 6 2.8318 -9.4103 0.2625 19 7 3.6472 -10.2958 1.0974 20 6 4.0857 -11.4713 0.6049 21 8 3.8056 -11.7957 -0.5297 22 6 4.9250 -12.3820 1.4635 23 1 4.5229 -12.4297 2.4756 24 6 6.3904 -11.9057 1.4857 25 7 7.1356 -13.0318 0.9031 26 6 6.2775 -14.0102 0.5859 27 8 6.6267 -15.0616 0.0849 28 7 5.0000 -13.7255 0.8705 29 6 1.5091 -7.2660 0.2411 30 1 -0.4850 0.8400 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6181 -4.9209 -0.8896 33 1 0.6162 -4.9205 0.8904 34 1 2.6966 -5.4974 2.0165 35 1 3.9907 -5.1628 0.8205 36 1 4.1147 -7.4259 2.2938 37 1 4.4915 -7.5066 0.5430 38 1 1.9199 -9.9286 -0.0341 39 1 3.3954 -9.1289 -0.6270 40 1 3.8709 -10.0365 2.0049 41 1 6.5112 -11.0108 0.8752 42 1 6.7168 -11.7195 2.5088 43 1 8.0958 -13.0609 0.7691 44 1 4.2444 -14.3125 0.7109 45 1 1.2771 -7.7455 -0.7099 46 1 0.5918 -7.0965 0.8049 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493230446.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:17 Heat of formation + Delta-G solvation = -73.455191 kcal Electronic energy + Delta-G solvation = -28712.394637 eV Core-core repulsion = 24444.592346 eV Total energy + Delta-G solvation = -4267.802291 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.76130 -39.90794 -39.16893 -37.71830 -36.61818 -35.29526 -33.97490 -33.47188 -32.24729 -31.28555 -30.07799 -29.09788 -27.20084 -25.45331 -24.26973 -23.68447 -22.22375 -21.42869 -20.94474 -20.28744 -19.28478 -18.48341 -18.02446 -17.92330 -16.89769 -16.61125 -16.13584 -15.93097 -15.79230 -15.35593 -15.13703 -14.72205 -14.56146 -14.43676 -14.33034 -14.03425 -13.84859 -13.65508 -13.56102 -13.36688 -12.81937 -12.59817 -12.33753 -12.10256 -11.75156 -11.58369 -11.37189 -11.21826 -11.00945 -10.84261 -10.78374 -10.63754 -10.59639 -10.41596 -10.26880 -9.86512 -9.54069 -9.48706 -9.36433 -8.42263 -8.06840 -7.95548 -6.46893 -3.87917 1.97771 2.25739 2.53146 2.86152 3.13980 3.23175 3.28307 3.50186 3.68094 3.83745 4.01850 4.06659 4.23790 4.23984 4.42178 4.51276 4.67294 4.70377 4.86433 5.02251 5.08800 5.17371 5.20122 5.31762 5.40532 5.52608 5.56228 5.71229 5.76957 5.81282 5.91587 5.94573 6.04460 6.21167 6.24146 6.52040 6.60741 6.66586 6.87508 7.00553 7.16364 7.23760 7.50313 7.69840 8.00569 8.18058 8.55877 9.12564 9.48173 9.99557 10.70663 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.034255 B = 0.001642 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.211173 B =17048.162742 C =17541.683718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.561 5.561 10 C 0.441 3.559 11 O -0.582 6.582 12 C 0.037 3.963 13 N -0.495 5.495 14 C 0.038 3.962 15 C -0.123 4.123 16 C -0.110 4.110 17 H 0.080 0.920 18 C 0.130 3.870 19 N -0.721 5.721 20 C 0.499 3.501 21 O -0.520 6.520 22 C 0.103 3.897 23 H 0.118 0.882 24 C 0.103 3.897 25 N -0.739 5.739 26 C 0.706 3.294 27 O -0.583 6.583 28 N -0.715 5.715 29 C 0.040 3.960 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.090 0.910 33 H 0.048 0.952 34 H 0.035 0.965 35 H 0.118 0.882 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.402 0.598 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.434 0.566 44 H 0.435 0.565 45 H 0.080 0.920 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.324 -21.470 9.071 23.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.197 5.197 10 C 0.227 3.773 11 O -0.467 6.467 12 C -0.095 4.095 13 N -0.220 5.220 14 C -0.089 4.089 15 C -0.161 4.161 16 C -0.130 4.130 17 H 0.098 0.902 18 C 0.006 3.994 19 N -0.374 5.374 20 C 0.282 3.718 21 O -0.394 6.394 22 C -0.008 4.008 23 H 0.135 0.865 24 C -0.022 4.022 25 N -0.402 5.402 26 C 0.404 3.596 27 O -0.460 6.460 28 N -0.377 5.377 29 C -0.088 4.088 30 H 0.082 0.918 31 H 0.226 0.774 32 H 0.108 0.892 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.136 0.864 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.237 0.763 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.276 0.724 44 H 0.277 0.723 45 H 0.098 0.902 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.205 -22.047 7.460 24.088 hybrid contribution -0.825 1.048 1.146 1.759 sum 5.379 -20.999 8.606 23.323 Atomic orbital electron populations 1.69609 1.05957 1.28231 1.50363 1.25273 0.95635 0.99766 0.97217 0.85851 0.79190 0.80757 0.78448 1.20354 1.20929 1.19431 1.19699 0.93371 0.82177 1.47734 0.87865 1.41857 1.09217 1.04593 1.64047 1.19703 0.88356 0.84663 0.84598 1.90437 1.13715 1.86751 1.55750 1.22097 0.94542 0.91273 1.01591 1.64669 1.13190 0.99995 1.44119 1.23506 0.97505 0.96123 0.91756 1.22691 0.96601 0.95422 1.01353 1.22260 0.97489 0.94375 0.98865 0.90181 1.21546 0.95023 0.89007 0.93784 1.45996 1.53982 1.19477 1.17931 1.20744 0.80792 0.82211 0.88092 1.90790 1.56492 1.73651 1.18463 1.21856 0.96551 0.84277 0.98078 0.86476 1.22277 0.87680 0.91274 1.01015 1.45055 1.10044 1.17033 1.68087 1.15861 0.81630 0.83694 0.78380 1.91018 1.79513 1.25629 1.49848 1.44817 1.08410 1.16743 1.67735 1.22888 0.95403 0.91070 0.99489 0.91821 0.77445 0.89187 0.93367 0.94623 0.86432 0.91412 0.90582 0.91254 0.90456 0.76349 0.89269 0.88426 0.72423 0.72283 0.90173 0.93541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.98 13.05 55.50 0.72 -23.25 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.30 -8.14 9.68 -14.93 -0.14 -8.29 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 9 N -0.56 -13.78 5.29 -10.97 -0.06 -13.84 16 10 C 0.44 9.97 7.50 -10.99 -0.08 9.89 16 11 O -0.58 -14.79 13.12 5.54 0.07 -14.72 16 12 C 0.04 0.62 5.52 -4.98 -0.03 0.60 16 13 N -0.50 -7.64 5.27 -231.64 -1.22 -8.86 16 14 C 0.04 0.57 5.31 -1.74 -0.01 0.56 16 15 C -0.12 -1.19 6.42 -24.87 -0.16 -1.35 16 16 C -0.11 -0.91 3.03 -89.27 -0.27 -1.18 16 17 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 18 C 0.13 1.04 4.76 -4.05 -0.02 1.02 16 19 N -0.72 -4.02 5.43 -60.30 -0.33 -4.34 16 20 C 0.50 3.75 6.95 -10.98 -0.08 3.68 16 21 O -0.52 -6.58 16.56 5.55 0.09 -6.49 16 22 C 0.10 0.47 4.17 -68.20 -0.28 0.19 16 23 H 0.12 0.13 8.14 -51.93 -0.42 -0.29 16 24 C 0.10 0.36 7.70 -3.16 -0.02 0.34 16 25 N -0.74 -4.75 6.37 -64.70 -0.41 -5.17 16 26 C 0.71 7.25 8.92 -88.41 -0.79 6.46 16 27 O -0.58 -8.67 18.05 5.29 0.10 -8.57 16 28 N -0.71 -5.49 5.60 -59.33 -0.33 -5.82 16 29 C 0.04 0.45 6.35 -2.75 -0.02 0.43 16 30 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.39 9.25 7.90 -40.82 -0.32 8.92 16 32 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.05 0.74 7.81 -51.92 -0.41 0.34 16 34 H 0.04 0.54 8.02 -51.93 -0.42 0.12 16 35 H 0.12 2.18 6.00 -51.93 -0.31 1.87 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.78 7.76 -51.93 -0.40 0.38 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.79 8.00 -51.93 -0.42 0.37 16 40 H 0.40 1.02 8.41 -40.82 -0.34 0.67 16 41 H 0.09 0.32 7.72 -51.93 -0.40 -0.08 16 42 H 0.10 0.04 8.14 -51.93 -0.42 -0.38 16 43 H 0.43 2.10 8.96 -40.82 -0.37 1.73 16 44 H 0.43 3.08 8.96 -40.82 -0.37 2.72 16 45 H 0.08 0.85 7.68 -51.93 -0.40 0.45 16 46 H 0.05 0.48 7.57 -51.93 -0.39 0.09 16 LS Contribution 380.53 15.07 5.73 5.73 Total: -1.00 -37.32 380.53 -9.24 -46.57 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -6.59 Total: 10.38 kcal Atomic # 6 Polarization: 14.84 SS G_CDS: -2.00 Total: 12.84 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: -1.63 Total: -61.28 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: 0.26 Total: -29.78 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.32 -9.24 -46.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493230446.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.890 kcal (2) G-P(sol) polarization free energy of solvation -37.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds