Wall clock time and date at job start Tue Mar 31 2020 22:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99884 * 2 1 4 4 H 1.48503 * 109.46840 * 239.99831 * 3 2 1 5 5 H 1.48497 * 109.47050 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47203 * 119.99818 * 3 2 1 7 7 C 1.38809 * 120.00295 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00162 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99471 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99642 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47236 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.47173 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.49514 * 305.06397 * 12 11 10 14 14 C 1.53039 * 109.49535 * 184.99810 * 12 11 10 15 15 C 1.53043 * 109.53838 * 178.68097 * 14 12 11 16 16 C 1.53194 * 109.30859 * 61.36266 * 15 14 12 17 17 N 1.46918 * 108.77872 * 305.36848 * 16 15 14 18 18 C 1.34779 * 120.63141 * 233.58580 * 17 16 15 19 19 O 1.21281 * 120.00194 * 180.02562 * 18 17 16 20 20 C 1.50701 * 119.99814 * 359.97438 * 18 17 16 21 21 N 1.46498 * 109.47236 * 180.02562 * 20 18 17 22 22 C 1.36376 * 125.95947 * 89.99903 * 21 20 18 23 23 O 1.35623 * 125.99126 * 359.97159 * 22 21 20 24 24 N 1.30910 * 108.02144 * 180.22940 * 22 21 20 25 25 N 1.40119 * 107.93673 * 359.59255 * 24 22 21 26 26 C 1.30900 * 107.94228 * 0.41410 * 25 24 22 27 27 O 1.35628 * 125.99371 * 179.75297 * 26 25 24 28 28 C 1.46925 * 118.74231 * 53.86198 * 17 16 15 29 29 H 0.97003 * 119.99994 * 0.02562 * 1 2 3 30 30 H 0.96994 * 120.00247 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47504 * 59.99701 * 10 9 7 32 32 H 1.09004 * 109.47190 * 299.99652 * 10 9 7 33 33 H 1.09000 * 109.46997 * 59.99539 * 11 10 9 34 34 H 1.09004 * 109.46868 * 299.99997 * 11 10 9 35 35 H 1.09002 * 109.46127 * 58.66033 * 14 12 11 36 36 H 1.08998 * 109.46013 * 298.70540 * 14 12 11 37 37 H 1.08993 * 109.49280 * 301.41767 * 15 14 12 38 38 H 1.08994 * 109.49567 * 181.31637 * 15 14 12 39 39 H 1.08994 * 109.58457 * 185.57557 * 16 15 14 40 40 H 1.09011 * 109.70199 * 65.22708 * 16 15 14 41 41 H 1.08996 * 109.47253 * 60.00038 * 20 18 17 42 42 H 1.09009 * 109.47129 * 300.00401 * 20 18 17 43 43 H 0.96700 * 114.00377 * 89.99746 * 23 22 21 44 44 H 0.96700 * 114.00392 * 270.00541 * 27 26 25 45 45 H 1.08998 * 109.59025 * 65.92522 * 28 17 16 46 46 H 1.08999 * 109.59194 * 186.35444 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0639 -4.8197 0.0012 12 6 1.8290 -6.1447 0.0005 13 1 2.5214 -6.1645 -0.8410 14 6 0.8397 -7.3057 -0.1245 15 6 1.6061 -8.6299 -0.1583 16 6 2.3856 -8.7976 1.1498 17 7 3.2335 -7.6145 1.3500 18 6 4.5571 -7.7470 1.5665 19 8 5.2463 -6.7626 1.7309 20 6 5.1807 -9.1184 1.6054 21 7 6.6191 -8.9939 1.8541 22 6 7.2218 -8.9785 3.0773 23 8 6.5949 -9.0750 4.2761 24 7 8.5112 -8.8485 2.8919 25 7 8.7447 -8.7880 1.5116 26 6 7.5890 -8.8741 0.9030 27 8 7.3907 -8.8486 -0.4385 28 6 2.6100 -6.2846 1.3160 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.6848 -3.7145 0.8905 32 1 2.6847 -3.7145 -0.8895 33 1 0.4368 -4.7621 -0.8885 34 1 0.4376 -4.7617 0.8914 35 1 0.2646 -7.1953 -1.0439 36 1 0.1628 -7.2995 0.7298 37 1 2.3010 -8.6266 -0.9980 38 1 0.9025 -9.4547 -0.2709 39 1 3.0100 -9.6890 1.0913 40 1 1.6892 -8.8933 1.9829 41 1 5.0187 -9.6184 0.6505 42 1 4.7235 -9.7029 2.4038 43 1 6.4937 -9.9823 4.5951 44 1 7.2527 -7.9619 -0.7990 45 1 1.9298 -6.1781 2.1611 46 1 3.3825 -5.5173 1.3672 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495396083.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:04 Heat of formation + Delta-G solvation = -8.863216 kcal Electronic energy + Delta-G solvation = -29843.763906 eV Core-core repulsion = 25578.762534 eV Total energy + Delta-G solvation = -4265.001372 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.67375 -40.56962 -38.54889 -38.13400 -37.45030 -35.51854 -34.73140 -33.64772 -32.36591 -30.80814 -29.91450 -29.02577 -27.41018 -25.50486 -24.28891 -23.14706 -22.73496 -22.44323 -21.15734 -20.58814 -19.76054 -19.27879 -18.83895 -17.99937 -17.19151 -17.02798 -16.69297 -16.05427 -15.83225 -15.70886 -15.12868 -14.86243 -14.57814 -14.06770 -13.91191 -13.79314 -13.64454 -13.47611 -13.28344 -13.13070 -12.99802 -12.78700 -12.74738 -12.35745 -11.75481 -11.59438 -11.29414 -11.26636 -11.13836 -10.98535 -10.89857 -10.86013 -10.69882 -10.53944 -10.33438 -10.02736 -9.94707 -9.75633 -9.66287 -9.01830 -8.85492 -6.91759 -5.76029 -3.04661 1.06138 1.36303 1.88857 2.04435 2.49247 2.87895 3.35261 3.45935 3.49737 3.51347 3.77960 3.88920 4.23277 4.30499 4.49264 4.55514 4.63515 4.75810 4.82633 4.83032 4.92868 4.97928 5.22533 5.27992 5.39806 5.43918 5.51632 5.54713 5.65439 5.68522 5.72513 5.84259 5.90014 6.03408 6.08820 6.21715 6.34805 6.36404 6.63964 6.82348 6.84884 6.87317 6.95317 7.54647 7.63909 7.71305 8.43328 9.54313 10.11940 10.46526 11.46933 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011758 B = 0.002577 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.693953 B =10862.214428 C =12302.511348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.734 5.734 10 C 0.151 3.849 11 C -0.119 4.119 12 C -0.094 4.094 13 H 0.074 0.926 14 C -0.117 4.117 15 C -0.135 4.135 16 C 0.103 3.897 17 N -0.604 5.604 18 C 0.496 3.504 19 O -0.519 6.519 20 C 0.084 3.916 21 N -0.499 5.499 22 C 0.417 3.583 23 O -0.432 6.432 24 N -0.294 5.294 25 N -0.292 5.292 26 C 0.417 3.583 27 O -0.439 6.439 28 C 0.114 3.886 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.019 0.981 32 H 0.016 0.984 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.409 0.591 44 H 0.417 0.583 45 H 0.073 0.927 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.121 -29.508 2.498 29.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.378 5.378 10 C 0.024 3.976 11 C -0.158 4.158 12 C -0.114 4.114 13 H 0.093 0.907 14 C -0.154 4.154 15 C -0.173 4.173 16 C -0.020 4.020 17 N -0.338 5.338 18 C 0.281 3.719 19 O -0.394 6.394 20 C -0.044 4.044 21 N -0.219 5.219 22 C 0.107 3.893 23 O -0.231 6.231 24 N -0.138 5.138 25 N -0.136 5.136 26 C 0.107 3.893 27 O -0.240 6.240 28 C -0.007 4.007 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.037 0.963 32 H 0.034 0.966 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.147 0.853 42 H 0.143 0.857 43 H 0.267 0.733 44 H 0.277 0.723 45 H 0.091 0.909 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.208 -28.700 2.866 29.504 hybrid contribution -1.730 0.826 -0.311 1.942 sum 4.478 -27.874 2.556 28.347 Atomic orbital electron populations 1.69650 1.05121 1.25761 1.57900 1.24736 0.95538 0.97711 1.03016 0.86260 0.78534 0.83440 0.77949 1.21237 1.21649 1.21192 1.19206 0.91043 0.84227 1.42626 0.91263 1.42352 1.05825 1.00074 1.89525 1.20698 0.93522 0.85652 0.97757 1.21742 0.98683 0.92840 1.02497 1.21539 0.97198 0.95295 0.97386 0.90747 1.21609 0.97750 0.93272 1.02811 1.21923 0.99555 0.98819 0.96977 1.21856 0.94343 0.86992 0.98837 1.48140 1.06509 1.08602 1.70516 1.20552 0.82589 0.90911 0.77858 1.90835 1.60921 1.39329 1.48294 1.21776 0.78766 0.97287 1.06553 1.46641 1.08043 1.60331 1.06927 1.21245 0.87736 1.00521 0.79836 1.85037 1.77445 1.33773 1.26867 1.78376 1.08187 1.21883 1.05314 1.78387 1.16540 1.21588 0.97078 1.21275 0.84560 1.00242 0.83175 1.84866 1.92326 1.35800 1.10988 1.22011 0.97888 0.83047 0.97795 0.93482 0.78347 0.96327 0.96608 0.91404 0.91697 0.91163 0.91501 0.91322 0.90425 0.90292 0.90547 0.85276 0.85726 0.73254 0.72345 0.90890 0.88096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.64 13.06 55.49 0.72 -27.92 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -18.92 5.60 -59.91 -0.34 -19.26 16 10 C 0.15 3.04 6.03 -4.04 -0.02 3.01 16 11 C -0.12 -1.77 4.80 -26.73 -0.13 -1.89 16 12 C -0.09 -1.04 2.35 -90.27 -0.21 -1.25 16 13 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 14 C -0.12 -0.93 5.16 -26.69 -0.14 -1.06 16 15 C -0.13 -0.70 6.08 -26.61 -0.16 -0.86 16 16 C 0.10 0.48 6.34 -3.71 -0.02 0.45 16 17 N -0.60 -5.20 2.97 -172.51 -0.51 -5.72 16 18 C 0.50 4.97 7.77 -10.98 -0.09 4.89 16 19 O -0.52 -7.99 15.84 5.56 0.09 -7.90 16 20 C 0.08 0.49 4.84 -5.19 -0.03 0.47 16 21 N -0.50 -4.68 2.25 -121.35 -0.27 -4.95 16 22 C 0.42 4.47 9.15 -88.80 -0.81 3.66 16 23 O -0.43 -3.29 13.58 -18.57 -0.25 -3.54 16 24 N -0.29 -4.07 12.72 29.66 0.38 -3.69 16 25 N -0.29 -4.07 12.72 29.65 0.38 -3.70 16 26 C 0.42 4.56 9.15 -88.81 -0.81 3.74 16 27 O -0.44 -3.53 13.58 -18.58 -0.25 -3.78 16 28 C 0.11 1.31 5.35 -3.49 -0.02 1.29 16 29 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.38 10.25 7.67 -40.82 -0.31 9.94 16 31 H 0.02 0.39 6.70 -51.93 -0.35 0.04 16 32 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.08 0.14 5.93 -51.93 -0.31 -0.17 16 40 H 0.08 0.30 8.14 -51.92 -0.42 -0.12 16 41 H 0.13 0.42 7.69 -51.93 -0.40 0.02 16 42 H 0.12 0.32 7.94 -51.92 -0.41 -0.10 16 43 H 0.41 0.43 9.06 45.56 0.41 0.84 16 44 H 0.42 1.94 9.06 45.56 0.41 2.35 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.10 1.50 5.73 -51.93 -0.30 1.21 16 LS Contribution 383.06 15.07 5.77 5.77 Total: -1.00 -40.51 383.06 -7.02 -47.53 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -5.03 Total: 4.39 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -2.69 Total: 4.87 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: 0.36 Total: -65.23 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.42 Total: -15.22 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -40.51 -7.02 -47.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495396083.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.671 kcal (2) G-P(sol) polarization free energy of solvation -40.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds