Wall clock time and date at job start Tue Mar 31 2020 22:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99884 * 2 1 4 4 H 1.48503 * 109.46840 * 239.99831 * 3 2 1 5 5 H 1.48497 * 109.47050 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47203 * 119.99818 * 3 2 1 7 7 C 1.38809 * 120.00295 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00162 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99471 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99642 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47236 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.47173 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.49514 * 305.06397 * 12 11 10 14 14 C 1.53039 * 109.49535 * 184.99810 * 12 11 10 15 15 C 1.53043 * 109.53838 * 178.68097 * 14 12 11 16 16 C 1.53194 * 109.30859 * 61.36266 * 15 14 12 17 17 N 1.46918 * 108.77872 * 305.36848 * 16 15 14 18 18 C 1.34779 * 120.63141 * 233.58580 * 17 16 15 19 19 O 1.21281 * 120.00194 * 180.02562 * 18 17 16 20 20 C 1.50701 * 119.99814 * 359.97438 * 18 17 16 21 21 N 1.46498 * 109.47236 * 180.02562 * 20 18 17 22 22 C 1.36376 * 125.95947 * 89.99903 * 21 20 18 23 23 O 1.35623 * 125.99126 * 359.97159 * 22 21 20 24 24 N 1.30910 * 108.02144 * 180.22940 * 22 21 20 25 25 N 1.40119 * 107.93673 * 359.59255 * 24 22 21 26 26 C 1.30900 * 107.94228 * 0.41410 * 25 24 22 27 27 O 1.35628 * 125.99371 * 179.75297 * 26 25 24 28 28 C 1.46925 * 118.74231 * 53.86198 * 17 16 15 29 29 H 0.97003 * 119.99994 * 0.02562 * 1 2 3 30 30 H 0.96994 * 120.00247 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47504 * 59.99701 * 10 9 7 32 32 H 1.09004 * 109.47190 * 299.99652 * 10 9 7 33 33 H 1.09000 * 109.46997 * 59.99539 * 11 10 9 34 34 H 1.09004 * 109.46868 * 299.99997 * 11 10 9 35 35 H 1.09002 * 109.46127 * 58.66033 * 14 12 11 36 36 H 1.08998 * 109.46013 * 298.70540 * 14 12 11 37 37 H 1.08993 * 109.49280 * 301.41767 * 15 14 12 38 38 H 1.08994 * 109.49567 * 181.31637 * 15 14 12 39 39 H 1.08994 * 109.58457 * 185.57557 * 16 15 14 40 40 H 1.09011 * 109.70199 * 65.22708 * 16 15 14 41 41 H 1.08996 * 109.47253 * 60.00038 * 20 18 17 42 42 H 1.09009 * 109.47129 * 300.00401 * 20 18 17 43 43 H 0.96700 * 114.00377 * 89.99746 * 23 22 21 44 44 H 0.96700 * 114.00392 * 270.00541 * 27 26 25 45 45 H 1.08998 * 109.59025 * 65.92522 * 28 17 16 46 46 H 1.08999 * 109.59194 * 186.35444 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0639 -4.8197 0.0012 12 6 1.8290 -6.1447 0.0005 13 1 2.5214 -6.1645 -0.8410 14 6 0.8397 -7.3057 -0.1245 15 6 1.6061 -8.6299 -0.1583 16 6 2.3856 -8.7976 1.1498 17 7 3.2335 -7.6145 1.3500 18 6 4.5571 -7.7470 1.5665 19 8 5.2463 -6.7626 1.7309 20 6 5.1807 -9.1184 1.6054 21 7 6.6191 -8.9939 1.8541 22 6 7.2218 -8.9785 3.0773 23 8 6.5949 -9.0750 4.2761 24 7 8.5112 -8.8485 2.8919 25 7 8.7447 -8.7880 1.5116 26 6 7.5890 -8.8741 0.9030 27 8 7.3907 -8.8486 -0.4385 28 6 2.6100 -6.2846 1.3160 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.6848 -3.7145 0.8905 32 1 2.6847 -3.7145 -0.8895 33 1 0.4368 -4.7621 -0.8885 34 1 0.4376 -4.7617 0.8914 35 1 0.2646 -7.1953 -1.0439 36 1 0.1628 -7.2995 0.7298 37 1 2.3010 -8.6266 -0.9980 38 1 0.9025 -9.4547 -0.2709 39 1 3.0100 -9.6890 1.0913 40 1 1.6892 -8.8933 1.9829 41 1 5.0187 -9.6184 0.6505 42 1 4.7235 -9.7029 2.4038 43 1 6.4937 -9.9823 4.5951 44 1 7.2527 -7.9619 -0.7990 45 1 1.9298 -6.1781 2.1611 46 1 3.3825 -5.5173 1.3672 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495396083.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:03 Heat of formation + Delta-G solvation = -46.489758 kcal Electronic energy + Delta-G solvation = -29845.395515 eV Core-core repulsion = 25578.762534 eV Total energy + Delta-G solvation = -4266.632982 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.41998 -41.32109 -39.18493 -39.01006 -38.08991 -37.01412 -35.53707 -34.97409 -33.43832 -32.33713 -30.73048 -29.95437 -28.62296 -26.20835 -25.89350 -24.04068 -23.91130 -23.18328 -22.25605 -21.62906 -20.48796 -19.90516 -19.50954 -19.18938 -18.62159 -17.88435 -17.43512 -16.84904 -16.75005 -16.51183 -16.41559 -15.92803 -15.51856 -15.34100 -15.20112 -14.89285 -14.60899 -14.42659 -14.18978 -14.02687 -13.93830 -13.47579 -13.46237 -13.38646 -13.00913 -12.84807 -12.62808 -12.56238 -12.31469 -12.20568 -11.97099 -11.93076 -11.83640 -11.73646 -11.63111 -11.53945 -11.20211 -10.96036 -10.73535 -10.58204 -9.74745 -9.06302 -8.01295 -5.30629 0.33482 0.71841 1.09934 1.34590 1.42795 1.45968 1.52382 1.82252 2.17880 2.51244 2.79325 3.22214 3.31721 3.41343 3.62923 3.81099 3.88030 3.94780 4.05224 4.10108 4.13757 4.21139 4.30432 4.38084 4.49296 4.52909 4.62917 4.68335 4.69930 4.84669 4.86829 4.88703 5.04410 5.12094 5.20977 5.24671 5.31318 5.36439 5.42373 5.45948 5.52577 6.14823 6.21933 6.24725 6.41464 6.75327 6.93710 7.27825 8.03118 8.27522 9.21901 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011758 B = 0.002577 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.693953 B =10862.214428 C =12302.511348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.071 4.071 3 Si 0.973 3.027 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.254 4.254 8 H 0.068 0.932 9 N -0.746 5.746 10 C 0.151 3.849 11 C -0.106 4.106 12 C -0.082 4.082 13 H 0.065 0.935 14 C -0.114 4.114 15 C -0.129 4.129 16 C 0.095 3.905 17 N -0.597 5.597 18 C 0.491 3.509 19 O -0.585 6.585 20 C 0.087 3.913 21 N -0.495 5.495 22 C 0.428 3.572 23 O -0.434 6.434 24 N -0.343 5.343 25 N -0.339 5.339 26 C 0.423 3.577 27 O -0.433 6.433 28 C 0.117 3.883 29 H 0.254 0.746 30 H 0.375 0.625 31 H 0.010 0.990 32 H 0.009 0.991 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.107 0.893 39 H 0.121 0.879 40 H 0.092 0.908 41 H 0.166 0.834 42 H 0.170 0.830 43 H 0.438 0.562 44 H 0.431 0.569 45 H 0.074 0.926 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.028 -32.476 2.390 32.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.801 3.199 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.206 1.206 7 C -0.386 4.386 8 H 0.086 0.914 9 N -0.389 5.389 10 C 0.025 3.975 11 C -0.145 4.145 12 C -0.102 4.102 13 H 0.084 0.916 14 C -0.152 4.152 15 C -0.167 4.167 16 C -0.026 4.026 17 N -0.329 5.329 18 C 0.278 3.722 19 O -0.465 6.465 20 C -0.038 4.038 21 N -0.215 5.215 22 C 0.117 3.883 23 O -0.239 6.239 24 N -0.187 5.187 25 N -0.183 5.183 26 C 0.112 3.888 27 O -0.236 6.236 28 C -0.006 4.006 29 H 0.063 0.937 30 H 0.208 0.792 31 H 0.028 0.972 32 H 0.027 0.973 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.125 0.875 39 H 0.139 0.861 40 H 0.110 0.890 41 H 0.184 0.816 42 H 0.187 0.813 43 H 0.301 0.699 44 H 0.293 0.707 45 H 0.092 0.908 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.089 -31.751 2.753 32.274 hybrid contribution -1.471 1.723 -0.268 2.281 sum 3.618 -30.028 2.485 30.347 Atomic orbital electron populations 1.69793 1.06476 1.26367 1.59077 1.25563 0.96487 1.01053 1.03279 0.85226 0.77330 0.79122 0.78185 1.20341 1.21448 1.20613 1.19566 0.91294 0.85722 1.42027 0.91422 1.42569 1.05669 1.01244 1.89451 1.20844 0.94403 0.85548 0.96743 1.21620 0.97618 0.92826 1.02409 1.21403 0.97404 0.94605 0.96786 0.91617 1.21597 0.97155 0.93328 1.03120 1.21921 0.99831 0.97720 0.97234 1.22274 0.94801 0.86392 0.99099 1.48203 1.06671 1.08617 1.69450 1.21318 0.82530 0.91890 0.76475 1.90820 1.62453 1.41842 1.51367 1.22177 0.76508 0.94884 1.10242 1.46678 1.09188 1.59663 1.06001 1.21286 0.87405 0.98644 0.80960 1.85006 1.76770 1.36542 1.25540 1.78235 1.10437 1.24414 1.05590 1.78239 1.18695 1.23773 0.97584 1.21319 0.84539 0.98836 0.84097 1.84845 1.92223 1.37006 1.09551 1.21701 0.96672 0.84173 0.98036 0.93734 0.79246 0.97164 0.97293 0.91448 0.91707 0.91132 0.90919 0.91403 0.87481 0.86109 0.89019 0.81626 0.81282 0.69889 0.70689 0.90759 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.14 13.06 21.65 0.28 -59.85 16 2 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 3 Si 0.97 47.60 29.55 68.60 2.03 49.63 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 6 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 7 C -0.25 -14.98 9.99 84.03 0.84 -14.14 16 8 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 9 N -0.75 -39.68 5.60 -343.45 -1.92 -41.61 16 10 C 0.15 6.30 6.03 86.38 0.52 6.82 16 11 C -0.11 -3.18 4.80 30.60 0.15 -3.04 16 12 C -0.08 -1.75 2.35 -10.57 -0.02 -1.78 16 13 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 14 C -0.11 -1.49 5.16 30.62 0.16 -1.33 16 15 C -0.13 -0.74 6.08 30.67 0.19 -0.56 16 16 C 0.10 0.40 6.34 86.36 0.55 0.95 16 17 N -0.60 -8.85 2.97 -818.07 -2.43 -11.27 16 18 C 0.49 8.90 7.77 87.66 0.68 9.58 16 19 O -0.59 -18.32 15.84 -3.03 -0.05 -18.37 16 20 C 0.09 0.68 4.84 85.63 0.41 1.09 16 21 N -0.50 -8.32 2.25 -759.27 -1.71 -10.02 16 22 C 0.43 8.74 9.15 179.71 1.65 10.38 16 23 O -0.43 -5.74 13.58 -89.36 -1.21 -6.96 16 24 N -0.34 -9.66 12.72 -173.66 -2.21 -11.86 16 25 N -0.34 -9.66 12.72 -173.66 -2.21 -11.87 16 26 C 0.42 8.91 9.15 179.72 1.65 10.55 16 27 O -0.43 -6.35 13.58 -89.40 -1.21 -7.56 16 28 C 0.12 2.67 5.35 86.51 0.46 3.13 16 29 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 30 H 0.38 20.72 7.67 -92.71 -0.71 20.01 16 31 H 0.01 0.46 6.70 -2.39 -0.02 0.44 16 32 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 39 H 0.12 -0.44 5.93 -2.39 -0.01 -0.45 16 40 H 0.09 0.22 8.14 -2.38 -0.02 0.20 16 41 H 0.17 0.13 7.69 -2.39 -0.02 0.12 16 42 H 0.17 -0.17 7.94 -2.38 -0.02 -0.18 16 43 H 0.44 -0.38 9.06 -74.06 -0.67 -1.05 16 44 H 0.43 3.62 9.06 -74.06 -0.67 2.95 16 45 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.06 1.84 5.73 -2.39 -0.01 1.83 16 Total: -1.00 -94.21 383.06 -3.95 -98.16 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -1.00 Total: 13.68 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 7.69 Total: 17.90 kcal Atomic # 7 Polarization: -136.30 SS G_CDS: -10.19 Total: -146.49 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -2.47 Total: -32.89 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -94.21 -3.95 -98.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495396083.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.675 kcal (2) G-P(sol) polarization free energy of solvation -94.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds