Wall clock time and date at job start Tue Mar 31 2020 22:45:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31626 * 1
3 3 Si 1.86796 * 119.99476 * 2 1
4 4 H 1.48502 * 109.47212 * 240.00043 * 3 2 1
5 5 H 1.48500 * 109.47383 * 0.02562 * 3 2 1
6 6 H 1.48500 * 109.47093 * 120.00038 * 3 2 1
7 7 C 1.38809 * 120.00055 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99604 * 179.97438 * 7 2 1
9 9 N 1.36936 * 120.00351 * 0.02562 * 7 2 1
10 10 C 1.46496 * 120.00277 * 179.97438 * 9 7 2
11 11 C 1.53003 * 109.47227 * 180.02562 * 10 9 7
12 12 H 1.08997 * 109.46707 * 294.99325 * 11 10 9
13 13 N 1.46494 * 109.47148 * 54.99795 * 11 10 9
14 14 C 1.34779 * 119.99681 * 205.00124 * 13 11 10
15 15 O 1.21584 * 120.00350 * 359.97438 * 14 13 11
16 16 C 1.47576 * 120.00011 * 180.02562 * 14 13 11
17 17 C 1.39663 * 120.19082 * 353.89422 * 16 14 13
18 18 C 1.37830 * 119.91841 * 180.02562 * 17 16 14
19 19 C 1.38539 * 120.30889 * 359.97438 * 18 17 16
20 20 C 1.38068 * 120.39101 * 359.97438 * 19 18 17
21 21 C 1.38764 * 120.07652 * 0.02562 * 20 19 18
22 22 N 1.39662 * 120.15366 * 179.97438 * 21 20 19
23 23 C 1.36651 * 125.68091 * 122.25229 * 22 21 20
24 24 C 1.34811 * 108.19406 * 179.82952 * 23 22 21
25 25 C 1.40988 * 107.48499 * 0.42385 * 24 23 22
26 26 C 1.34809 * 107.48855 * 359.73578 * 25 24 23
27 27 C 1.53000 * 109.46861 * 174.99749 * 11 10 9
28 28 C 1.52999 * 117.49952 * 248.74216 * 27 11 10
29 29 C 1.53002 * 117.49595 * 180.02562 * 27 11 10
30 30 H 0.96989 * 120.00410 * 359.97438 * 1 2 3
31 31 H 0.97005 * 119.99764 * 359.97438 * 9 7 2
32 32 H 1.09000 * 109.47398 * 59.99676 * 10 9 7
33 33 H 1.09005 * 109.46900 * 299.99501 * 10 9 7
34 34 H 0.96999 * 120.00531 * 25.00146 * 13 11 10
35 35 H 1.07997 * 120.04153 * 359.97438 * 17 16 14
36 36 H 1.07999 * 119.84891 * 179.72163 * 18 17 16
37 37 H 1.08000 * 119.80351 * 179.97438 * 19 18 17
38 38 H 1.07998 * 119.96302 * 179.97438 * 20 19 18
39 39 H 1.07997 * 125.90392 * 359.97438 * 23 22 21
40 40 H 1.07996 * 126.25945 * 180.14168 * 24 23 22
41 41 H 1.08005 * 126.25531 * 179.71959 * 25 24 23
42 42 H 1.07999 * 125.90805 * 179.97438 * 26 25 24
43 43 H 1.09001 * 115.55151 * 34.42228 * 27 11 10
44 44 H 1.08996 * 117.49794 * 0.02562 * 28 27 11
45 45 H 1.09002 * 117.49473 * 145.02326 * 28 27 11
46 46 H 1.08997 * 117.50176 * 214.97750 * 29 27 11
47 47 H 1.09001 * 117.49981 * 359.97438 * 29 27 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.1039 1.6966 -1.2125
5 1 1.2850 2.7465 0.0006
6 1 3.1038 1.6965 1.2125
7 6 2.0103 -1.2021 0.0005
8 1 3.0903 -1.2020 0.0001
9 7 1.3257 -2.3881 0.0005
10 6 2.0582 -3.6567 0.0005
11 6 1.0640 -4.8197 -0.0001
12 1 0.4976 -4.8139 0.9311
13 7 0.1450 -4.6758 -1.1318
14 6 -1.0795 -5.2368 -1.0809
15 8 -1.4212 -5.8625 -0.0961
16 6 -2.0052 -5.0923 -2.2212
17 6 -1.6684 -4.2714 -3.2997
18 6 -2.5374 -4.1402 -4.3614
19 6 -3.7447 -4.8197 -4.3648
20 6 -4.0901 -5.6354 -3.3058
21 6 -3.2273 -5.7792 -2.2286
22 7 -3.5753 -6.6036 -1.1562
23 6 -2.8512 -7.6702 -0.7031
24 6 -3.5064 -8.2093 0.3445
25 6 -4.6822 -7.4566 0.5415
26 6 -4.6996 -6.4814 -0.3891
27 6 1.8250 -6.1411 -0.1259
28 6 1.6674 -6.9257 -1.4299
29 6 1.0023 -7.4309 -0.1457
30 1 -0.4850 0.8399 0.0004
31 1 0.3557 -2.3881 0.0005
32 1 2.6849 -3.7145 0.8905
33 1 2.6848 -3.7145 -0.8895
34 1 0.4176 -4.1769 -1.9177
35 1 -0.7285 -3.7394 -3.3013
36 1 -2.2778 -3.5015 -5.1927
37 1 -4.4197 -4.7106 -5.2008
38 1 -5.0332 -6.1616 -3.3155
39 1 -1.9145 -8.0194 -1.1119
40 1 -3.1909 -9.0644 0.9237
41 1 -5.4319 -7.6298 1.2994
42 1 -5.4693 -5.7332 -0.5081
43 1 2.7972 -6.1724 0.3660
44 1 1.0219 -6.5004 -2.1983
45 1 2.5359 -7.4735 -1.7957
46 1 1.4338 -8.3106 0.3318
47 1 -0.0810 -7.3382 -0.0687
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001498816639.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:45:37
Heat of formation + Delta-G solvation = 106.086272 kcal
Electronic energy + Delta-G solvation = -29972.836454 eV
Core-core repulsion = 26123.668928 eV
Total energy + Delta-G solvation = -3849.167525 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-41.55020 -39.96063 -38.66701 -36.95011 -34.94003 -33.55420 -32.96292 -31.79318
-30.78123 -28.91140 -28.55537 -28.03233 -24.36849 -23.84714 -23.01145 -22.27118
-21.52470 -21.08274 -20.09181 -19.82443 -19.61457 -18.45790 -17.54159 -17.07036
-16.17085 -15.95482 -15.39625 -15.28089 -14.89989 -14.59984 -14.36570 -14.02681
-13.65094 -13.49208 -13.43044 -13.27128 -13.22692 -12.93120 -12.46925 -12.16968
-12.11417 -12.08524 -11.87027 -11.62028 -11.58709 -11.34855 -11.22955 -10.92796
-10.83944 -10.27138 -10.13940 -9.83077 -9.66857 -9.58260 -9.41832 -9.22952
-8.95226 -8.68686 -8.21744 -7.77364 -7.00590 -5.81635 -3.12004 0.58387
0.96658 2.52372 2.90494 3.07726 3.30506 3.37279 3.39987 3.44919
3.45719 3.67800 4.03845 4.51633 4.57110 4.61046 4.77650 4.90628
5.01696 5.08495 5.12058 5.16953 5.18565 5.41510 5.46725 5.50349
5.56126 5.59691 5.69495 5.75746 5.82219 5.86575 5.97814 5.99661
6.00857 6.03868 6.16943 6.20225 6.29137 6.44270 6.48206 6.48694
6.51350 6.54771 6.65410 6.88972 7.21537 7.43307 7.63880 7.69477
7.76367 8.35733 8.43933 9.47620 10.02939 10.38402 11.40396
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.010689 B = 0.003803 C = 0.003332
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2618.837742 B = 7360.291025 C = 8401.010715
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.931 5.931
2 C -0.010 4.010
3 Si 0.907 3.093
4 H -0.286 1.286
5 H -0.291 1.291
6 H -0.286 1.286
7 C -0.244 4.244
8 H 0.070 0.930
9 N -0.731 5.731
10 C 0.148 3.852
11 C 0.170 3.830
12 H 0.092 0.908
13 N -0.701 5.701
14 C 0.550 3.450
15 O -0.512 6.512
16 C -0.130 4.130
17 C -0.067 4.067
18 C -0.123 4.123
19 C -0.084 4.084
20 C -0.129 4.129
21 C 0.175 3.825
22 N -0.401 5.401
23 C 0.054 3.946
24 C -0.210 4.210
25 C -0.190 4.190
26 C -0.016 4.016
27 C -0.159 4.159
28 C -0.178 4.178
29 C -0.188 4.188
30 H 0.256 0.744
31 H 0.386 0.614
32 H 0.035 0.965
33 H 0.026 0.974
34 H 0.402 0.598
35 H 0.139 0.861
36 H 0.135 0.865
37 H 0.134 0.866
38 H 0.134 0.866
39 H 0.149 0.851
40 H 0.131 0.869
41 H 0.132 0.868
42 H 0.155 0.845
43 H 0.109 0.891
44 H 0.089 0.911
45 H 0.086 0.914
46 H 0.084 0.916
47 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.253 -15.604 -9.279 19.201
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.579 5.579
2 C -0.206 4.206
3 Si 0.738 3.262
4 H -0.213 1.213
5 H -0.217 1.217
6 H -0.212 1.212
7 C -0.375 4.375
8 H 0.088 0.912
9 N -0.376 5.376
10 C 0.020 3.980
11 C 0.066 3.934
12 H 0.110 0.890
13 N -0.352 5.352
14 C 0.336 3.664
15 O -0.390 6.390
16 C -0.135 4.135
17 C -0.086 4.086
18 C -0.141 4.141
19 C -0.102 4.102
20 C -0.149 4.149
21 C 0.082 3.918
22 N -0.075 5.075
23 C -0.074 4.074
24 C -0.234 4.234
25 C -0.215 4.215
26 C -0.142 4.142
27 C -0.179 4.179
28 C -0.215 4.215
29 C -0.224 4.224
30 H 0.066 0.934
31 H 0.220 0.780
32 H 0.052 0.948
33 H 0.044 0.956
34 H 0.238 0.762
35 H 0.156 0.844
36 H 0.153 0.847
37 H 0.152 0.848
38 H 0.152 0.848
39 H 0.167 0.833
40 H 0.149 0.851
41 H 0.150 0.850
42 H 0.172 0.828
43 H 0.127 0.873
44 H 0.108 0.892
45 H 0.105 0.895
46 H 0.103 0.897
47 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges -6.267 -15.723 -8.770 19.063
hybrid contribution 0.466 1.450 -0.275 1.547
sum -5.801 -14.273 -9.045 17.866
Atomic orbital electron populations
1.69659 1.05103 1.25841 1.57270 1.24742 0.95481 0.97680 1.02745
0.86272 0.78522 0.83516 0.77867 1.21260 1.21695 1.21230 1.19163
0.90999 0.84039 1.43334 0.91179 1.42343 1.05968 0.99704 1.89621
1.20917 0.93034 0.85104 0.98982 1.20760 0.90070 0.92866 0.89752
0.88985 1.45895 1.14244 1.54210 1.20869 1.18034 0.81701 0.79842
0.86786 1.90806 1.75326 1.40318 1.32506 1.20115 0.96218 1.00386
0.96737 1.21402 1.00033 0.95282 0.91877 1.21223 0.94085 0.99837
0.98924 1.21217 0.96506 0.94866 0.97652 1.21125 1.00257 1.00897
0.92596 1.17625 0.93636 0.92648 0.87853 1.41140 1.19166 1.23063
1.24103 1.21465 0.97399 0.89540 0.98965 1.20705 0.97913 1.04097
1.00638 1.20788 1.00296 0.98798 1.01605 1.21721 0.92067 1.03524
0.96878 1.22685 1.00797 0.92488 1.01908 1.22894 1.02961 1.04111
0.91584 1.23402 1.01699 0.96782 1.00551 0.93419 0.78023 0.94757
0.95635 0.76152 0.84378 0.84713 0.84835 0.84817 0.83316 0.85119
0.85026 0.82750 0.87267 0.89232 0.89519 0.89727 0.86345
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -27.68 13.06 55.49 0.72 -26.96 16
2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16
3 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16
4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16
5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
7 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16
8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16
9 N -0.73 -17.81 5.43 -59.91 -0.33 -18.13 16
10 C 0.15 2.83 5.80 -4.04 -0.02 2.81 16
11 C 0.17 2.83 2.59 -67.93 -0.18 2.66 16
12 H 0.09 1.78 7.58 -51.93 -0.39 1.39 16
13 N -0.70 -10.97 3.00 -54.84 -0.16 -11.13 16
14 C 0.55 8.94 6.43 -12.45 -0.08 8.86 16
15 O -0.51 -9.39 9.63 5.29 0.05 -9.34 16
16 C -0.13 -1.86 5.87 -104.82 -0.62 -2.48 16
17 C -0.07 -0.81 9.52 -39.20 -0.37 -1.19 16
18 C -0.12 -1.21 10.02 -39.62 -0.40 -1.61 16
19 C -0.08 -0.76 10.03 -39.53 -0.40 -1.15 16
20 C -0.13 -1.39 9.77 -39.45 -0.39 -1.78 16
21 C 0.17 2.39 5.85 -83.36 -0.49 1.90 16
22 N -0.40 -5.87 2.10 -60.69 -0.13 -6.00 16
23 C 0.05 0.80 7.94 -16.62 -0.13 0.66 16
24 C -0.21 -3.04 10.86 -39.76 -0.43 -3.47 16
25 C -0.19 -2.68 10.86 -39.76 -0.43 -3.11 16
26 C -0.02 -0.23 11.23 -16.62 -0.19 -0.42 16
27 C -0.16 -2.23 5.70 -90.62 -0.52 -2.74 16
28 C -0.18 -2.24 9.74 -26.63 -0.26 -2.50 16
29 C -0.19 -2.54 9.83 -26.63 -0.26 -2.80 16
30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
31 H 0.39 10.10 7.33 -40.82 -0.30 9.80 16
32 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16
33 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16
34 H 0.40 6.00 6.67 -40.82 -0.27 5.73 16
35 H 0.14 1.60 6.45 -52.49 -0.34 1.27 16
36 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16
37 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16
38 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16
39 H 0.15 2.10 7.29 -52.49 -0.38 1.72 16
40 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16
41 H 0.13 1.58 8.06 -52.48 -0.42 1.15 16
42 H 0.16 1.87 8.06 -52.49 -0.42 1.44 16
43 H 0.11 1.42 8.11 -51.93 -0.42 1.00 16
44 H 0.09 1.15 6.67 -51.93 -0.35 0.80 16
45 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16
46 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16
47 H 0.12 1.83 4.29 -51.93 -0.22 1.61 16
LS Contribution 383.10 15.07 5.77 5.77
Total: -1.00 -32.07 383.10 -10.95 -43.02
By element:
Atomic # 1 Polarization: 25.77 SS G_CDS: -6.45 Total: 19.32 kcal
Atomic # 6 Polarization: -8.10 SS G_CDS: -5.40 Total: -13.50 kcal
Atomic # 7 Polarization: -62.34 SS G_CDS: 0.11 Total: -62.23 kcal
Atomic # 8 Polarization: -9.39 SS G_CDS: 0.05 Total: -9.34 kcal
Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal
Total LS contribution 5.77 Total: 5.77 kcal
Total: -32.07 -10.95 -43.02 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001498816639.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 149.104 kcal
(2) G-P(sol) polarization free energy of solvation -32.072 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.032 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.946 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.017 kcal
(6) G-S(sol) free energy of system = (1) + (5) 106.086 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds