Wall clock time and date at job start Tue Mar 31 2020 22:21:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86803 * 119.99672 * 2 1
4 4 H 1.48503 * 109.46697 * 179.97438 * 3 2 1
5 5 H 1.48492 * 109.47275 * 300.00013 * 3 2 1
6 6 H 1.48503 * 109.47012 * 60.00353 * 3 2 1
7 7 C 1.38801 * 120.00011 * 179.97438 * 2 1 3
8 8 H 1.08006 * 120.00019 * 180.02562 * 7 2 1
9 9 N 1.36942 * 120.00458 * 0.02562 * 7 2 1
10 10 C 1.46500 * 120.00244 * 179.97438 * 9 7 2
11 11 C 1.52998 * 109.47071 * 180.02562 * 10 9 7
12 12 H 1.08997 * 109.47589 * 295.00690 * 11 10 9
13 13 N 1.46500 * 109.47003 * 55.00255 * 11 10 9
14 14 C 1.34773 * 120.00509 * 204.99732 * 13 11 10
15 15 O 1.21721 * 119.99643 * 0.02562 * 14 13 11
16 16 C 1.46586 * 120.00540 * 179.97438 * 14 13 11
17 17 C 1.38047 * 126.00751 * 180.02562 * 16 14 13
18 18 C 1.39359 * 107.43899 * 180.02562 * 17 16 14
19 19 C 1.37820 * 107.65803 * 359.97438 * 18 17 16
20 20 C 1.47809 * 125.82477 * 179.97438 * 19 18 17
21 21 C 1.39595 * 120.14576 * 179.74895 * 20 19 18
22 22 C 1.37948 * 119.85103 * 179.77188 * 21 20 19
23 23 C 1.38369 * 120.14720 * 0.50512 * 22 21 20
24 24 C 1.38359 * 120.29246 * 359.74878 * 23 22 21
25 25 C 1.37950 * 120.15023 * 359.97438 * 24 23 22
26 26 N 1.36404 * 108.34801 * 359.73763 * 19 18 17
27 27 H 0.96998 * 125.71860 * 180.29808 * 26 19 18
28 28 C 1.52996 * 109.47215 * 175.00179 * 11 10 9
29 29 C 1.53002 * 117.49888 * 111.25646 * 28 11 10
30 30 C 1.53000 * 117.50107 * 179.91408 * 28 11 10
31 31 H 0.97001 * 120.00226 * 0.02562 * 1 2 3
32 32 H 0.96999 * 119.99631 * 0.02562 * 9 7 2
33 33 H 1.08997 * 109.46694 * 60.00472 * 10 9 7
34 34 H 1.08996 * 109.47259 * 300.00462 * 10 9 7
35 35 H 0.97006 * 119.99923 * 24.99965 * 13 11 10
36 36 H 1.08003 * 126.27694 * 359.96474 * 17 16 14
37 37 H 1.08009 * 126.16755 * 179.97438 * 18 17 16
38 38 H 1.07998 * 120.07472 * 0.02562 * 21 20 19
39 39 H 1.08001 * 119.92852 * 180.26076 * 22 21 20
40 40 H 1.07998 * 119.84917 * 179.76705 * 23 22 21
41 41 H 1.08003 * 119.92335 * 180.02562 * 24 23 22
42 42 H 1.08005 * 120.07458 * 180.02562 * 25 24 23
43 43 H 1.09002 * 115.54951 * 325.58620 * 28 11 10
44 44 H 1.09000 * 117.49996 * 215.00804 * 29 28 11
45 45 H 1.08999 * 117.49664 * 0.02562 * 29 28 11
46 46 H 1.09008 * 117.49673 * 359.97438 * 30 28 11
47 47 H 1.08999 * 117.49942 * 144.97366 * 30 28 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.7101 1.3464 0.0006
5 1 1.8914 2.3965 -1.2124
6 1 1.8914 2.3964 1.2126
7 6 2.0102 -1.2020 0.0005
8 1 3.0903 -1.2021 0.0010
9 7 1.3256 -2.3881 0.0005
10 6 2.0581 -3.6568 0.0005
11 6 1.0640 -4.8197 -0.0001
12 1 0.4973 -4.8139 0.9309
13 7 0.1449 -4.6758 -1.1319
14 6 -1.0795 -5.2367 -1.0813
15 8 -1.4220 -5.8624 -0.0950
16 6 -1.9993 -5.0923 -2.2136
17 6 -3.2756 -5.6121 -2.2937
18 6 -3.7994 -5.2441 -3.5316
19 6 -2.8391 -4.5060 -4.1892
20 6 -2.9747 -3.9153 -5.5373
21 6 -1.9237 -3.1815 -6.0902
22 6 -2.0550 -2.6369 -7.3508
23 6 -3.2291 -2.8077 -8.0627
24 6 -4.2766 -3.5294 -7.5184
25 6 -4.1564 -4.0841 -6.2611
26 7 -1.7443 -4.4091 -3.3814
27 1 -0.9228 -3.9396 -3.5950
28 6 1.8248 -6.1411 -0.1258
29 6 1.8338 -7.0695 1.0903
30 6 1.0023 -7.4311 -0.1430
31 1 -0.4850 0.8400 -0.0004
32 1 0.3556 -2.3881 -0.0002
33 1 2.6847 -3.7144 0.8906
34 1 2.6849 -3.7145 -0.8894
35 1 0.4177 -4.1769 -1.9178
36 1 -3.7760 -6.1975 -1.5365
37 1 -4.7810 -5.4926 -3.9077
38 1 -1.0083 -3.0440 -5.5339
39 1 -1.2410 -2.0726 -7.7814
40 1 -3.3281 -2.3761 -9.0477
41 1 -5.1903 -3.6594 -8.0795
42 1 -4.9747 -4.6476 -5.8376
43 1 2.7239 -6.1092 -0.7413
44 1 2.7387 -7.6484 1.2749
45 1 1.2973 -6.7391 1.9797
46 1 -0.0810 -7.3384 -0.0643
47 1 1.3600 -8.2477 -0.7701
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001498877918.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:21:24
Heat of formation + Delta-G solvation = 48.640259 kcal
Electronic energy + Delta-G solvation = -28511.225676 eV
Core-core repulsion = 24659.567104 eV
Total energy + Delta-G solvation = -3851.658572 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-42.38718 -40.77610 -39.60059 -38.32105 -36.66423 -35.10320 -33.25933 -32.87960
-32.44434 -31.51745 -30.12473 -28.73653 -26.02205 -24.69858 -23.67838 -23.33409
-23.09399 -22.58835 -21.65249 -21.25519 -20.77206 -19.91608 -19.11089 -17.84918
-17.40960 -16.81263 -16.70553 -16.55504 -15.97386 -15.76701 -15.57537 -15.52455
-15.09240 -15.04658 -14.81410 -14.56916 -14.38804 -14.27983 -13.88611 -13.61602
-13.54592 -13.41455 -13.22322 -12.86253 -12.74764 -12.51860 -12.30623 -12.21127
-12.07049 -11.91057 -11.88453 -11.39656 -11.17253 -11.03758 -10.93188 -10.44858
-10.09604 -10.04285 -9.89219 -9.06310 -8.65386 -7.97889 -5.28405 -0.20501
0.47476 0.73319 1.45285 1.46762 1.56371 1.81079 1.92966 2.06428
2.34458 2.52553 2.97035 2.99946 3.36741 3.53451 3.59958 3.80487
3.89866 3.95318 4.05340 4.09042 4.14632 4.26083 4.27241 4.30575
4.40679 4.42548 4.55246 4.58621 4.60194 4.80610 4.84733 4.87296
5.02355 5.04798 5.06060 5.11731 5.13034 5.26848 5.32548 5.41119
5.46777 5.50300 5.51692 5.59641 5.78955 5.86279 6.03637 6.21851
6.28482 6.50439 7.11844 7.29563 8.01490 8.25803 9.24999
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.007107 B = 0.003760 C = 0.002690
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3938.898717 B = 7444.724705 C =10404.819680
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.968 5.968
2 C -0.071 4.071
3 Si 0.972 3.028
4 H -0.264 1.264
5 H -0.293 1.293
6 H -0.297 1.297
7 C -0.244 4.244
8 H 0.080 0.920
9 N -0.743 5.743
10 C 0.150 3.850
11 C 0.179 3.821
12 H 0.061 0.939
13 N -0.703 5.703
14 C 0.588 3.412
15 O -0.563 6.563
16 C -0.062 4.062
17 C -0.115 4.115
18 C -0.189 4.189
19 C 0.085 3.915
20 C -0.041 4.041
21 C -0.135 4.135
22 C -0.124 4.124
23 C -0.120 4.120
24 C -0.117 4.117
25 C -0.104 4.104
26 N -0.524 5.524
27 H 0.421 0.579
28 C -0.166 4.166
29 C -0.161 4.161
30 C -0.183 4.183
31 H 0.250 0.750
32 H 0.373 0.627
33 H 0.040 0.960
34 H 0.041 0.959
35 H 0.401 0.599
36 H 0.152 0.848
37 H 0.173 0.827
38 H 0.116 0.884
39 H 0.139 0.861
40 H 0.148 0.852
41 H 0.154 0.846
42 H 0.146 0.854
43 H 0.122 0.878
44 H 0.117 0.883
45 H 0.083 0.917
46 H 0.093 0.907
47 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.799 -12.771 -16.093 21.098
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.619 5.619
2 C -0.264 4.264
3 Si 0.801 3.199
4 H -0.188 1.188
5 H -0.220 1.220
6 H -0.225 1.225
7 C -0.375 4.375
8 H 0.098 0.902
9 N -0.386 5.386
10 C 0.023 3.977
11 C 0.075 3.925
12 H 0.080 0.920
13 N -0.352 5.352
14 C 0.378 3.622
15 O -0.443 6.443
16 C -0.176 4.176
17 C -0.142 4.142
18 C -0.213 4.213
19 C -0.032 4.032
20 C -0.042 4.042
21 C -0.154 4.154
22 C -0.141 4.141
23 C -0.138 4.138
24 C -0.134 4.134
25 C -0.123 4.123
26 N -0.120 5.120
27 H 0.260 0.740
28 C -0.186 4.186
29 C -0.198 4.198
30 C -0.220 4.220
31 H 0.058 0.942
32 H 0.205 0.795
33 H 0.058 0.942
34 H 0.059 0.941
35 H 0.236 0.764
36 H 0.170 0.830
37 H 0.191 0.809
38 H 0.134 0.866
39 H 0.157 0.843
40 H 0.166 0.834
41 H 0.172 0.828
42 H 0.164 0.836
43 H 0.140 0.860
44 H 0.135 0.865
45 H 0.101 0.899
46 H 0.111 0.889
47 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges -4.648 -13.036 -15.340 20.661
hybrid contribution 0.629 1.674 0.082 1.790
sum -4.019 -11.363 -15.259 19.445
Atomic orbital electron populations
1.69845 1.06702 1.25916 1.59394 1.25539 0.96241 1.01039 1.03557
0.85097 0.78386 0.79883 0.76510 1.18774 1.22028 1.22498 1.19661
0.91606 0.84990 1.41251 0.90189 1.42535 1.05581 1.00948 1.89573
1.21053 0.93285 0.83737 0.99610 1.20610 0.89467 0.93626 0.88808
0.92048 1.45782 1.14473 1.54304 1.20625 1.17212 0.80952 0.78481
0.85591 1.90726 1.76647 1.43630 1.33321 1.20383 0.98856 1.09061
0.89326 1.21388 0.92279 1.01842 0.98690 1.21357 1.00707 1.04502
0.94715 1.19506 0.88153 1.03272 0.92313 1.18230 0.96197 0.99252
0.90552 1.21332 0.98371 0.98692 0.96992 1.21332 0.99180 0.99561
0.94071 1.21631 0.92976 0.98285 1.00952 1.21461 1.00024 0.96926
0.95035 1.21408 0.96287 0.99722 0.94843 1.42038 1.15511 1.41107
1.13298 0.74030 1.22561 1.01805 0.89953 1.04276 1.22987 1.02660
1.02322 0.91858 1.23205 0.99446 0.97644 1.01753 0.94158 0.79513
0.94215 0.94075 0.76438 0.83019 0.80914 0.86613 0.84306 0.83397
0.82798 0.83601 0.86023 0.86453 0.89892 0.88895 0.87846
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -58.99 13.06 21.65 0.28 -58.71 16
2 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16
3 Si 0.97 45.41 29.55 68.60 2.03 47.44 16
4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16
5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16
6 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16
7 C -0.24 -13.17 9.99 84.03 0.84 -12.33 16
8 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16
9 N -0.74 -36.63 5.43 -343.46 -1.87 -38.49 16
10 C 0.15 5.71 5.80 86.38 0.50 6.21 16
11 C 0.18 6.13 2.43 44.99 0.11 6.24 16
12 H 0.06 2.47 7.33 -2.39 -0.02 2.45 16
13 N -0.70 -23.38 4.49 -446.59 -2.01 -25.39 16
14 C 0.59 20.94 7.12 86.42 0.61 21.55 16
15 O -0.56 -22.80 13.90 -4.41 -0.06 -22.86 16
16 C -0.06 -1.97 7.04 40.36 0.28 -1.69 16
17 C -0.12 -3.34 10.60 22.49 0.24 -3.10 16
18 C -0.19 -4.57 10.22 22.44 0.23 -4.34 16
19 C 0.09 2.15 6.93 40.87 0.28 2.43 16
20 C -0.04 -0.92 5.87 -20.09 -0.12 -1.03 16
21 C -0.14 -2.90 9.70 22.53 0.22 -2.68 16
22 C -0.12 -2.19 10.03 22.23 0.22 -1.96 16
23 C -0.12 -1.75 10.04 22.33 0.22 -1.53 16
24 C -0.12 -1.65 10.03 22.23 0.22 -1.42 16
25 C -0.10 -1.81 9.56 22.53 0.22 -1.59 16
26 N -0.52 -14.24 5.90 -172.31 -1.02 -15.26 16
27 H 0.42 10.32 7.24 -92.71 -0.67 9.65 16
28 C -0.17 -4.57 5.36 -10.79 -0.06 -4.62 16
29 C -0.16 -4.05 10.18 30.62 0.31 -3.74 16
30 C -0.18 -4.99 9.73 30.62 0.30 -4.69 16
31 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16
32 H 0.37 20.18 7.33 -92.71 -0.68 19.50 16
33 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16
34 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16
35 H 0.40 12.46 7.71 -92.70 -0.71 11.75 16
36 H 0.15 4.17 8.06 -2.91 -0.02 4.14 16
37 H 0.17 3.00 7.26 -2.91 -0.02 2.98 16
38 H 0.12 2.40 7.14 -2.91 -0.02 2.38 16
39 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16
40 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16
41 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16
42 H 0.15 1.93 6.98 -2.91 -0.02 1.91 16
43 H 0.12 2.91 8.11 -2.39 -0.02 2.89 16
44 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16
45 H 0.08 2.30 8.05 -2.39 -0.02 2.28 16
46 H 0.09 3.09 5.02 -2.38 -0.01 3.08 16
47 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16
Total: -1.00 -70.40 392.91 1.42 -68.97
By element:
Atomic # 1 Polarization: 57.19 SS G_CDS: -1.04 Total: 56.15 kcal
Atomic # 6 Polarization: -16.95 SS G_CDS: 5.10 Total: -11.84 kcal
Atomic # 7 Polarization: -133.24 SS G_CDS: -4.61 Total: -137.85 kcal
Atomic # 8 Polarization: -22.80 SS G_CDS: -0.06 Total: -22.86 kcal
Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal
Total: -70.40 1.42 -68.97 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001498877918.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 117.613 kcal
(2) G-P(sol) polarization free energy of solvation -70.396 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.217 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.972 kcal
(6) G-S(sol) free energy of system = (1) + (5) 48.640 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds