Wall clock time and date at job start Tue Mar 31 2020 22:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 119.99998 * 2 1 4 4 H 1.48504 * 109.47060 * 274.37741 * 3 2 1 5 5 H 1.48497 * 109.47595 * 34.37464 * 3 2 1 6 6 H 1.48498 * 109.47249 * 154.37691 * 3 2 1 7 7 C 1.38810 * 119.99476 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99350 * 196.79658 * 7 2 1 9 9 N 1.36930 * 120.00703 * 17.07542 * 7 2 1 10 10 C 1.47083 * 120.87920 * 26.56037 * 9 7 2 11 11 C 1.53700 * 108.27678 * 128.75385 * 10 9 7 12 12 N 1.46896 * 109.25175 * 54.08432 * 11 10 9 13 13 C 1.46909 * 110.99640 * 172.60587 * 12 11 10 14 14 C 1.52999 * 109.47104 * 314.30093 * 13 12 11 15 15 N 1.46505 * 109.46814 * 179.97438 * 14 13 12 16 16 C 1.34774 * 119.99799 * 180.02562 * 15 14 13 17 17 O 1.21285 * 120.00099 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.00036 * 179.97438 * 16 15 14 19 19 H 1.09003 * 109.46014 * 40.02026 * 18 16 15 20 20 C 1.53042 * 109.46239 * 280.05138 * 18 16 15 21 21 C 1.50812 * 109.18320 * 286.67951 * 20 18 16 22 22 O 1.21227 * 120.01751 * 145.78881 * 21 20 18 23 23 N 1.34564 * 119.96358 * 325.76721 * 21 20 18 24 24 C 1.34338 * 120.99111 * 4.43746 * 23 21 20 25 25 O 1.21530 * 119.21217 * 192.04102 * 24 23 21 26 26 N 1.34292 * 121.57858 * 12.01839 * 24 23 21 27 27 C 1.46894 * 111.27227 * 296.75524 * 12 11 10 28 28 C 1.47079 * 120.88533 * 206.84124 * 9 7 2 29 29 H 0.97006 * 119.99965 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.63342 * 248.52893 * 10 9 7 31 31 H 1.09005 * 109.62598 * 9.10494 * 10 9 7 32 32 H 1.08995 * 109.64561 * 294.08165 * 11 10 9 33 33 H 1.09003 * 109.41817 * 173.94847 * 11 10 9 34 34 H 1.09000 * 109.47006 * 74.30085 * 13 12 11 35 35 H 1.09003 * 109.46545 * 194.30181 * 13 12 11 36 36 H 1.09000 * 109.47183 * 299.99884 * 14 13 12 37 37 H 1.09001 * 109.46923 * 59.99945 * 14 13 12 38 38 H 0.96998 * 119.99946 * 0.02562 * 15 14 13 39 39 H 1.08995 * 109.51912 * 46.59057 * 20 18 16 40 40 H 1.08999 * 109.51557 * 166.77214 * 20 18 16 41 41 H 0.96998 * 119.50582 * 184.45620 * 23 21 20 42 42 H 0.97008 * 119.53253 * 185.66515 * 26 24 23 43 43 H 1.09003 * 109.49343 * 303.14567 * 27 12 11 44 44 H 1.08998 * 109.49508 * 183.06967 * 27 12 11 45 45 H 1.09001 * 109.62459 * 350.89467 * 28 9 7 46 46 H 1.08997 * 109.62804 * 111.47490 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4051 2.0998 -1.3960 5 1 1.4970 2.6242 0.7904 6 1 3.5909 1.4152 0.6054 7 6 2.0102 -1.2022 -0.0005 8 1 3.0556 -1.2222 0.2698 9 7 1.3708 -2.3618 -0.3492 10 6 0.2056 -2.3409 -1.2465 11 6 0.4494 -3.3535 -2.3769 12 7 0.7599 -4.6653 -1.7933 13 6 0.8276 -5.7012 -2.8329 14 6 -0.3677 -5.5553 -3.7768 15 7 -0.2998 -6.5879 -4.8138 16 6 -1.2545 -6.6537 -5.7628 17 8 -2.1696 -5.8577 -5.7585 18 6 -1.1844 -7.7155 -6.8299 19 1 -0.8548 -8.6550 -6.3862 20 6 -0.1907 -7.2863 -7.9118 21 6 -0.8034 -6.1836 -8.7381 22 8 -0.1033 -5.3014 -9.1868 23 7 -2.1275 -6.1796 -8.9776 24 6 -2.9343 -7.0967 -8.4183 25 8 -4.0761 -7.2059 -8.8200 26 7 -2.5093 -7.8959 -7.4263 27 6 2.0035 -4.6206 -1.0129 28 6 1.8272 -3.6606 0.1684 29 1 -0.4850 0.8401 0.0004 30 1 -0.6901 -2.6172 -0.6902 31 1 0.0853 -1.3425 -1.6672 32 1 1.2859 -3.0218 -2.9918 33 1 -0.4466 -3.4320 -2.9926 34 1 1.7528 -5.5887 -3.3981 35 1 0.8041 -6.6860 -2.3664 36 1 -1.2929 -5.6677 -3.2116 37 1 -0.3442 -4.5704 -4.2431 38 1 0.4323 -7.2242 -4.8174 39 1 0.7244 -6.9246 -7.4429 40 1 0.0393 -8.1372 -8.5531 41 1 -2.5052 -5.5046 -9.5629 42 1 -3.0884 -8.6025 -7.1001 43 1 2.8185 -4.2713 -1.6470 44 1 2.2347 -5.6182 -0.6395 45 1 2.7795 -3.5352 0.6836 46 1 1.0845 -4.0613 0.8582 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566652458.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:41 Heat of formation + Delta-G solvation = -51.260616 kcal Electronic energy + Delta-G solvation = -29773.040863 eV Core-core repulsion = 25506.201001 eV Total energy + Delta-G solvation = -4266.839862 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.27346 -39.96159 -39.23646 -38.35800 -36.36668 -35.57173 -34.70031 -34.10866 -31.83309 -31.28657 -29.98926 -29.02769 -26.70694 -25.51400 -23.91941 -23.54606 -22.65496 -21.72963 -21.29341 -20.26530 -19.17723 -18.68790 -18.42044 -17.61486 -16.87405 -16.83928 -16.51405 -16.10311 -15.85902 -15.24981 -15.05212 -14.94643 -14.66703 -14.51913 -14.31244 -13.98251 -13.92686 -13.50744 -13.47032 -13.06781 -12.99583 -12.93664 -12.50870 -11.76852 -11.55759 -11.33618 -11.22645 -11.07093 -10.87982 -10.76560 -10.72636 -10.60641 -10.48802 -10.35478 -10.08625 -9.77716 -9.74487 -9.64331 -9.34968 -8.52354 -7.94481 -6.69251 -5.79277 -3.21239 1.26352 1.90220 2.14158 2.39149 2.76763 2.83791 3.37414 3.44371 3.45833 3.64857 3.78422 4.02915 4.26675 4.37365 4.45415 4.49510 4.68116 4.79464 5.02708 5.37009 5.38323 5.39518 5.40170 5.72313 5.76238 5.81427 5.85325 5.91879 5.99441 6.09724 6.16300 6.23341 6.28021 6.48416 6.63727 6.76820 6.87894 7.01865 7.04073 7.19899 7.46514 7.58402 7.66342 7.71180 7.75722 7.79463 8.42058 9.19575 9.82843 10.41108 11.29411 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017343 B = 0.002238 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.116334 B =12507.492212 C =13124.280789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.178 3.822 11 C 0.025 3.975 12 N -0.528 5.528 13 C 0.045 3.955 14 C 0.113 3.887 15 N -0.720 5.720 16 C 0.486 3.514 17 O -0.514 6.514 18 C 0.122 3.878 19 H 0.137 0.863 20 C -0.150 4.150 21 C 0.523 3.477 22 O -0.493 6.493 23 N -0.670 5.670 24 C 0.726 3.274 25 O -0.553 6.553 26 N -0.707 5.707 27 C 0.046 3.954 28 C 0.148 3.852 29 H 0.254 0.746 30 H 0.028 0.972 31 H 0.089 0.911 32 H 0.027 0.973 33 H 0.067 0.933 34 H 0.033 0.967 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.400 0.600 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.429 0.571 42 H 0.429 0.571 43 H 0.029 0.971 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.174 -22.660 -14.951 27.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.052 3.948 11 C -0.104 4.104 12 N -0.254 5.254 13 C -0.084 4.084 14 C -0.010 4.010 15 N -0.373 5.373 16 C 0.268 3.732 17 O -0.388 6.388 18 C 0.012 3.988 19 H 0.154 0.846 20 C -0.190 4.190 21 C 0.310 3.690 22 O -0.364 6.364 23 N -0.340 5.340 24 C 0.426 3.574 25 O -0.427 6.427 26 N -0.366 5.366 27 C -0.084 4.084 28 C 0.021 3.979 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.107 0.893 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.051 0.949 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.235 0.765 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.270 0.730 42 H 0.269 0.731 43 H 0.047 0.953 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.027 -21.596 -14.995 26.291 hybrid contribution 1.117 0.769 -0.496 1.444 sum 1.089 -20.827 -15.491 25.979 Atomic orbital electron populations 1.70028 1.05208 1.25535 1.53888 1.25042 0.95327 0.98410 1.00940 0.86266 0.79107 0.83748 0.77597 1.21501 1.21723 1.20429 1.19196 0.92544 0.84790 1.41789 0.91614 1.44151 1.34290 1.01299 1.52161 1.20966 0.88962 0.96578 0.88273 1.23159 0.98938 0.89331 0.98941 1.62038 1.34982 1.05774 1.22560 1.22238 0.95624 0.97554 0.92955 1.21660 1.00033 0.90968 0.88336 1.45932 1.27287 1.34984 1.29057 1.20954 0.82901 0.86323 0.83007 1.90822 1.33351 1.40692 1.73940 1.21080 0.84199 1.00532 0.92985 0.84553 1.22259 0.99889 0.99422 0.97475 1.20738 0.81797 0.86639 0.79827 1.90835 1.60419 1.36173 1.48975 1.44156 1.08686 1.32905 1.48218 1.15504 0.83975 0.78453 0.79500 1.91052 1.17025 1.70118 1.64456 1.44725 1.18150 1.36813 1.36889 1.22638 0.89234 0.99526 0.96956 1.20974 0.97890 0.86514 0.92484 0.93559 0.95424 0.89289 0.95498 0.91460 0.94889 0.90684 0.90079 0.90508 0.76549 0.85091 0.85194 0.72970 0.73132 0.95271 0.91950 0.92507 0.95607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.33 11.15 55.49 0.62 -25.71 16 2 C 0.00 0.04 4.93 -17.43 -0.09 -0.05 16 3 Si 0.90 21.76 29.59 -169.99 -5.03 16.73 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.25 -6.95 9.63 -15.06 -0.15 -7.09 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 9 N -0.60 -14.94 3.03 -171.73 -0.52 -15.46 16 10 C 0.18 4.29 5.45 -3.36 -0.02 4.27 16 11 C 0.03 0.48 5.06 -3.46 -0.02 0.46 16 12 N -0.53 -8.64 4.78 -234.02 -1.12 -9.76 16 13 C 0.05 0.52 5.38 -3.82 -0.02 0.50 16 14 C 0.11 1.29 4.93 -4.04 -0.02 1.27 16 15 N -0.72 -5.28 5.56 -60.29 -0.33 -5.61 16 16 C 0.49 4.24 6.71 -10.99 -0.07 4.17 16 17 O -0.51 -7.29 16.15 5.55 0.09 -7.20 16 18 C 0.12 0.49 3.63 -69.11 -0.25 0.24 16 19 H 0.14 -0.10 8.14 -51.93 -0.42 -0.53 16 20 C -0.15 -0.57 5.71 -27.81 -0.16 -0.72 16 21 C 0.52 4.59 7.45 -11.03 -0.08 4.51 16 22 O -0.49 -6.14 17.93 5.60 0.10 -6.04 16 23 N -0.67 -6.10 5.18 -16.02 -0.08 -6.19 16 24 C 0.73 7.08 7.98 -87.74 -0.70 6.38 16 25 O -0.55 -7.35 17.97 5.34 0.10 -7.25 16 26 N -0.71 -4.34 4.91 -60.11 -0.29 -4.63 16 27 C 0.05 0.76 5.58 -3.70 -0.02 0.74 16 28 C 0.15 3.05 6.69 -3.60 -0.02 3.03 16 29 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.09 2.39 6.12 -51.93 -0.32 2.07 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 1.19 5.73 -51.93 -0.30 0.89 16 34 H 0.03 0.36 8.08 -51.93 -0.42 -0.06 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.08 1.06 6.18 -51.93 -0.32 0.74 16 38 H 0.40 1.36 8.47 -40.82 -0.35 1.02 16 39 H 0.13 0.36 8.07 -51.93 -0.42 -0.06 16 40 H 0.13 0.08 8.14 -51.93 -0.42 -0.35 16 41 H 0.43 3.72 8.86 -40.82 -0.36 3.36 16 42 H 0.43 1.86 8.90 -40.82 -0.36 1.50 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 45 H 0.06 1.12 7.95 -51.93 -0.41 0.71 16 46 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 374.49 15.07 5.64 5.64 Total: -1.00 -38.63 374.49 -9.06 -47.69 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -6.61 Total: 0.09 kcal Atomic # 6 Polarization: 19.32 SS G_CDS: -1.62 Total: 17.70 kcal Atomic # 7 Polarization: -65.63 SS G_CDS: -1.73 Total: -67.37 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: 0.29 Total: -20.50 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.63 -9.06 -47.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566652458.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.567 kcal (2) G-P(sol) polarization free energy of solvation -38.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds