Wall clock time and date at job start Tue Mar 31 2020 22:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 119.99998 * 2 1 4 4 H 1.48504 * 109.47060 * 274.37741 * 3 2 1 5 5 H 1.48497 * 109.47595 * 34.37464 * 3 2 1 6 6 H 1.48498 * 109.47249 * 154.37691 * 3 2 1 7 7 C 1.38810 * 119.99476 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99350 * 196.79658 * 7 2 1 9 9 N 1.36930 * 120.00703 * 17.07542 * 7 2 1 10 10 C 1.47083 * 120.87920 * 26.56037 * 9 7 2 11 11 C 1.53700 * 108.27678 * 128.75385 * 10 9 7 12 12 N 1.46896 * 109.25175 * 54.08432 * 11 10 9 13 13 C 1.46909 * 110.99640 * 172.60587 * 12 11 10 14 14 C 1.52999 * 109.47104 * 314.30093 * 13 12 11 15 15 N 1.46505 * 109.46814 * 179.97438 * 14 13 12 16 16 C 1.34774 * 119.99799 * 180.02562 * 15 14 13 17 17 O 1.21285 * 120.00099 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.00036 * 179.97438 * 16 15 14 19 19 H 1.09003 * 109.46014 * 40.02026 * 18 16 15 20 20 C 1.53042 * 109.46239 * 280.05138 * 18 16 15 21 21 C 1.50812 * 109.18320 * 286.67951 * 20 18 16 22 22 O 1.21227 * 120.01751 * 145.78881 * 21 20 18 23 23 N 1.34564 * 119.96358 * 325.76721 * 21 20 18 24 24 C 1.34338 * 120.99111 * 4.43746 * 23 21 20 25 25 O 1.21530 * 119.21217 * 192.04102 * 24 23 21 26 26 N 1.34292 * 121.57858 * 12.01839 * 24 23 21 27 27 C 1.46894 * 111.27227 * 296.75524 * 12 11 10 28 28 C 1.47079 * 120.88533 * 206.84124 * 9 7 2 29 29 H 0.97006 * 119.99965 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.63342 * 248.52893 * 10 9 7 31 31 H 1.09005 * 109.62598 * 9.10494 * 10 9 7 32 32 H 1.08995 * 109.64561 * 294.08165 * 11 10 9 33 33 H 1.09003 * 109.41817 * 173.94847 * 11 10 9 34 34 H 1.09000 * 109.47006 * 74.30085 * 13 12 11 35 35 H 1.09003 * 109.46545 * 194.30181 * 13 12 11 36 36 H 1.09000 * 109.47183 * 299.99884 * 14 13 12 37 37 H 1.09001 * 109.46923 * 59.99945 * 14 13 12 38 38 H 0.96998 * 119.99946 * 0.02562 * 15 14 13 39 39 H 1.08995 * 109.51912 * 46.59057 * 20 18 16 40 40 H 1.08999 * 109.51557 * 166.77214 * 20 18 16 41 41 H 0.96998 * 119.50582 * 184.45620 * 23 21 20 42 42 H 0.97008 * 119.53253 * 185.66515 * 26 24 23 43 43 H 1.09003 * 109.49343 * 303.14567 * 27 12 11 44 44 H 1.08998 * 109.49508 * 183.06967 * 27 12 11 45 45 H 1.09001 * 109.62459 * 350.89467 * 28 9 7 46 46 H 1.08997 * 109.62804 * 111.47490 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4051 2.0998 -1.3960 5 1 1.4970 2.6242 0.7904 6 1 3.5909 1.4152 0.6054 7 6 2.0102 -1.2022 -0.0005 8 1 3.0556 -1.2222 0.2698 9 7 1.3708 -2.3618 -0.3492 10 6 0.2056 -2.3409 -1.2465 11 6 0.4494 -3.3535 -2.3769 12 7 0.7599 -4.6653 -1.7933 13 6 0.8276 -5.7012 -2.8329 14 6 -0.3677 -5.5553 -3.7768 15 7 -0.2998 -6.5879 -4.8138 16 6 -1.2545 -6.6537 -5.7628 17 8 -2.1696 -5.8577 -5.7585 18 6 -1.1844 -7.7155 -6.8299 19 1 -0.8548 -8.6550 -6.3862 20 6 -0.1907 -7.2863 -7.9118 21 6 -0.8034 -6.1836 -8.7381 22 8 -0.1033 -5.3014 -9.1868 23 7 -2.1275 -6.1796 -8.9776 24 6 -2.9343 -7.0967 -8.4183 25 8 -4.0761 -7.2059 -8.8200 26 7 -2.5093 -7.8959 -7.4263 27 6 2.0035 -4.6206 -1.0129 28 6 1.8272 -3.6606 0.1684 29 1 -0.4850 0.8401 0.0004 30 1 -0.6901 -2.6172 -0.6902 31 1 0.0853 -1.3425 -1.6672 32 1 1.2859 -3.0218 -2.9918 33 1 -0.4466 -3.4320 -2.9926 34 1 1.7528 -5.5887 -3.3981 35 1 0.8041 -6.6860 -2.3664 36 1 -1.2929 -5.6677 -3.2116 37 1 -0.3442 -4.5704 -4.2431 38 1 0.4323 -7.2242 -4.8174 39 1 0.7244 -6.9246 -7.4429 40 1 0.0393 -8.1372 -8.5531 41 1 -2.5052 -5.5046 -9.5629 42 1 -3.0884 -8.6025 -7.1001 43 1 2.8185 -4.2713 -1.6470 44 1 2.2347 -5.6182 -0.6395 45 1 2.7795 -3.5352 0.6836 46 1 1.0845 -4.0613 0.8582 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566652458.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:40 Heat of formation + Delta-G solvation = -87.416243 kcal Electronic energy + Delta-G solvation = -29774.608689 eV Core-core repulsion = 25506.201001 eV Total energy + Delta-G solvation = -4268.407687 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.91210 -40.75054 -40.00116 -39.74266 -37.17354 -36.73704 -35.49762 -35.35691 -33.36439 -32.10211 -31.65357 -30.22592 -27.94125 -26.53442 -25.12652 -24.59603 -24.25492 -22.70290 -22.25085 -20.92906 -20.75708 -19.34174 -19.12424 -18.71005 -18.20764 -17.52463 -17.42627 -16.99503 -16.76297 -16.59612 -16.10092 -15.89608 -15.70329 -15.64099 -15.46997 -15.29331 -15.08852 -14.98696 -14.60805 -14.48561 -14.09835 -13.45666 -13.36422 -13.21334 -13.02666 -12.86209 -12.64547 -12.46559 -12.27160 -12.06479 -11.97682 -11.87421 -11.63833 -11.53516 -11.43793 -11.40957 -11.38308 -10.61002 -10.35295 -10.17688 -9.27278 -8.69944 -7.89248 -5.34375 0.58989 1.30614 1.44602 1.46161 1.50587 1.55395 1.76723 2.14102 2.25180 2.49101 3.05495 3.24911 3.26392 3.37958 3.63289 3.67949 3.82096 4.08441 4.09049 4.20750 4.29307 4.34701 4.47902 4.49798 4.54408 4.63075 4.70787 4.81836 4.85881 4.94489 4.97596 5.04553 5.15528 5.19574 5.31386 5.37269 5.59855 5.65842 5.74080 6.11973 6.14443 6.25211 6.35689 6.39456 6.47588 7.06280 7.11199 7.16976 7.82837 8.36542 9.17334 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017343 B = 0.002238 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.116334 B =12507.492212 C =13124.280789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.055 4.055 3 Si 0.968 3.032 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.264 1.264 7 C -0.261 4.261 8 H 0.071 0.929 9 N -0.615 5.615 10 C 0.185 3.815 11 C 0.047 3.953 12 N -0.542 5.542 13 C 0.054 3.946 14 C 0.121 3.879 15 N -0.699 5.699 16 C 0.478 3.522 17 O -0.578 6.578 18 C 0.134 3.866 19 H 0.206 0.794 20 C -0.142 4.142 21 C 0.514 3.486 22 O -0.540 6.540 23 N -0.676 5.676 24 C 0.722 3.278 25 O -0.598 6.598 26 N -0.693 5.693 27 C 0.058 3.942 28 C 0.140 3.860 29 H 0.249 0.751 30 H -0.004 1.004 31 H 0.051 0.949 32 H 0.020 0.980 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.110 0.890 36 H 0.059 0.941 37 H 0.046 0.954 38 H 0.426 0.574 39 H 0.150 0.850 40 H 0.177 0.823 41 H 0.423 0.577 42 H 0.438 0.562 43 H 0.028 0.972 44 H 0.105 0.895 45 H 0.063 0.937 46 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.922 -26.451 -15.246 30.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.250 4.250 3 Si 0.796 3.204 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.189 1.189 7 C -0.391 4.391 8 H 0.089 0.911 9 N -0.339 5.339 10 C 0.059 3.941 11 C -0.082 4.082 12 N -0.267 5.267 13 C -0.074 4.074 14 C -0.003 4.003 15 N -0.353 5.353 16 C 0.263 3.737 17 O -0.456 6.456 18 C 0.025 3.975 19 H 0.223 0.777 20 C -0.181 4.181 21 C 0.304 3.696 22 O -0.414 6.414 23 N -0.343 5.343 24 C 0.423 3.577 25 O -0.475 6.475 26 N -0.351 5.351 27 C -0.071 4.071 28 C 0.015 3.985 29 H 0.058 0.942 30 H 0.014 0.986 31 H 0.070 0.930 32 H 0.038 0.962 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.128 0.872 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.264 0.736 39 H 0.168 0.832 40 H 0.194 0.806 41 H 0.264 0.736 42 H 0.280 0.720 43 H 0.046 0.954 44 H 0.123 0.877 45 H 0.081 0.919 46 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 2.800 -25.495 -15.261 29.845 hybrid contribution 0.251 1.899 -0.353 1.948 sum 3.051 -23.597 -15.614 28.459 Atomic orbital electron populations 1.70200 1.06752 1.25783 1.55646 1.25834 0.96071 1.01654 1.01471 0.85235 0.78322 0.79539 0.77273 1.21531 1.22252 1.18869 1.19566 0.92922 0.85968 1.40672 0.91148 1.44447 1.34223 1.02446 1.52830 1.20688 0.87905 0.96249 0.89302 1.22712 0.99150 0.89873 0.96499 1.61923 1.35289 1.05053 1.24477 1.22288 0.96086 0.97041 0.91998 1.21279 0.99274 0.90882 0.88898 1.45654 1.27844 1.34238 1.27586 1.21930 0.81804 0.86410 0.83558 1.90818 1.35958 1.43330 1.75519 1.21441 0.83044 1.01569 0.91458 0.77709 1.22490 0.99636 0.98873 0.97138 1.21812 0.81119 0.87272 0.79386 1.90814 1.61118 1.38329 1.51145 1.44295 1.09344 1.32666 1.48036 1.15725 0.83405 0.78544 0.80040 1.91017 1.18895 1.71485 1.66112 1.44713 1.19318 1.35761 1.35357 1.22477 0.89040 1.00371 0.95191 1.21191 0.97569 0.85419 0.94363 0.94187 0.98586 0.93032 0.96177 0.90654 0.92992 0.87207 0.92226 0.93612 0.73551 0.83177 0.80603 0.73646 0.71961 0.95396 0.87651 0.91863 0.96615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.12 11.15 21.65 0.24 -56.87 16 2 C -0.06 -3.15 4.93 84.86 0.42 -2.73 16 3 Si 0.97 45.65 29.59 68.60 2.03 47.68 16 4 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.26 -14.52 9.63 84.03 0.81 -13.71 16 8 H 0.07 3.77 7.88 -2.91 -0.02 3.74 16 9 N -0.62 -31.41 3.03 -697.23 -2.11 -33.53 16 10 C 0.18 9.28 5.45 86.50 0.47 9.75 16 11 C 0.05 1.80 5.06 86.54 0.44 2.24 16 12 N -0.54 -16.56 4.78 -894.31 -4.27 -20.83 16 13 C 0.05 1.01 5.38 86.30 0.46 1.48 16 14 C 0.12 2.52 4.93 86.38 0.43 2.94 16 15 N -0.70 -7.57 5.56 -463.05 -2.57 -10.14 16 16 C 0.48 7.02 6.71 87.66 0.59 7.61 16 17 O -0.58 -16.25 16.15 -3.05 -0.05 -16.30 16 18 C 0.13 0.44 3.63 44.28 0.16 0.61 16 19 H 0.21 -1.96 8.14 -2.39 -0.02 -1.98 16 20 C -0.14 -0.42 5.71 29.90 0.17 -0.25 16 21 C 0.51 8.39 7.45 87.73 0.65 9.05 16 22 O -0.54 -13.40 17.93 -2.87 -0.05 -13.45 16 23 N -0.68 -12.39 5.18 -441.65 -2.29 -14.67 16 24 C 0.72 13.74 7.98 179.34 1.43 15.17 16 25 O -0.60 -16.31 17.97 -3.81 -0.07 -16.37 16 26 N -0.69 -6.65 4.91 -462.65 -2.27 -8.92 16 27 C 0.06 1.76 5.58 86.38 0.48 2.24 16 28 C 0.14 5.65 6.69 86.35 0.58 6.23 16 29 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 30 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 31 H 0.05 2.94 6.12 -2.38 -0.01 2.93 16 32 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 2.74 5.73 -2.39 -0.01 2.73 16 34 H 0.05 0.86 8.08 -2.39 -0.02 0.84 16 35 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.05 1.25 6.18 -2.39 -0.01 1.24 16 38 H 0.43 0.32 8.47 -92.71 -0.79 -0.47 16 39 H 0.15 0.01 8.07 -2.39 -0.02 -0.01 16 40 H 0.18 -0.93 8.14 -2.39 -0.02 -0.95 16 41 H 0.42 8.02 8.86 -92.71 -0.82 7.20 16 42 H 0.44 2.53 8.90 -92.70 -0.83 1.71 16 43 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.11 2.34 8.11 -2.39 -0.02 2.32 16 45 H 0.06 2.42 7.95 -2.39 -0.02 2.40 16 46 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -93.66 374.49 -5.70 -99.37 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -1.38 Total: 3.44 kcal Atomic # 6 Polarization: 33.52 SS G_CDS: 7.09 Total: 40.61 kcal Atomic # 7 Polarization: -131.69 SS G_CDS: -13.27 Total: -144.96 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -0.17 Total: -46.13 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -93.66 -5.70 -99.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566652458.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.950 kcal (2) G-P(sol) polarization free energy of solvation -93.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds