Wall clock time and date at job start Tue Mar 31 2020 22:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00192 * 2 1 4 4 H 1.48502 * 109.47193 * 269.99473 * 3 2 1 5 5 H 1.48504 * 109.47248 * 29.99690 * 3 2 1 6 6 H 1.48500 * 109.47281 * 149.99624 * 3 2 1 7 7 C 1.38812 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00631 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99604 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00001 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47414 * 174.26904 * 10 9 7 12 12 H 1.08998 * 109.87155 * 45.91132 * 11 10 9 13 13 C 1.54326 * 110.01225 * 167.01030 * 11 10 9 14 14 C 1.55154 * 102.94087 * 141.68426 * 13 11 10 15 15 C 1.55118 * 101.48809 * 324.33106 * 14 13 11 16 16 N 1.47020 * 109.88354 * 284.89720 * 11 10 9 17 17 C 1.34775 * 125.64912 * 61.44507 * 16 11 10 18 18 O 1.21579 * 119.99985 * 6.47961 * 17 16 11 19 19 C 1.47649 * 119.99952 * 186.47113 * 17 16 11 20 20 C 1.39715 * 120.07843 * 199.08247 * 19 17 16 21 21 C 1.37705 * 119.91988 * 179.97438 * 20 19 17 22 22 C 1.39057 * 120.07986 * 0.02562 * 21 20 19 23 23 N 1.39800 * 119.91975 * 179.97438 * 22 21 20 24 24 C 1.36638 * 125.68068 * 359.69671 * 23 22 21 25 25 C 1.34815 * 108.19430 * 179.83143 * 24 23 22 26 26 C 1.40981 * 107.48294 * 0.42432 * 25 24 23 27 27 C 1.34813 * 107.48449 * 359.73303 * 26 25 24 28 28 C 1.39058 * 120.16010 * 359.97438 * 22 21 20 29 29 C 1.37714 * 120.07717 * 0.02562 * 28 22 21 30 30 H 0.97006 * 119.99791 * 0.02562 * 1 2 3 31 31 H 0.96993 * 120.00073 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47364 * 54.26572 * 10 9 7 33 33 H 1.09003 * 109.46861 * 294.27382 * 10 9 7 34 34 H 1.09006 * 110.71699 * 260.04825 * 13 11 10 35 35 H 1.08994 * 110.72065 * 23.31378 * 13 11 10 36 36 H 1.09000 * 111.00369 * 82.57197 * 14 13 11 37 37 H 1.09000 * 111.00203 * 206.38643 * 14 13 11 38 38 H 1.08997 * 110.49993 * 278.45968 * 15 14 13 39 39 H 1.08998 * 110.35061 * 156.05916 * 15 14 13 40 40 H 1.08008 * 120.03718 * 0.26413 * 20 19 17 41 41 H 1.08007 * 119.95974 * 179.97438 * 21 20 19 42 42 H 1.08001 * 125.90362 * 359.97438 * 24 23 22 43 43 H 1.07999 * 126.25945 * 180.14038 * 25 24 23 44 44 H 1.08007 * 126.26096 * 179.75940 * 26 25 24 45 45 H 1.07996 * 125.90316 * 180.02562 * 27 26 25 46 46 H 1.07995 * 119.96224 * 179.97438 * 28 22 21 47 47 H 1.07994 * 120.03940 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0017 11 6 1.0699 -4.8160 0.1455 12 1 0.2264 -4.6698 -0.5292 13 6 1.7728 -6.1520 -0.1750 14 6 1.1570 -7.1265 0.8634 15 6 0.9901 -6.1996 2.0959 16 7 0.5918 -4.8963 1.5334 17 6 -0.0922 -3.9353 2.1855 18 8 -0.4651 -2.9436 1.5892 19 6 -0.3887 -4.0870 3.6239 20 6 -1.4061 -3.3318 4.2126 21 6 -1.6803 -3.4763 5.5543 22 6 -0.9456 -4.3721 6.3233 23 7 -1.2264 -4.5157 7.6852 24 6 -2.1874 -3.8340 8.3770 25 6 -2.1559 -4.2475 9.6598 26 6 -1.1334 -5.2120 9.7688 27 6 -0.5815 -5.3571 8.5475 28 6 0.0678 -5.1255 5.7408 29 6 0.3475 -4.9862 4.3996 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.7587 -3.6711 0.8364 33 1 2.6062 -3.7607 -0.9347 34 1 1.5430 -6.4748 -1.1905 35 1 2.8497 -6.0653 -0.0313 36 1 0.1935 -7.5043 0.5212 37 1 1.8404 -7.9468 1.0826 38 1 1.9330 -6.1078 2.6349 39 1 0.2110 -6.5822 2.7552 40 1 -1.9800 -2.6389 3.6150 41 1 -2.4663 -2.8924 6.0101 42 1 -2.8582 -3.0937 7.9666 43 1 -2.7938 -3.8998 10.4589 44 1 -0.8453 -5.7388 10.6666 45 1 0.2299 -6.0233 8.2942 46 1 0.6366 -5.8200 6.3411 47 1 1.1343 -5.5719 3.9478 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568142483.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:57 Heat of formation + Delta-G solvation = 95.286886 kcal Electronic energy + Delta-G solvation = -29158.112673 eV Core-core repulsion = 25308.476851 eV Total energy + Delta-G solvation = -3849.635822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.81646 -40.26055 -38.54090 -36.91277 -34.36135 -33.32865 -31.91514 -31.22509 -31.08004 -29.13316 -29.02801 -28.54213 -25.21976 -24.19372 -23.20295 -22.79177 -21.63584 -21.15085 -20.27698 -20.06266 -19.10414 -18.49995 -17.41863 -16.60316 -16.42324 -15.49195 -15.17100 -15.05432 -14.84363 -14.50410 -14.21933 -13.96478 -13.81568 -13.68555 -13.42912 -13.35085 -12.95973 -12.87142 -12.70078 -12.51482 -12.50488 -12.24341 -12.13625 -11.72095 -11.51339 -11.35002 -11.15337 -10.89147 -10.69947 -10.61695 -10.47628 -9.97529 -9.91120 -9.55441 -9.22029 -9.08631 -8.68491 -8.48049 -8.19803 -8.09598 -6.61515 -5.48495 -2.76707 0.54908 1.17496 2.15452 2.63112 2.77884 3.19278 3.28250 3.54237 3.58622 3.60655 3.91573 4.40083 4.51131 4.55807 4.59322 4.75790 4.79997 4.89226 4.92060 4.93453 5.07046 5.13911 5.26559 5.31294 5.38145 5.41091 5.49076 5.57052 5.71755 5.77102 5.78359 5.83809 5.86020 5.95397 5.97444 6.02234 6.08528 6.12804 6.21515 6.29707 6.44371 6.56848 6.61973 6.68391 6.81871 6.97922 6.98939 7.22577 7.86785 7.92468 8.61220 8.80953 9.81713 10.46667 10.87209 11.71987 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010421 B = 0.003315 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.285598 B = 8443.357885 C =10496.993235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 0.897 3.103 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.285 1.285 7 C -0.239 4.239 8 H 0.061 0.939 9 N -0.724 5.724 10 C 0.145 3.855 11 C 0.131 3.869 12 H 0.075 0.925 13 C -0.124 4.124 14 C -0.134 4.134 15 C 0.094 3.906 16 N -0.614 5.614 17 C 0.554 3.446 18 O -0.457 6.457 19 C -0.123 4.123 20 C -0.031 4.031 21 C -0.148 4.148 22 C 0.151 3.849 23 N -0.396 5.396 24 C -0.013 4.013 25 C -0.193 4.193 26 C -0.193 4.193 27 C -0.015 4.015 28 C -0.151 4.151 29 C -0.079 4.079 30 H 0.249 0.751 31 H 0.401 0.599 32 H 0.017 0.983 33 H 0.019 0.981 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.147 0.853 41 H 0.134 0.866 42 H 0.166 0.834 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.165 0.835 46 H 0.132 0.868 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.021 -18.949 14.175 23.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.207 4.207 3 Si 0.729 3.271 4 H -0.220 1.220 5 H -0.220 1.220 6 H -0.211 1.211 7 C -0.371 4.371 8 H 0.079 0.921 9 N -0.375 5.375 10 C 0.016 3.984 11 C 0.028 3.972 12 H 0.093 0.907 13 C -0.163 4.163 14 C -0.172 4.172 15 C -0.029 4.029 16 N -0.351 5.351 17 C 0.342 3.658 18 O -0.327 6.327 19 C -0.127 4.127 20 C -0.050 4.050 21 C -0.167 4.167 22 C 0.058 3.942 23 N -0.067 5.067 24 C -0.139 4.139 25 C -0.217 4.217 26 C -0.217 4.217 27 C -0.142 4.142 28 C -0.170 4.170 29 C -0.097 4.097 30 H 0.059 0.941 31 H 0.243 0.757 32 H 0.035 0.965 33 H 0.036 0.964 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.165 0.835 41 H 0.152 0.848 42 H 0.183 0.817 43 H 0.158 0.842 44 H 0.158 0.842 45 H 0.182 0.818 46 H 0.150 0.850 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.159 -18.142 13.615 22.785 hybrid contribution 0.401 1.013 0.235 1.114 sum -1.759 -17.129 13.849 22.098 Atomic orbital electron populations 1.69752 1.04733 1.24615 1.57191 1.24688 0.95376 0.97101 1.03501 0.86351 0.78666 0.84822 0.77306 1.21995 1.21968 1.21108 1.19136 0.90513 0.84689 1.42746 0.92101 1.42877 1.07236 0.98874 1.88556 1.21013 0.93243 0.86599 0.97588 1.21884 0.97365 0.95441 0.82501 0.90664 1.22638 1.00530 0.93572 0.99544 1.22838 1.01703 0.97355 0.95288 1.22631 0.99594 0.84077 0.96602 1.48302 1.56779 1.16167 1.13886 1.17815 0.79343 0.82724 0.85966 1.90941 1.48225 1.26907 1.66606 1.20113 0.98866 0.99237 0.94478 1.21203 0.94744 0.95565 0.93481 1.20762 1.01790 1.00114 0.94048 1.18056 0.96788 0.97668 0.81655 1.41657 1.27742 1.31704 1.05598 1.21977 0.96998 1.02356 0.92585 1.21001 1.02628 1.02154 0.95931 1.20996 1.00355 1.03302 0.97000 1.21922 1.02341 1.00154 0.89744 1.20695 0.98705 1.02026 0.95590 1.21880 0.98623 0.96380 0.92860 0.94087 0.75742 0.96511 0.96368 0.90100 0.90342 0.90623 0.90093 0.91427 0.90504 0.83489 0.84788 0.81692 0.84206 0.84234 0.81798 0.85029 0.83265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.63 13.06 55.49 0.72 -28.91 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.90 23.78 29.55 -169.99 -5.02 18.76 16 4 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 5 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 6 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 7 C -0.24 -7.22 9.99 -15.06 -0.15 -7.37 16 8 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.72 -19.95 4.48 -59.91 -0.27 -20.22 16 10 C 0.14 3.09 5.62 -4.04 -0.02 3.07 16 11 C 0.13 2.20 3.03 -66.96 -0.20 2.00 16 12 H 0.08 1.40 8.12 -51.93 -0.42 0.98 16 13 C -0.12 -1.41 6.45 -24.90 -0.16 -1.57 16 14 C -0.13 -1.19 7.10 -24.47 -0.17 -1.37 16 15 C 0.09 1.00 4.94 -2.41 -0.01 0.99 16 16 N -0.61 -9.83 3.06 -164.06 -0.50 -10.33 16 17 C 0.55 10.62 7.41 -12.42 -0.09 10.53 16 18 O -0.46 -11.28 13.02 5.30 0.07 -11.21 16 19 C -0.12 -1.93 5.76 -104.95 -0.60 -2.53 16 20 C -0.03 -0.46 9.58 -39.22 -0.38 -0.83 16 21 C -0.15 -1.86 9.43 -39.47 -0.37 -2.23 16 22 C 0.15 1.82 6.62 -83.62 -0.55 1.27 16 23 N -0.40 -4.51 2.97 -60.89 -0.18 -4.69 16 24 C -0.01 -0.13 10.73 -16.62 -0.18 -0.31 16 25 C -0.19 -1.92 10.86 -39.76 -0.43 -2.35 16 26 C -0.19 -1.87 10.86 -39.76 -0.43 -2.30 16 27 C -0.02 -0.15 10.73 -16.62 -0.18 -0.33 16 28 C -0.15 -1.65 9.43 -39.47 -0.37 -2.03 16 29 C -0.08 -0.96 8.10 -39.22 -0.32 -1.28 16 30 H 0.25 7.80 8.31 -40.82 -0.34 7.46 16 31 H 0.40 11.81 4.85 -40.82 -0.20 11.61 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.02 0.39 8.10 -51.93 -0.42 -0.03 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.85 7.86 -51.93 -0.41 0.44 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.64 6.92 -51.93 -0.36 0.28 16 39 H 0.08 0.71 6.59 -51.93 -0.34 0.37 16 40 H 0.15 2.35 7.77 -52.48 -0.41 1.94 16 41 H 0.13 1.40 6.68 -52.48 -0.35 1.05 16 42 H 0.17 1.40 6.99 -52.49 -0.37 1.03 16 43 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 45 H 0.16 1.21 6.99 -52.49 -0.37 0.84 16 46 H 0.13 1.09 6.68 -52.49 -0.35 0.74 16 47 H 0.15 1.52 4.09 -52.49 -0.21 1.30 16 LS Contribution 376.02 15.07 5.67 5.67 Total: -1.00 -37.70 376.02 -10.53 -48.23 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -6.29 Total: 9.75 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -4.73 Total: -7.04 kcal Atomic # 7 Polarization: -63.92 SS G_CDS: -0.23 Total: -64.15 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.07 Total: -11.21 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -5.02 Total: 18.76 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.70 -10.53 -48.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568142483.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.518 kcal (2) G-P(sol) polarization free energy of solvation -37.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds