Wall clock time and date at job start Tue Mar 31 2020 22:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00192 * 2 1 4 4 H 1.48502 * 109.47193 * 269.99473 * 3 2 1 5 5 H 1.48504 * 109.47248 * 29.99690 * 3 2 1 6 6 H 1.48500 * 109.47281 * 149.99624 * 3 2 1 7 7 C 1.38812 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00631 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99604 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00001 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47414 * 174.26904 * 10 9 7 12 12 H 1.08998 * 109.87155 * 45.91132 * 11 10 9 13 13 C 1.54326 * 110.01225 * 167.01030 * 11 10 9 14 14 C 1.55154 * 102.94087 * 141.68426 * 13 11 10 15 15 C 1.55118 * 101.48809 * 324.33106 * 14 13 11 16 16 N 1.47020 * 109.88354 * 284.89720 * 11 10 9 17 17 C 1.34775 * 125.64912 * 61.44507 * 16 11 10 18 18 O 1.21579 * 119.99985 * 6.47961 * 17 16 11 19 19 C 1.47649 * 119.99952 * 186.47113 * 17 16 11 20 20 C 1.39715 * 120.07843 * 199.08247 * 19 17 16 21 21 C 1.37705 * 119.91988 * 179.97438 * 20 19 17 22 22 C 1.39057 * 120.07986 * 0.02562 * 21 20 19 23 23 N 1.39800 * 119.91975 * 179.97438 * 22 21 20 24 24 C 1.36638 * 125.68068 * 359.69671 * 23 22 21 25 25 C 1.34815 * 108.19430 * 179.83143 * 24 23 22 26 26 C 1.40981 * 107.48294 * 0.42432 * 25 24 23 27 27 C 1.34813 * 107.48449 * 359.73303 * 26 25 24 28 28 C 1.39058 * 120.16010 * 359.97438 * 22 21 20 29 29 C 1.37714 * 120.07717 * 0.02562 * 28 22 21 30 30 H 0.97006 * 119.99791 * 0.02562 * 1 2 3 31 31 H 0.96993 * 120.00073 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47364 * 54.26572 * 10 9 7 33 33 H 1.09003 * 109.46861 * 294.27382 * 10 9 7 34 34 H 1.09006 * 110.71699 * 260.04825 * 13 11 10 35 35 H 1.08994 * 110.72065 * 23.31378 * 13 11 10 36 36 H 1.09000 * 111.00369 * 82.57197 * 14 13 11 37 37 H 1.09000 * 111.00203 * 206.38643 * 14 13 11 38 38 H 1.08997 * 110.49993 * 278.45968 * 15 14 13 39 39 H 1.08998 * 110.35061 * 156.05916 * 15 14 13 40 40 H 1.08008 * 120.03718 * 0.26413 * 20 19 17 41 41 H 1.08007 * 119.95974 * 179.97438 * 21 20 19 42 42 H 1.08001 * 125.90362 * 359.97438 * 24 23 22 43 43 H 1.07999 * 126.25945 * 180.14038 * 25 24 23 44 44 H 1.08007 * 126.26096 * 179.75940 * 26 25 24 45 45 H 1.07996 * 125.90316 * 180.02562 * 27 26 25 46 46 H 1.07995 * 119.96224 * 179.97438 * 28 22 21 47 47 H 1.07994 * 120.03940 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0017 11 6 1.0699 -4.8160 0.1455 12 1 0.2264 -4.6698 -0.5292 13 6 1.7728 -6.1520 -0.1750 14 6 1.1570 -7.1265 0.8634 15 6 0.9901 -6.1996 2.0959 16 7 0.5918 -4.8963 1.5334 17 6 -0.0922 -3.9353 2.1855 18 8 -0.4651 -2.9436 1.5892 19 6 -0.3887 -4.0870 3.6239 20 6 -1.4061 -3.3318 4.2126 21 6 -1.6803 -3.4763 5.5543 22 6 -0.9456 -4.3721 6.3233 23 7 -1.2264 -4.5157 7.6852 24 6 -2.1874 -3.8340 8.3770 25 6 -2.1559 -4.2475 9.6598 26 6 -1.1334 -5.2120 9.7688 27 6 -0.5815 -5.3571 8.5475 28 6 0.0678 -5.1255 5.7408 29 6 0.3475 -4.9862 4.3996 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.7587 -3.6711 0.8364 33 1 2.6062 -3.7607 -0.9347 34 1 1.5430 -6.4748 -1.1905 35 1 2.8497 -6.0653 -0.0313 36 1 0.1935 -7.5043 0.5212 37 1 1.8404 -7.9468 1.0826 38 1 1.9330 -6.1078 2.6349 39 1 0.2110 -6.5822 2.7552 40 1 -1.9800 -2.6389 3.6150 41 1 -2.4663 -2.8924 6.0101 42 1 -2.8582 -3.0937 7.9666 43 1 -2.7938 -3.8998 10.4589 44 1 -0.8453 -5.7388 10.6666 45 1 0.2299 -6.0233 8.2942 46 1 0.6366 -5.8200 6.3411 47 1 1.1343 -5.5719 3.9478 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568142483.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:56 Heat of formation + Delta-G solvation = 72.120405 kcal Electronic energy + Delta-G solvation = -29159.117247 eV Core-core repulsion = 25308.476851 eV Total energy + Delta-G solvation = -3850.640396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.62254 -41.46338 -39.57270 -38.25001 -36.27183 -34.42121 -33.31916 -32.77942 -32.12725 -30.47100 -29.84612 -29.68304 -26.80141 -25.50933 -24.41919 -24.04672 -23.07251 -22.08681 -21.13915 -20.88667 -20.35840 -19.39338 -19.19627 -18.13106 -17.58841 -16.86675 -16.51410 -16.01027 -15.97918 -15.89401 -15.32509 -15.26351 -15.05794 -14.82380 -14.69236 -14.59195 -14.43328 -13.99349 -13.75500 -13.66217 -13.43712 -13.22214 -13.18333 -13.08789 -12.95106 -12.88431 -12.65861 -12.29036 -12.26570 -12.00711 -11.74883 -11.60396 -11.47694 -10.92148 -10.87486 -10.65981 -10.20180 -9.53863 -9.22532 -9.03169 -8.83080 -7.82180 -5.10955 -0.46641 0.19285 1.26068 1.39829 1.43920 1.51560 1.80594 2.01667 2.05416 2.08680 2.57097 2.77503 3.44428 3.49987 3.50565 3.65341 3.72247 3.80380 4.01114 4.04562 4.09685 4.15501 4.26814 4.29549 4.36480 4.42581 4.50446 4.59251 4.61498 4.71901 4.79670 4.82774 4.84247 4.91323 4.97655 5.00943 5.05135 5.16063 5.18726 5.24565 5.30944 5.35125 5.41729 5.47126 5.53044 5.64454 5.95881 6.20986 6.34777 6.42311 6.65262 7.31023 7.49429 8.32265 8.59403 9.39191 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010421 B = 0.003315 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.285598 B = 8443.357885 C =10496.993235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.077 4.077 3 Si 0.969 3.031 4 H -0.284 1.284 5 H -0.297 1.297 6 H -0.272 1.272 7 C -0.247 4.247 8 H 0.065 0.935 9 N -0.741 5.741 10 C 0.141 3.859 11 C 0.131 3.869 12 H 0.045 0.955 13 C -0.114 4.114 14 C -0.119 4.119 15 C 0.082 3.918 16 N -0.613 5.613 17 C 0.543 3.457 18 O -0.532 6.532 19 C -0.150 4.150 20 C -0.050 4.050 21 C -0.150 4.150 22 C 0.156 3.844 23 N -0.406 5.406 24 C -0.037 4.037 25 C -0.198 4.198 26 C -0.201 4.201 27 C -0.023 4.023 28 C -0.140 4.140 29 C -0.065 4.065 30 H 0.243 0.757 31 H 0.389 0.611 32 H 0.013 0.987 33 H 0.026 0.974 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.148 0.852 42 H 0.175 0.825 43 H 0.156 0.844 44 H 0.161 0.839 45 H 0.193 0.807 46 H 0.171 0.829 47 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.260 -22.234 16.447 27.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.270 4.270 3 Si 0.798 3.202 4 H -0.211 1.211 5 H -0.224 1.224 6 H -0.197 1.197 7 C -0.379 4.379 8 H 0.083 0.917 9 N -0.391 5.391 10 C 0.013 3.987 11 C 0.027 3.973 12 H 0.063 0.937 13 C -0.152 4.152 14 C -0.156 4.156 15 C -0.038 4.038 16 N -0.348 5.348 17 C 0.333 3.667 18 O -0.408 6.408 19 C -0.154 4.154 20 C -0.070 4.070 21 C -0.170 4.170 22 C 0.062 3.938 23 N -0.078 5.078 24 C -0.162 4.162 25 C -0.222 4.222 26 C -0.224 4.224 27 C -0.149 4.149 28 C -0.160 4.160 29 C -0.084 4.084 30 H 0.052 0.948 31 H 0.229 0.771 32 H 0.031 0.969 33 H 0.044 0.956 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.140 0.860 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.136 0.864 41 H 0.165 0.835 42 H 0.192 0.808 43 H 0.174 0.826 44 H 0.179 0.821 45 H 0.210 0.790 46 H 0.188 0.812 47 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.175 -21.524 15.914 26.769 hybrid contribution -0.314 1.927 -0.350 1.983 sum -0.138 -19.597 15.564 25.026 Atomic orbital electron populations 1.69978 1.06508 1.24910 1.58990 1.25579 0.96323 1.00863 1.04234 0.85217 0.77561 0.79948 0.77488 1.21117 1.22429 1.19682 1.19573 0.90874 0.86129 1.41360 0.91675 1.43159 1.07123 1.00365 1.88443 1.21236 0.94016 0.86057 0.97354 1.21856 0.95699 0.96819 0.82952 0.93695 1.22637 1.00672 0.90595 1.01334 1.22869 1.02712 0.97178 0.92879 1.23066 1.01126 0.81611 0.98040 1.48425 1.55280 1.17486 1.13620 1.18509 0.78590 0.82258 0.87366 1.90891 1.51559 1.30045 1.68342 1.19977 1.00721 1.01740 0.92959 1.21062 0.95427 0.95994 0.94506 1.20815 1.02439 1.00702 0.93011 1.18205 0.96440 0.96940 0.82213 1.41780 1.28361 1.32438 1.05256 1.22348 0.97572 1.03126 0.93175 1.21363 1.02802 1.01948 0.96096 1.21381 1.00027 1.03163 0.97851 1.22497 1.02773 1.00015 0.89575 1.21070 0.98018 1.01716 0.95152 1.22069 0.98083 0.95139 0.93074 0.94819 0.77111 0.96871 0.95622 0.88629 0.89107 0.90260 0.86048 0.89166 0.88624 0.86378 0.83474 0.80779 0.82629 0.82143 0.79032 0.81196 0.80794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -65.20 13.06 21.65 0.28 -64.92 16 2 C -0.08 -4.94 5.50 84.86 0.47 -4.47 16 3 Si 0.97 50.56 29.55 68.60 2.03 52.59 16 4 H -0.28 -14.33 7.11 99.48 0.71 -13.62 16 5 H -0.30 -15.59 7.11 99.48 0.71 -14.89 16 6 H -0.27 -13.41 7.11 99.48 0.71 -12.70 16 7 C -0.25 -15.44 9.99 84.03 0.84 -14.60 16 8 H 0.07 3.90 7.83 -2.91 -0.02 3.87 16 9 N -0.74 -42.97 4.48 -343.45 -1.54 -44.51 16 10 C 0.14 6.19 5.62 86.38 0.49 6.68 16 11 C 0.13 4.44 3.03 45.34 0.14 4.58 16 12 H 0.04 1.78 8.12 -2.39 -0.02 1.76 16 13 C -0.11 -2.29 6.45 31.78 0.20 -2.08 16 14 C -0.12 -1.61 7.10 32.06 0.23 -1.38 16 15 C 0.08 1.50 4.94 86.93 0.43 1.92 16 16 N -0.61 -19.70 3.06 -791.24 -2.42 -22.12 16 17 C 0.54 22.09 7.41 86.73 0.64 22.73 16 18 O -0.53 -28.84 13.02 -3.96 -0.05 -28.89 16 19 C -0.15 -4.86 5.76 -20.08 -0.12 -4.97 16 20 C -0.05 -1.63 9.58 22.50 0.22 -1.41 16 21 C -0.15 -3.86 9.43 22.34 0.21 -3.65 16 22 C 0.16 3.49 6.62 38.26 0.25 3.74 16 23 N -0.41 -8.34 2.97 -346.57 -1.03 -9.36 16 24 C -0.04 -0.72 10.73 83.16 0.89 0.17 16 25 C -0.20 -3.53 10.86 22.16 0.24 -3.29 16 26 C -0.20 -3.29 10.86 22.16 0.24 -3.05 16 27 C -0.02 -0.39 10.73 83.16 0.89 0.50 16 28 C -0.14 -2.63 9.43 22.34 0.21 -2.42 16 29 C -0.07 -1.45 8.10 22.50 0.18 -1.27 16 30 H 0.24 16.07 8.31 -92.70 -0.77 15.30 16 31 H 0.39 24.62 4.85 -92.71 -0.45 24.17 16 32 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.03 1.10 8.10 -2.39 -0.02 1.08 16 34 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.09 1.64 7.86 -2.39 -0.02 1.62 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.12 0.80 8.14 -2.39 -0.02 0.79 16 38 H 0.09 1.29 6.92 -2.39 -0.02 1.28 16 39 H 0.10 1.43 6.59 -2.39 -0.02 1.41 16 40 H 0.12 4.39 7.77 -2.91 -0.02 4.37 16 41 H 0.15 3.20 6.68 -2.91 -0.02 3.18 16 42 H 0.17 2.87 6.99 -2.91 -0.02 2.85 16 43 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 44 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 45 H 0.19 1.90 6.99 -2.91 -0.02 1.88 16 46 H 0.17 1.87 6.68 -2.91 -0.02 1.85 16 47 H 0.18 2.88 4.09 -2.91 -0.01 2.87 16 Total: -1.00 -89.68 376.02 4.47 -85.21 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: 0.55 Total: 34.29 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 6.66 Total: -2.28 kcal Atomic # 7 Polarization: -136.21 SS G_CDS: -4.71 Total: -140.91 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.05 Total: -28.89 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 2.03 Total: 52.59 kcal Total: -89.68 4.47 -85.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568142483.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.329 kcal (2) G-P(sol) polarization free energy of solvation -89.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds