Wall clock time and date at job start Tue Mar 31 2020 22:47:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86796 * 120.00443 * 2 1
4 4 H 1.48503 * 109.47310 * 239.99636 * 3 2 1
5 5 H 1.48502 * 109.46860 * 359.97438 * 3 2 1
6 6 H 1.48505 * 109.47261 * 119.99517 * 3 2 1
7 7 C 1.38816 * 119.99393 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99505 * 164.88494 * 7 2 1
9 9 N 1.36934 * 120.00192 * 344.88813 * 7 2 1
10 10 C 1.47598 * 118.64423 * 331.39337 * 9 7 2
11 11 C 1.53947 * 112.14408 * 222.13495 * 10 9 7
12 12 C 1.50873 * 110.09648 * 40.56705 * 11 10 9
13 13 C 1.52573 * 109.35832 * 268.11544 * 12 11 10
14 14 C 1.47085 * 114.32493 * 85.01249 * 13 12 11
15 15 C 1.44579 * 118.64237 * 151.40483 * 9 7 2
16 16 H 1.09004 * 109.42131 * 209.29887 * 15 9 7
17 17 C 1.53003 * 109.44916 * 329.22467 * 15 9 7
18 18 N 1.46503 * 109.47365 * 305.13944 * 17 15 9
19 19 C 1.34779 * 120.00113 * 180.02562 * 18 17 15
20 20 O 1.21277 * 119.99568 * 359.97438 * 19 18 17
21 21 C 1.50696 * 119.99768 * 180.27744 * 19 18 17
22 22 N 1.46505 * 109.47045 * 179.72522 * 21 19 18
23 23 C 1.36367 * 125.95665 * 269.68492 * 22 21 19
24 24 O 1.35636 * 125.99217 * 0.03918 * 23 22 21
25 25 N 1.30907 * 108.02363 * 179.88664 * 23 22 21
26 26 N 1.40120 * 107.93537 * 0.37032 * 25 23 22
27 27 C 1.30901 * 107.94061 * 359.76660 * 26 25 23
28 28 O 1.35626 * 125.99096 * 179.97438 * 27 26 25
29 29 H 0.97003 * 119.99670 * 0.02562 * 1 2 3
30 30 H 1.09006 * 108.94688 * 101.44635 * 10 9 7
31 31 H 1.09001 * 108.94995 * 342.82507 * 10 9 7
32 32 H 1.09000 * 109.36574 * 280.37240 * 11 10 9
33 33 H 1.09007 * 109.36558 * 160.75887 * 11 10 9
34 34 H 1.08995 * 109.49280 * 148.14931 * 12 11 10
35 35 H 1.09004 * 109.49248 * 28.07878 * 12 11 10
36 36 H 1.09003 * 108.51118 * 323.75581 * 13 12 11
37 37 H 1.09004 * 108.38904 * 206.17582 * 13 12 11
38 38 H 1.09008 * 109.33129 * 176.93819 * 14 13 12
39 39 H 1.09003 * 109.19232 * 57.37241 * 14 13 12
40 40 H 1.08993 * 109.47227 * 185.13888 * 17 15 9
41 41 H 1.09004 * 109.46807 * 65.13683 * 17 15 9
42 42 H 0.97001 * 119.99862 * 359.97438 * 18 17 15
43 43 H 1.09001 * 109.46956 * 299.71754 * 21 19 18
44 44 H 1.08994 * 109.47787 * 59.71785 * 21 19 18
45 45 H 0.96701 * 113.99991 * 89.99798 * 24 23 22
46 46 H 0.96695 * 114.00207 * 270.03118 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6176 0.0000
4 1 3.1042 1.6962 -1.2125
5 1 1.2853 2.7464 -0.0006
6 1 3.1040 1.6963 1.2126
7 6 2.0102 -1.2023 0.0005
8 1 3.0622 -1.2186 -0.2434
9 7 1.3609 -2.3674 0.3102
10 6 0.1977 -2.3098 1.2169
11 6 0.2037 -3.4582 2.2422
12 6 1.6050 -3.6924 2.7500
13 6 2.2850 -4.7515 1.8876
14 6 2.9134 -4.2259 0.6660
15 6 1.8433 -3.6034 -0.2643
16 1 1.0119 -4.2991 -0.3778
17 6 2.4618 -3.3208 -1.6349
18 7 1.4862 -2.6236 -2.4766
19 6 1.8126 -2.2712 -3.7359
20 8 2.9141 -2.5307 -4.1720
21 6 0.8112 -1.5485 -4.5995
22 7 1.4050 -1.2738 -5.9104
23 6 2.1010 -0.1529 -6.2551
24 8 2.3651 0.9021 -5.4446
25 7 2.4723 -0.2749 -7.5044
26 7 1.9950 -1.5041 -7.9784
27 6 1.3533 -2.0917 -7.0004
28 8 0.7434 -3.3016 -7.0606
29 1 -0.4850 0.8401 -0.0004
30 1 -0.7157 -2.3686 0.6250
31 1 0.2112 -1.3592 1.7501
32 1 -0.1659 -4.3676 1.7685
33 1 -0.4454 -3.1992 3.0788
34 1 1.5646 -4.0362 3.7836
35 1 2.1711 -2.7624 2.6976
36 1 1.5410 -5.4950 1.6017
37 1 3.0513 -5.2430 2.4870
38 1 3.4186 -5.0376 0.1422
39 1 3.6429 -3.4630 0.9380
40 1 2.7428 -4.2618 -2.1077
41 1 3.3473 -2.6971 -1.5123
42 1 0.6051 -2.4164 -2.1279
43 1 -0.0754 -2.1700 -4.7255
44 1 0.5315 -0.6089 -4.1232
45 1 3.1927 0.8213 -4.9509
46 1 -0.1827 -3.2620 -7.3356
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001570827415.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:47:03
Heat of formation + Delta-G solvation = 0.312861 kcal
Electronic energy + Delta-G solvation = -31331.142845 eV
Core-core repulsion = 27066.539378 eV
Total energy + Delta-G solvation = -4264.603468 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 339.174 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-42.23976 -39.39586 -38.17995 -38.15526 -37.05052 -34.75558 -34.14572 -33.63469
-31.94398 -30.85171 -29.53246 -28.53802 -26.74702 -25.56042 -23.61527 -22.72887
-22.51102 -21.86870 -20.42591 -19.79729 -19.32930 -18.85982 -18.62616 -17.41282
-16.84526 -16.31752 -15.96774 -15.74615 -15.41694 -15.02866 -14.80027 -14.73008
-14.21598 -13.87124 -13.68504 -13.40086 -13.16838 -13.00096 -12.86807 -12.48886
-12.36225 -12.15913 -12.08540 -11.60199 -11.41151 -11.33916 -11.22844 -10.95500
-10.75532 -10.52487 -10.50887 -10.33935 -10.15638 -10.10254 -9.83148 -9.71307
-9.70399 -9.38626 -9.36841 -8.58271 -8.48914 -6.85704 -5.98504 -3.44147
1.50899 1.77744 2.26199 2.81835 3.23534 3.25480 3.31421 3.34578
3.45436 3.89360 4.32356 4.50464 4.94728 5.03153 5.05751 5.19910
5.24242 5.28581 5.32643 5.36446 5.52908 5.72614 5.75534 5.87729
5.93754 6.01794 6.08777 6.15695 6.27879 6.43200 6.48101 6.54352
6.56562 6.63751 6.73341 6.85788 6.92873 7.01633 7.02767 7.26984
7.32033 7.51812 7.65968 7.91366 7.95349 8.26810 8.54303 9.04242
9.68626 10.14410 11.07649
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.013042 B = 0.003970 C = 0.003348
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2146.352856 B = 7050.981444 C = 8360.368819
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.902 5.902
2 C 0.013 3.987
3 Si 0.892 3.108
4 H -0.284 1.284
5 H -0.291 1.291
6 H -0.285 1.285
7 C -0.252 4.252
8 H 0.061 0.939
9 N -0.584 5.584
10 C 0.181 3.819
11 C -0.143 4.143
12 C -0.107 4.107
13 C -0.101 4.101
14 C -0.136 4.136
15 C 0.174 3.826
16 H 0.046 0.954
17 C 0.131 3.869
18 N -0.679 5.679
19 C 0.496 3.504
20 O -0.551 6.551
21 C 0.081 3.919
22 N -0.492 5.492
23 C 0.421 3.579
24 O -0.437 6.437
25 N -0.301 5.301
26 N -0.302 5.302
27 C 0.414 3.586
28 O -0.434 6.434
29 H 0.254 0.746
30 H 0.025 0.975
31 H 0.072 0.928
32 H 0.043 0.957
33 H 0.049 0.951
34 H 0.040 0.960
35 H 0.073 0.927
36 H 0.046 0.954
37 H 0.041 0.959
38 H 0.049 0.951
39 H 0.063 0.937
40 H 0.052 0.948
41 H 0.069 0.931
42 H 0.414 0.586
43 H 0.121 0.879
44 H 0.133 0.867
45 H 0.417 0.583
46 H 0.408 0.592
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.130 -6.278 -2.557 7.466
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.546 5.546
2 C -0.186 4.186
3 Si 0.723 3.277
4 H -0.210 1.210
5 H -0.217 1.217
6 H -0.211 1.211
7 C -0.382 4.382
8 H 0.079 0.921
9 N -0.306 5.306
10 C 0.056 3.944
11 C -0.182 4.182
12 C -0.144 4.144
13 C -0.139 4.139
14 C -0.177 4.177
15 C 0.065 3.935
16 H 0.064 0.936
17 C 0.006 3.994
18 N -0.328 5.328
19 C 0.279 3.721
20 O -0.430 6.430
21 C -0.046 4.046
22 N -0.211 5.211
23 C 0.111 3.889
24 O -0.238 6.238
25 N -0.146 5.146
26 N -0.146 5.146
27 C 0.104 3.896
28 O -0.233 6.233
29 H 0.064 0.936
30 H 0.043 0.957
31 H 0.090 0.910
32 H 0.062 0.938
33 H 0.068 0.932
34 H 0.059 0.941
35 H 0.092 0.908
36 H 0.065 0.935
37 H 0.060 0.940
38 H 0.067 0.933
39 H 0.082 0.918
40 H 0.070 0.930
41 H 0.088 0.912
42 H 0.250 0.750
43 H 0.139 0.861
44 H 0.151 0.849
45 H 0.276 0.724
46 H 0.265 0.735
Dipole moment (debyes) X Y Z Total
from point charges -1.859 -6.033 -4.249 7.609
hybrid contribution -0.615 0.730 1.997 2.213
sum -2.474 -5.303 -2.252 6.270
Atomic orbital electron populations
1.70007 1.04983 1.25672 1.53963 1.24932 0.95160 0.97942 1.00554
0.86540 0.79111 0.83851 0.78246 1.21006 1.21671 1.21128 1.18976
0.92084 0.84664 1.42449 0.92124 1.43718 1.34286 1.01725 1.50845
1.20992 0.88460 0.95466 0.89454 1.22065 0.96119 1.00447 0.99592
1.20949 0.97058 0.99790 0.96651 1.20290 0.99052 0.97939 0.96611
1.21370 0.99614 0.99767 0.96939 1.20512 0.94102 0.89484 0.89430
0.93649 1.21532 0.92455 0.95072 0.90316 1.45584 1.18872 1.57051
1.11303 1.20303 0.88396 0.80252 0.83157 1.90723 1.22608 1.56052
1.73637 1.21770 0.96586 1.04723 0.81540 1.46597 1.46342 1.15868
1.12248 1.21301 0.94960 0.82491 0.90173 1.84890 1.47231 1.33161
1.58525 1.78322 1.20898 1.09337 1.05993 1.78273 1.15713 1.00953
1.19674 1.21185 0.98552 0.85419 0.84429 1.85001 1.30639 1.18377
1.89281 0.93555 0.95727 0.90951 0.93784 0.93224 0.94141 0.90797
0.93490 0.94026 0.93268 0.91805 0.92989 0.91231 0.74955 0.86118
0.84891 0.72387 0.73456
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -21.56 11.13 55.49 0.62 -20.94 16
2 C 0.01 0.30 4.87 -17.43 -0.08 0.22 16
3 Si 0.89 19.56 29.58 -169.99 -5.03 14.53 16
4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16
6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
7 C -0.25 -5.59 7.60 -15.06 -0.11 -5.71 16
8 H 0.06 1.42 6.76 -52.48 -0.35 1.07 16
9 N -0.58 -11.38 1.77 -164.47 -0.29 -11.67 16
10 C 0.18 3.56 4.66 -2.95 -0.01 3.55 16
11 C -0.14 -2.33 5.71 -27.30 -0.16 -2.49 16
12 C -0.11 -1.68 5.51 -28.02 -0.15 -1.83 16
13 C -0.10 -1.46 5.15 -29.79 -0.15 -1.62 16
14 C -0.14 -2.09 5.06 -28.59 -0.14 -2.24 16
15 C 0.17 2.91 2.19 -67.98 -0.15 2.76 16
16 H 0.05 0.75 8.07 -51.93 -0.42 0.33 16
17 C 0.13 2.22 4.53 -4.04 -0.02 2.20 16
18 N -0.68 -11.13 4.71 -60.29 -0.28 -11.42 16
19 C 0.50 8.14 7.90 -10.99 -0.09 8.06 16
20 O -0.55 -11.05 16.43 5.56 0.09 -10.96 16
21 C 0.08 1.04 6.49 -5.19 -0.03 1.01 16
22 N -0.49 -7.13 2.25 -121.35 -0.27 -7.40 16
23 C 0.42 6.65 9.15 -88.81 -0.81 5.83 16
24 O -0.44 -6.11 13.58 -18.61 -0.25 -6.36 16
25 N -0.30 -5.29 12.72 29.66 0.38 -4.91 16
26 N -0.30 -5.14 12.72 29.65 0.38 -4.77 16
27 C 0.41 6.05 9.15 -88.82 -0.81 5.24 16
28 O -0.43 -4.80 13.58 -18.58 -0.25 -5.05 16
29 H 0.25 6.15 8.31 -40.82 -0.34 5.81 16
30 H 0.02 0.52 8.01 -51.93 -0.42 0.10 16
31 H 0.07 1.65 6.48 -51.93 -0.34 1.32 16
32 H 0.04 0.68 7.32 -51.93 -0.38 0.30 16
33 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16
34 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16
35 H 0.07 1.35 7.48 -51.93 -0.39 0.96 16
36 H 0.05 0.65 7.36 -51.93 -0.38 0.27 16
37 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16
38 H 0.05 0.68 8.11 -51.92 -0.42 0.26 16
39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16
40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16
41 H 0.07 1.34 6.85 -51.93 -0.36 0.98 16
42 H 0.41 6.90 8.07 -40.82 -0.33 6.57 16
43 H 0.12 1.13 8.14 -51.93 -0.42 0.70 16
44 H 0.13 1.67 8.14 -51.93 -0.42 1.25 16
45 H 0.42 4.47 9.06 45.56 0.41 4.88 16
46 H 0.41 1.90 9.06 45.56 0.41 2.32 16
LS Contribution 375.70 15.07 5.66 5.66
Total: -1.00 -30.44 375.70 -7.04 -37.48
By element:
Atomic # 1 Polarization: 15.87 SS G_CDS: -5.05 Total: 10.82 kcal
Atomic # 6 Polarization: 17.72 SS G_CDS: -2.74 Total: 14.99 kcal
Atomic # 7 Polarization: -61.63 SS G_CDS: 0.52 Total: -61.11 kcal
Atomic # 8 Polarization: -21.96 SS G_CDS: -0.41 Total: -22.38 kcal
Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.53 kcal
Total LS contribution 5.66 Total: 5.66 kcal
Total: -30.44 -7.04 -37.48 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001570827415.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.793 kcal
(2) G-P(sol) polarization free energy of solvation -30.438 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.355 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.480 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.313 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds