Wall clock time and date at job start Tue Mar 31 2020 22:47:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86796 * 120.00443 * 2 1
4 4 H 1.48503 * 109.47310 * 239.99636 * 3 2 1
5 5 H 1.48502 * 109.46860 * 359.97438 * 3 2 1
6 6 H 1.48505 * 109.47261 * 119.99517 * 3 2 1
7 7 C 1.38816 * 119.99393 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99505 * 164.88494 * 7 2 1
9 9 N 1.36934 * 120.00192 * 344.88813 * 7 2 1
10 10 C 1.47598 * 118.64423 * 331.39337 * 9 7 2
11 11 C 1.53947 * 112.14408 * 222.13495 * 10 9 7
12 12 C 1.50873 * 110.09648 * 40.56705 * 11 10 9
13 13 C 1.52573 * 109.35832 * 268.11544 * 12 11 10
14 14 C 1.47085 * 114.32493 * 85.01249 * 13 12 11
15 15 C 1.44579 * 118.64237 * 151.40483 * 9 7 2
16 16 H 1.09004 * 109.42131 * 209.29887 * 15 9 7
17 17 C 1.53003 * 109.44916 * 329.22467 * 15 9 7
18 18 N 1.46503 * 109.47365 * 305.13944 * 17 15 9
19 19 C 1.34779 * 120.00113 * 180.02562 * 18 17 15
20 20 O 1.21277 * 119.99568 * 359.97438 * 19 18 17
21 21 C 1.50696 * 119.99768 * 180.27744 * 19 18 17
22 22 N 1.46505 * 109.47045 * 179.72522 * 21 19 18
23 23 C 1.36367 * 125.95665 * 269.68492 * 22 21 19
24 24 O 1.35636 * 125.99217 * 0.03918 * 23 22 21
25 25 N 1.30907 * 108.02363 * 179.88664 * 23 22 21
26 26 N 1.40120 * 107.93537 * 0.37032 * 25 23 22
27 27 C 1.30901 * 107.94061 * 359.76660 * 26 25 23
28 28 O 1.35626 * 125.99096 * 179.97438 * 27 26 25
29 29 H 0.97003 * 119.99670 * 0.02562 * 1 2 3
30 30 H 1.09006 * 108.94688 * 101.44635 * 10 9 7
31 31 H 1.09001 * 108.94995 * 342.82507 * 10 9 7
32 32 H 1.09000 * 109.36574 * 280.37240 * 11 10 9
33 33 H 1.09007 * 109.36558 * 160.75887 * 11 10 9
34 34 H 1.08995 * 109.49280 * 148.14931 * 12 11 10
35 35 H 1.09004 * 109.49248 * 28.07878 * 12 11 10
36 36 H 1.09003 * 108.51118 * 323.75581 * 13 12 11
37 37 H 1.09004 * 108.38904 * 206.17582 * 13 12 11
38 38 H 1.09008 * 109.33129 * 176.93819 * 14 13 12
39 39 H 1.09003 * 109.19232 * 57.37241 * 14 13 12
40 40 H 1.08993 * 109.47227 * 185.13888 * 17 15 9
41 41 H 1.09004 * 109.46807 * 65.13683 * 17 15 9
42 42 H 0.97001 * 119.99862 * 359.97438 * 18 17 15
43 43 H 1.09001 * 109.46956 * 299.71754 * 21 19 18
44 44 H 1.08994 * 109.47787 * 59.71785 * 21 19 18
45 45 H 0.96701 * 113.99991 * 89.99798 * 24 23 22
46 46 H 0.96695 * 114.00207 * 270.03118 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6176 0.0000
4 1 3.1042 1.6962 -1.2125
5 1 1.2853 2.7464 -0.0006
6 1 3.1040 1.6963 1.2126
7 6 2.0102 -1.2023 0.0005
8 1 3.0622 -1.2186 -0.2434
9 7 1.3609 -2.3674 0.3102
10 6 0.1977 -2.3098 1.2169
11 6 0.2037 -3.4582 2.2422
12 6 1.6050 -3.6924 2.7500
13 6 2.2850 -4.7515 1.8876
14 6 2.9134 -4.2259 0.6660
15 6 1.8433 -3.6034 -0.2643
16 1 1.0119 -4.2991 -0.3778
17 6 2.4618 -3.3208 -1.6349
18 7 1.4862 -2.6236 -2.4766
19 6 1.8126 -2.2712 -3.7359
20 8 2.9141 -2.5307 -4.1720
21 6 0.8112 -1.5485 -4.5995
22 7 1.4050 -1.2738 -5.9104
23 6 2.1010 -0.1529 -6.2551
24 8 2.3651 0.9021 -5.4446
25 7 2.4723 -0.2749 -7.5044
26 7 1.9950 -1.5041 -7.9784
27 6 1.3533 -2.0917 -7.0004
28 8 0.7434 -3.3016 -7.0606
29 1 -0.4850 0.8401 -0.0004
30 1 -0.7157 -2.3686 0.6250
31 1 0.2112 -1.3592 1.7501
32 1 -0.1659 -4.3676 1.7685
33 1 -0.4454 -3.1992 3.0788
34 1 1.5646 -4.0362 3.7836
35 1 2.1711 -2.7624 2.6976
36 1 1.5410 -5.4950 1.6017
37 1 3.0513 -5.2430 2.4870
38 1 3.4186 -5.0376 0.1422
39 1 3.6429 -3.4630 0.9380
40 1 2.7428 -4.2618 -2.1077
41 1 3.3473 -2.6971 -1.5123
42 1 0.6051 -2.4164 -2.1279
43 1 -0.0754 -2.1700 -4.7255
44 1 0.5315 -0.6089 -4.1232
45 1 3.1927 0.8213 -4.9509
46 1 -0.1827 -3.2620 -7.3356
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001570827415.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:47:02
Heat of formation + Delta-G solvation = -26.029169 kcal
Electronic energy + Delta-G solvation = -31332.285122 eV
Core-core repulsion = 27066.539378 eV
Total energy + Delta-G solvation = -4265.745744 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 339.174 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-43.38740 -40.75846 -39.57025 -39.17482 -38.08122 -36.08810 -35.35566 -35.20448
-33.30217 -32.45891 -30.70765 -29.78387 -28.18591 -26.97598 -25.18726 -23.87106
-23.81956 -23.02937 -21.74734 -21.10401 -20.78390 -19.86921 -19.80409 -18.69496
-18.08370 -17.68406 -17.25163 -17.23122 -16.52745 -16.35378 -16.17299 -16.05960
-15.77234 -15.19370 -15.07768 -14.70412 -14.42311 -14.35356 -13.94681 -13.77692
-13.50817 -13.40613 -13.38064 -13.09999 -12.87132 -12.79644 -12.69530 -12.57220
-12.38622 -11.99918 -11.77655 -11.64286 -11.54152 -11.39214 -11.30753 -11.19755
-11.02624 -10.67714 -10.55593 -10.33285 -9.88771 -8.52785 -7.77464 -5.21313
0.37751 0.72893 1.09166 1.43968 1.51596 1.52964 1.53827 2.16298
2.27103 2.54679 2.83303 3.37341 3.47336 3.60636 3.71597 4.04916
4.06052 4.09306 4.11798 4.24711 4.28201 4.43488 4.50725 4.61947
4.64652 4.68340 4.82088 5.02019 5.08294 5.14865 5.18136 5.25416
5.27711 5.39330 5.43584 5.55222 5.60022 5.69522 5.76411 5.81613
5.92450 6.14306 6.40200 6.49499 6.62880 6.74673 7.22788 7.29133
8.02322 8.41703 9.25126
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.013042 B = 0.003970 C = 0.003348
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2146.352856 B = 7050.981444 C = 8360.368819
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.914 5.914
2 C -0.018 4.018
3 Si 0.926 3.074
4 H -0.283 1.283
5 H -0.299 1.299
6 H -0.295 1.295
7 C -0.234 4.234
8 H 0.046 0.954
9 N -0.587 5.587
10 C 0.190 3.810
11 C -0.134 4.134
12 C -0.104 4.104
13 C -0.101 4.101
14 C -0.130 4.130
15 C 0.175 3.825
16 H 0.061 0.939
17 C 0.136 3.864
18 N -0.676 5.676
19 C 0.495 3.505
20 O -0.590 6.590
21 C 0.088 3.912
22 N -0.491 5.491
23 C 0.419 3.581
24 O -0.440 6.440
25 N -0.332 5.332
26 N -0.336 5.336
27 C 0.429 3.571
28 O -0.432 6.432
29 H 0.247 0.753
30 H 0.009 0.991
31 H 0.035 0.965
32 H 0.061 0.939
33 H 0.058 0.942
34 H 0.060 0.940
35 H 0.041 0.959
36 H 0.062 0.938
37 H 0.058 0.942
38 H 0.071 0.929
39 H 0.040 0.960
40 H 0.064 0.936
41 H 0.042 0.958
42 H 0.414 0.586
43 H 0.163 0.837
44 H 0.139 0.861
45 H 0.429 0.571
46 H 0.437 0.563
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.083 -8.407 -2.066 9.572
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.560 5.560
2 C -0.215 4.215
3 Si 0.757 3.243
4 H -0.210 1.210
5 H -0.225 1.225
6 H -0.223 1.223
7 C -0.365 4.365
8 H 0.064 0.936
9 N -0.309 5.309
10 C 0.065 3.935
11 C -0.172 4.172
12 C -0.142 4.142
13 C -0.138 4.138
14 C -0.170 4.170
15 C 0.067 3.933
16 H 0.079 0.921
17 C 0.011 3.989
18 N -0.325 5.325
19 C 0.280 3.720
20 O -0.472 6.472
21 C -0.038 4.038
22 N -0.210 5.210
23 C 0.108 3.892
24 O -0.242 6.242
25 N -0.176 5.176
26 N -0.180 5.180
27 C 0.118 3.882
28 O -0.236 6.236
29 H 0.056 0.944
30 H 0.027 0.973
31 H 0.054 0.946
32 H 0.080 0.920
33 H 0.077 0.923
34 H 0.079 0.921
35 H 0.060 0.940
36 H 0.081 0.919
37 H 0.077 0.923
38 H 0.089 0.911
39 H 0.059 0.941
40 H 0.082 0.918
41 H 0.060 0.940
42 H 0.251 0.749
43 H 0.181 0.819
44 H 0.157 0.843
45 H 0.290 0.710
46 H 0.300 0.700
Dipole moment (debyes) X Y Z Total
from point charges -2.832 -8.186 -3.753 9.440
hybrid contribution -0.300 1.313 1.899 2.328
sum -3.132 -6.873 -1.854 7.777
Atomic orbital electron populations
1.70076 1.05241 1.25116 1.55517 1.25180 0.95507 0.99020 1.01809
0.86017 0.78101 0.82566 0.77587 1.20958 1.22542 1.22283 1.18886
0.91377 0.85669 1.40554 0.93626 1.43749 1.33974 1.01952 1.51240
1.20772 0.87734 0.95320 0.89632 1.21950 0.96946 0.99472 0.98880
1.20909 0.96164 0.98841 0.98253 1.20274 0.99826 0.97702 0.96006
1.21299 0.98674 0.99688 0.97360 1.20653 0.94890 0.88397 0.89388
0.92146 1.21444 0.91649 0.95064 0.90769 1.45589 1.18634 1.56887
1.11390 1.20846 0.88419 0.79584 0.83135 1.90710 1.24448 1.57654
1.74344 1.21895 0.96498 1.05260 0.80192 1.46642 1.46221 1.15472
1.12679 1.21379 0.94723 0.83002 0.90126 1.84864 1.48106 1.32829
1.58423 1.78220 1.22085 1.10213 1.07109 1.78187 1.17426 1.01410
1.21006 1.21264 0.97450 0.85624 0.83839 1.84975 1.32933 1.16355
1.89292 0.94367 0.97308 0.94603 0.92047 0.92283 0.92126 0.94016
0.91894 0.92311 0.91090 0.94110 0.91758 0.93977 0.74898 0.81913
0.84308 0.70977 0.70025
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -43.94 11.13 21.65 0.24 -43.70 16
2 C -0.02 -0.85 4.87 84.86 0.41 -0.44 16
3 Si 0.93 40.61 29.58 68.60 2.03 42.64 16
4 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16
5 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16
6 H -0.30 -13.36 7.11 99.48 0.71 -12.65 16
7 C -0.23 -10.43 7.60 84.03 0.64 -9.79 16
8 H 0.05 2.18 6.76 -2.91 -0.02 2.16 16
9 N -0.59 -22.48 1.77 -674.25 -1.19 -23.67 16
10 C 0.19 7.36 4.66 86.49 0.40 7.77 16
11 C -0.13 -4.04 5.71 30.22 0.17 -3.86 16
12 C -0.10 -3.02 5.51 29.76 0.16 -2.85 16
13 C -0.10 -2.57 5.15 28.61 0.15 -2.42 16
14 C -0.13 -3.70 5.06 29.39 0.15 -3.55 16
15 C 0.17 5.53 2.19 45.99 0.10 5.63 16
16 H 0.06 1.79 8.07 -2.38 -0.02 1.77 16
17 C 0.14 4.44 4.53 86.38 0.39 4.83 16
18 N -0.68 -21.28 4.71 -463.06 -2.18 -23.47 16
19 C 0.50 15.59 7.90 87.66 0.69 16.28 16
20 O -0.59 -23.25 16.43 -3.02 -0.05 -23.30 16
21 C 0.09 2.06 6.49 85.63 0.56 2.62 16
22 N -0.49 -13.52 2.25 -759.28 -1.71 -15.23 16
23 C 0.42 13.03 9.15 179.72 1.65 14.67 16
24 O -0.44 -12.12 13.58 -89.49 -1.21 -13.33 16
25 N -0.33 -11.68 12.72 -173.65 -2.21 -13.89 16
26 N -0.34 -11.31 12.72 -173.67 -2.21 -13.51 16
27 C 0.43 11.86 9.15 179.72 1.65 13.51 16
28 O -0.43 -8.40 13.58 -89.39 -1.21 -9.61 16
29 H 0.25 12.04 8.31 -92.71 -0.77 11.27 16
30 H 0.01 0.37 8.01 -2.38 -0.02 0.35 16
31 H 0.04 1.64 6.48 -2.39 -0.02 1.63 16
32 H 0.06 1.67 7.32 -2.39 -0.02 1.65 16
33 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16
34 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16
35 H 0.04 1.48 7.48 -2.38 -0.02 1.46 16
36 H 0.06 1.45 7.36 -2.39 -0.02 1.43 16
37 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16
38 H 0.07 1.74 8.11 -2.38 -0.02 1.72 16
39 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16
40 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16
41 H 0.04 1.62 6.85 -2.38 -0.02 1.60 16
42 H 0.41 13.15 8.07 -92.71 -0.75 12.40 16
43 H 0.16 2.43 8.14 -2.39 -0.02 2.41 16
44 H 0.14 3.21 8.14 -2.39 -0.02 3.19 16
45 H 0.43 9.16 9.06 -74.06 -0.67 8.49 16
46 H 0.44 2.60 9.06 -74.06 -0.67 1.93 16
Total: -1.00 -66.82 375.70 -3.63 -70.45
By element:
Atomic # 1 Polarization: 25.28 SS G_CDS: -1.04 Total: 24.24 kcal
Atomic # 6 Polarization: 35.28 SS G_CDS: 7.12 Total: 42.39 kcal
Atomic # 7 Polarization: -124.21 SS G_CDS: -9.26 Total: -133.47 kcal
Atomic # 8 Polarization: -43.77 SS G_CDS: -2.48 Total: -46.24 kcal
Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal
Total: -66.82 -3.63 -70.45 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001570827415.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.418 kcal
(2) G-P(sol) polarization free energy of solvation -66.820 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.402 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.627 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.447 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.029 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds