Wall clock time and date at job start Tue Mar 31 2020 22:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99966 * 2 1 4 4 H 1.48503 * 109.46902 * 269.99719 * 3 2 1 5 5 H 1.48495 * 109.47082 * 30.00124 * 3 2 1 6 6 H 1.48500 * 109.46791 * 150.00117 * 3 2 1 7 7 C 1.38811 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00440 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99849 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00131 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47403 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47111 * 180.02562 * 11 10 9 13 13 N 1.46502 * 109.46675 * 179.97438 * 12 11 10 14 14 C 1.46497 * 119.99890 * 278.87632 * 13 12 11 15 15 C 1.50694 * 109.47365 * 273.08374 * 14 13 12 16 16 C 1.38238 * 120.00116 * 269.46966 * 15 14 13 17 17 C 1.38235 * 119.99968 * 179.76729 * 16 15 14 18 18 C 1.38235 * 120.00216 * 0.50500 * 17 16 15 19 19 C 1.38238 * 119.99582 * 359.74621 * 18 17 16 20 20 C 1.38232 * 120.00169 * 0.02562 * 19 18 17 21 21 C 1.34771 * 120.00104 * 98.88459 * 13 12 11 22 22 O 1.21549 * 120.00351 * 186.33613 * 21 13 12 23 23 C 1.47839 * 120.00052 * 6.32991 * 21 13 12 24 24 C 1.40024 * 120.55994 * 150.46131 * 23 21 13 25 25 C 1.38363 * 118.28623 * 180.26366 * 24 23 21 26 26 C 1.38351 * 119.30430 * 359.46330 * 25 24 23 27 27 N 1.31920 * 121.07909 * 0.27991 * 26 25 24 28 28 C 1.31694 * 121.88167 * 359.97438 * 27 26 25 29 29 H 0.96996 * 120.00066 * 0.02562 * 1 2 3 30 30 H 0.97006 * 120.00005 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.47234 * 59.99936 * 10 9 7 32 32 H 1.09004 * 109.47091 * 300.00047 * 10 9 7 33 33 H 1.08999 * 109.46686 * 59.99856 * 11 10 9 34 34 H 1.08996 * 109.46542 * 300.00102 * 11 10 9 35 35 H 1.08991 * 109.47026 * 59.99921 * 12 11 10 36 36 H 1.09004 * 109.47223 * 299.99715 * 12 11 10 37 37 H 1.09009 * 109.47333 * 33.08573 * 14 13 12 38 38 H 1.09001 * 109.47182 * 153.08316 * 14 13 12 39 39 H 1.07998 * 119.99425 * 359.97438 * 16 15 14 40 40 H 1.08003 * 120.00061 * 180.22573 * 17 16 15 41 41 H 1.07993 * 120.00322 * 179.72191 * 18 17 16 42 42 H 1.08007 * 119.99744 * 179.97438 * 19 18 17 43 43 H 1.07998 * 119.99882 * 179.97438 * 20 19 18 44 44 H 1.07995 * 120.86018 * 0.02926 * 24 23 21 45 45 H 1.08004 * 120.34244 * 179.73740 * 25 24 23 46 46 H 1.07994 * 119.45811 * 180.25213 * 26 25 24 47 47 H 1.08002 * 119.71995 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 -0.0001 12 6 1.8288 -6.1448 0.0005 13 7 0.8767 -7.2582 0.0005 14 6 0.2515 -7.6874 1.2540 15 6 1.1409 -8.6912 1.9411 16 6 0.9874 -10.0408 1.6840 17 6 1.8064 -10.9613 2.3107 18 6 2.7721 -10.5331 3.2024 19 6 2.9221 -9.1839 3.4633 20 6 2.1062 -8.2630 2.8331 21 6 0.5762 -7.8879 -1.1525 22 8 -0.2970 -8.7332 -1.1737 23 6 1.3084 -7.5504 -2.3917 24 6 1.4938 -8.5112 -3.3932 25 6 2.1909 -8.1460 -4.5312 26 6 2.6682 -6.8526 -4.6471 27 7 2.4738 -5.9666 -3.6892 28 6 1.8211 -6.2673 -2.5856 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 2.6846 -3.7145 0.8905 32 1 2.6847 -3.7145 -0.8895 33 1 0.4374 -4.7617 -0.8903 34 1 0.4368 -4.7621 0.8896 35 1 2.4547 -6.2024 0.8909 36 1 2.4561 -6.2026 -0.8890 37 1 0.1091 -6.8235 1.9034 38 1 -0.7148 -8.1443 1.0402 39 1 0.2297 -10.3756 0.9911 40 1 1.6889 -12.0154 2.1071 41 1 3.4090 -11.2525 3.6953 42 1 3.6763 -8.8493 4.1603 43 1 2.2232 -7.2090 3.0373 44 1 1.1060 -9.5126 -3.2788 45 1 2.3569 -8.8619 -5.3227 46 1 3.2091 -6.5637 -5.5360 47 1 1.6817 -5.5144 -1.8240 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571336719.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:39 Heat of formation + Delta-G solvation = 68.478666 kcal Electronic energy + Delta-G solvation = -28785.777439 eV Core-core repulsion = 24934.979125 eV Total energy + Delta-G solvation = -3850.798314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.16449 -39.67258 -38.75724 -36.84666 -34.86440 -33.14079 -32.66437 -31.79979 -31.06349 -31.03319 -29.61689 -26.83375 -25.59293 -24.04320 -23.75579 -22.96287 -22.56444 -21.67169 -21.08992 -19.76830 -17.84371 -17.45211 -17.17253 -16.92995 -16.70511 -15.79422 -15.58010 -15.36430 -15.11000 -14.93837 -14.67721 -14.10174 -13.95531 -13.69486 -13.57894 -13.35503 -13.20067 -13.19961 -13.12678 -12.70732 -12.51965 -12.18848 -12.06783 -11.69422 -11.38810 -11.13208 -10.98738 -10.91923 -10.77286 -10.66142 -10.30845 -10.09433 -10.07713 -9.73717 -9.52437 -9.25431 -9.08754 -8.99632 -8.88268 -8.81188 -6.93975 -5.76471 -3.05789 0.53478 1.03211 1.08810 1.23602 2.63405 2.80902 3.44641 3.49579 3.51168 3.63304 3.68239 4.13508 4.39450 4.57533 4.60911 4.61971 4.65270 4.68814 4.81104 4.83083 4.85374 4.95271 5.07041 5.12343 5.22210 5.31316 5.41089 5.44853 5.50190 5.53683 5.56954 5.74993 5.76483 5.80569 5.81521 5.88374 5.89645 6.15600 6.26018 6.27982 6.28972 6.33117 6.39894 6.43690 6.72230 6.75128 6.81974 7.16650 7.70389 7.75212 7.95382 8.41857 9.53285 10.09578 10.43857 11.46349 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008869 B = 0.003246 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3156.478539 B = 8624.464168 C =10866.003178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.732 5.732 10 C 0.153 3.847 11 C -0.154 4.154 12 C 0.078 3.922 13 N -0.595 5.595 14 C 0.151 3.849 15 C -0.105 4.105 16 C -0.099 4.099 17 C -0.125 4.125 18 C -0.119 4.119 19 C -0.123 4.123 20 C -0.104 4.104 21 C 0.569 3.431 22 O -0.536 6.536 23 C -0.190 4.190 24 C -0.022 4.022 25 C -0.185 4.185 26 C 0.119 3.881 27 N -0.479 5.479 28 C 0.108 3.892 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.022 0.978 32 H 0.024 0.976 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.125 0.875 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.160 0.840 47 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.242 -23.979 -0.296 24.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.376 5.376 10 C 0.025 3.975 11 C -0.192 4.192 12 C -0.045 4.045 13 N -0.325 5.325 14 C 0.029 3.971 15 C -0.106 4.106 16 C -0.117 4.117 17 C -0.143 4.143 18 C -0.137 4.137 19 C -0.141 4.141 20 C -0.123 4.123 21 C 0.357 3.643 22 O -0.414 6.414 23 C -0.195 4.195 24 C -0.048 4.048 25 C -0.205 4.205 26 C -0.038 4.038 27 N -0.187 5.187 28 C -0.048 4.048 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.040 0.960 32 H 0.041 0.959 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.160 0.840 45 H 0.159 0.841 46 H 0.177 0.823 47 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 5.225 -23.445 -0.398 24.024 hybrid contribution -0.097 0.091 0.086 0.158 sum 5.128 -23.355 -0.312 23.913 Atomic orbital electron populations 1.69657 1.05131 1.25688 1.57691 1.24745 0.95518 0.97725 1.02931 0.86188 0.78641 0.83797 0.77562 1.21666 1.21803 1.20725 1.19217 0.91055 0.84054 1.42780 0.91089 1.42311 1.05856 0.99864 1.89572 1.20591 0.93208 0.85342 0.98341 1.22274 0.99993 0.93580 1.03403 1.22496 0.91818 0.85191 1.04997 1.47804 1.44697 1.33389 1.06643 1.20417 0.95541 0.96926 0.84178 1.20236 0.97993 0.94612 0.97738 1.21192 0.99156 0.92610 0.98792 1.21156 0.96197 0.99527 0.97454 1.21175 0.98330 0.95932 0.98284 1.21159 0.99581 0.93275 1.00130 1.21158 0.94952 0.99902 0.96242 1.18099 0.82353 0.80895 0.82922 1.90745 1.31405 1.33606 1.85636 1.20967 1.04443 0.97065 0.97029 1.21630 0.92673 0.99391 0.91118 1.22136 1.00829 0.98482 0.99012 1.23116 0.94359 0.89279 0.97074 1.67919 1.14143 1.35554 1.01072 1.24549 0.90152 0.95213 0.94933 0.93499 0.78242 0.95977 0.95860 0.91089 0.90484 0.89736 0.87922 0.88931 0.88435 0.85683 0.86226 0.86276 0.86004 0.85718 0.84033 0.84150 0.82253 0.78810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.17 13.06 55.49 0.72 -27.44 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.12 5.60 -59.91 -0.34 -18.45 16 10 C 0.15 2.87 6.18 -4.04 -0.03 2.84 16 11 C -0.15 -2.25 4.68 -26.73 -0.12 -2.37 16 12 C 0.08 0.92 4.88 -4.04 -0.02 0.90 16 13 N -0.59 -7.24 2.46 -176.18 -0.43 -7.67 16 14 C 0.15 1.68 5.62 -5.20 -0.03 1.65 16 15 C -0.10 -1.13 5.46 -104.63 -0.57 -1.70 16 16 C -0.10 -1.07 9.70 -39.58 -0.38 -1.45 16 17 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 18 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 19 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 20 C -0.10 -1.04 9.50 -39.58 -0.38 -1.42 16 21 C 0.57 7.85 7.48 -12.33 -0.09 7.76 16 22 O -0.54 -8.47 16.28 5.32 0.09 -8.38 16 23 C -0.19 -2.47 5.59 -104.82 -0.59 -3.05 16 24 C -0.02 -0.24 9.73 -38.87 -0.38 -0.62 16 25 C -0.18 -1.69 10.10 -39.49 -0.40 -2.09 16 26 C 0.12 1.26 11.17 -17.47 -0.20 1.06 16 27 N -0.48 -6.68 10.35 -12.93 -0.13 -6.81 16 28 C 0.11 1.49 8.68 -17.13 -0.15 1.34 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.38 10.05 7.67 -40.82 -0.31 9.73 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.02 0.44 7.86 -51.93 -0.41 0.04 16 33 H 0.07 1.11 7.09 -51.93 -0.37 0.74 16 34 H 0.08 1.12 7.84 -51.93 -0.41 0.72 16 35 H 0.08 0.90 7.86 -51.93 -0.41 0.49 16 36 H 0.10 1.24 4.00 -51.98 -0.21 1.03 16 37 H 0.09 0.92 7.74 -51.92 -0.40 0.52 16 38 H 0.10 1.14 7.20 -51.93 -0.37 0.77 16 39 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 41 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 43 H 0.12 1.12 7.99 -52.49 -0.42 0.70 16 44 H 0.14 1.38 7.98 -52.49 -0.42 0.96 16 45 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 46 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 47 H 0.20 2.74 2.29 -52.49 -0.12 2.62 16 LS Contribution 391.17 15.07 5.89 5.89 Total: -1.00 -33.69 391.17 -10.34 -44.03 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -6.35 Total: 10.53 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -4.77 Total: -9.02 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: -0.18 Total: -60.38 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.09 Total: -8.38 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.69 -10.34 -44.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571336719.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.509 kcal (2) G-P(sol) polarization free energy of solvation -33.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds