Wall clock time and date at job start Tue Mar 31 2020 22:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99966 * 2 1 4 4 H 1.48503 * 109.46902 * 269.99719 * 3 2 1 5 5 H 1.48495 * 109.47082 * 30.00124 * 3 2 1 6 6 H 1.48500 * 109.46791 * 150.00117 * 3 2 1 7 7 C 1.38811 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00440 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99849 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00131 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47403 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47111 * 180.02562 * 11 10 9 13 13 N 1.46502 * 109.46675 * 179.97438 * 12 11 10 14 14 C 1.46497 * 119.99890 * 278.87632 * 13 12 11 15 15 C 1.50694 * 109.47365 * 273.08374 * 14 13 12 16 16 C 1.38238 * 120.00116 * 269.46966 * 15 14 13 17 17 C 1.38235 * 119.99968 * 179.76729 * 16 15 14 18 18 C 1.38235 * 120.00216 * 0.50500 * 17 16 15 19 19 C 1.38238 * 119.99582 * 359.74621 * 18 17 16 20 20 C 1.38232 * 120.00169 * 0.02562 * 19 18 17 21 21 C 1.34771 * 120.00104 * 98.88459 * 13 12 11 22 22 O 1.21549 * 120.00351 * 186.33613 * 21 13 12 23 23 C 1.47839 * 120.00052 * 6.32991 * 21 13 12 24 24 C 1.40024 * 120.55994 * 150.46131 * 23 21 13 25 25 C 1.38363 * 118.28623 * 180.26366 * 24 23 21 26 26 C 1.38351 * 119.30430 * 359.46330 * 25 24 23 27 27 N 1.31920 * 121.07909 * 0.27991 * 26 25 24 28 28 C 1.31694 * 121.88167 * 359.97438 * 27 26 25 29 29 H 0.96996 * 120.00066 * 0.02562 * 1 2 3 30 30 H 0.97006 * 120.00005 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.47234 * 59.99936 * 10 9 7 32 32 H 1.09004 * 109.47091 * 300.00047 * 10 9 7 33 33 H 1.08999 * 109.46686 * 59.99856 * 11 10 9 34 34 H 1.08996 * 109.46542 * 300.00102 * 11 10 9 35 35 H 1.08991 * 109.47026 * 59.99921 * 12 11 10 36 36 H 1.09004 * 109.47223 * 299.99715 * 12 11 10 37 37 H 1.09009 * 109.47333 * 33.08573 * 14 13 12 38 38 H 1.09001 * 109.47182 * 153.08316 * 14 13 12 39 39 H 1.07998 * 119.99425 * 359.97438 * 16 15 14 40 40 H 1.08003 * 120.00061 * 180.22573 * 17 16 15 41 41 H 1.07993 * 120.00322 * 179.72191 * 18 17 16 42 42 H 1.08007 * 119.99744 * 179.97438 * 19 18 17 43 43 H 1.07998 * 119.99882 * 179.97438 * 20 19 18 44 44 H 1.07995 * 120.86018 * 0.02926 * 24 23 21 45 45 H 1.08004 * 120.34244 * 179.73740 * 25 24 23 46 46 H 1.07994 * 119.45811 * 180.25213 * 26 25 24 47 47 H 1.08002 * 119.71995 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 -0.0001 12 6 1.8288 -6.1448 0.0005 13 7 0.8767 -7.2582 0.0005 14 6 0.2515 -7.6874 1.2540 15 6 1.1409 -8.6912 1.9411 16 6 0.9874 -10.0408 1.6840 17 6 1.8064 -10.9613 2.3107 18 6 2.7721 -10.5331 3.2024 19 6 2.9221 -9.1839 3.4633 20 6 2.1062 -8.2630 2.8331 21 6 0.5762 -7.8879 -1.1525 22 8 -0.2970 -8.7332 -1.1737 23 6 1.3084 -7.5504 -2.3917 24 6 1.4938 -8.5112 -3.3932 25 6 2.1909 -8.1460 -4.5312 26 6 2.6682 -6.8526 -4.6471 27 7 2.4738 -5.9666 -3.6892 28 6 1.8211 -6.2673 -2.5856 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 2.6846 -3.7145 0.8905 32 1 2.6847 -3.7145 -0.8895 33 1 0.4374 -4.7617 -0.8903 34 1 0.4368 -4.7621 0.8896 35 1 2.4547 -6.2024 0.8909 36 1 2.4561 -6.2026 -0.8890 37 1 0.1091 -6.8235 1.9034 38 1 -0.7148 -8.1443 1.0402 39 1 0.2297 -10.3756 0.9911 40 1 1.6889 -12.0154 2.1071 41 1 3.4090 -11.2525 3.6953 42 1 3.6763 -8.8493 4.1603 43 1 2.2232 -7.2090 3.0373 44 1 1.1060 -9.5126 -3.2788 45 1 2.3569 -8.8619 -5.3227 46 1 3.2091 -6.5637 -5.5360 47 1 1.6817 -5.5144 -1.8240 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571336719.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:38 Heat of formation + Delta-G solvation = 49.078083 kcal Electronic energy + Delta-G solvation = -28786.618711 eV Core-core repulsion = 24934.979125 eV Total energy + Delta-G solvation = -3851.639586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.13378 -40.51213 -39.63350 -38.06132 -36.46107 -34.36204 -33.64375 -33.20571 -31.92088 -31.79397 -31.19711 -27.76154 -27.09994 -25.16314 -24.66996 -24.41067 -23.41801 -22.59701 -22.40744 -20.73562 -19.13910 -18.81131 -18.39474 -17.84195 -17.59870 -16.71966 -16.64029 -16.48322 -16.28437 -15.93266 -15.83929 -15.37508 -15.27186 -14.85478 -14.81917 -14.56001 -14.30557 -14.14251 -14.07398 -13.63358 -13.53332 -13.47141 -12.96256 -12.86155 -12.84097 -12.70050 -12.31133 -12.14538 -12.03178 -11.97694 -11.86952 -11.78167 -11.32120 -11.00530 -10.91871 -10.46296 -10.14363 -9.90271 -9.82701 -9.70493 -8.98312 -7.93132 -5.22011 -0.37293 0.16611 0.32794 0.49283 1.49253 1.51176 1.59281 1.61755 1.84901 2.58137 2.73051 2.92343 3.18877 3.41231 3.48246 3.70743 3.74089 3.81152 3.88132 3.88900 3.93061 4.01202 4.14760 4.23497 4.27989 4.29574 4.43644 4.47292 4.48097 4.55985 4.61250 4.64405 4.70901 4.75259 4.85353 4.94840 5.04170 5.08086 5.15439 5.20231 5.32220 5.36444 5.52622 5.55856 5.57324 5.61133 5.66201 6.09929 6.14915 6.29071 6.84335 6.92740 7.35481 8.11008 8.32944 9.30540 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008869 B = 0.003246 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3156.478539 B = 8624.464168 C =10866.003178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.972 3.028 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.243 4.243 8 H 0.078 0.922 9 N -0.747 5.747 10 C 0.153 3.847 11 C -0.137 4.137 12 C 0.090 3.910 13 N -0.589 5.589 14 C 0.150 3.850 15 C -0.115 4.115 16 C -0.115 4.115 17 C -0.131 4.131 18 C -0.120 4.120 19 C -0.128 4.128 20 C -0.113 4.113 21 C 0.565 3.435 22 O -0.563 6.563 23 C -0.204 4.204 24 C -0.029 4.029 25 C -0.166 4.166 26 C 0.113 3.887 27 N -0.513 5.513 28 C 0.095 3.905 29 H 0.250 0.750 30 H 0.373 0.627 31 H 0.034 0.966 32 H 0.025 0.975 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.137 0.863 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.134 0.866 44 H 0.152 0.848 45 H 0.182 0.818 46 H 0.191 0.809 47 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.445 -25.321 -0.470 26.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.801 3.199 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.191 1.191 7 C -0.374 4.374 8 H 0.096 0.904 9 N -0.389 5.389 10 C 0.027 3.973 11 C -0.175 4.175 12 C -0.033 4.033 13 N -0.319 5.319 14 C 0.029 3.971 15 C -0.116 4.116 16 C -0.134 4.134 17 C -0.148 4.148 18 C -0.138 4.138 19 C -0.145 4.145 20 C -0.131 4.131 21 C 0.354 3.646 22 O -0.443 6.443 23 C -0.209 4.209 24 C -0.055 4.055 25 C -0.185 4.185 26 C -0.043 4.043 27 N -0.221 5.221 28 C -0.061 4.061 29 H 0.059 0.941 30 H 0.205 0.795 31 H 0.052 0.948 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.104 0.896 39 H 0.131 0.869 40 H 0.154 0.846 41 H 0.162 0.838 42 H 0.160 0.840 43 H 0.152 0.848 44 H 0.170 0.830 45 H 0.199 0.801 46 H 0.208 0.792 47 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 7.473 -24.817 -0.556 25.923 hybrid contribution -0.734 0.388 0.087 0.834 sum 6.739 -24.429 -0.468 25.346 Atomic orbital electron populations 1.69816 1.06660 1.26019 1.59673 1.25567 0.96367 1.01142 1.03800 0.85157 0.77835 0.79515 0.77382 1.21582 1.22317 1.19124 1.19648 0.91604 0.85250 1.40928 0.90365 1.42553 1.05623 1.01263 1.89494 1.20729 0.93763 0.84268 0.98575 1.22059 0.99069 0.93619 1.02773 1.22343 0.91347 0.83555 1.06038 1.47808 1.44412 1.32913 1.06742 1.20473 0.95216 0.97521 0.83896 1.20196 0.98521 0.94437 0.98418 1.21222 0.99675 0.93121 0.99377 1.21403 0.95951 1.00228 0.97263 1.21506 0.98118 0.96451 0.97757 1.21471 0.99633 0.93368 1.00069 1.21320 0.94913 1.00699 0.96188 1.18338 0.82073 0.80597 0.83555 1.90721 1.32585 1.34928 1.86094 1.20974 1.05087 0.97457 0.97352 1.21915 0.92833 0.99524 0.91274 1.22533 0.98489 0.98551 0.98916 1.23705 0.94020 0.89484 0.97109 1.67882 1.15120 1.37249 1.01895 1.24334 0.91275 0.95276 0.95264 0.94087 0.79549 0.94762 0.95738 0.92432 0.90455 0.87890 0.87681 0.87884 0.89605 0.86885 0.84556 0.83834 0.83981 0.84842 0.82999 0.80098 0.79207 0.79994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.71 13.06 21.65 0.28 -59.43 16 2 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 3 Si 0.97 46.09 29.55 68.60 2.03 48.12 16 4 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 7 C -0.24 -13.44 9.99 84.03 0.84 -12.60 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.75 -37.35 5.60 -343.45 -1.92 -39.27 16 10 C 0.15 5.69 6.18 86.38 0.53 6.23 16 11 C -0.14 -4.02 4.68 30.60 0.14 -3.87 16 12 C 0.09 2.10 4.88 86.38 0.42 2.52 16 13 N -0.59 -14.46 2.46 -829.59 -2.04 -16.51 16 14 C 0.15 3.38 5.62 85.63 0.48 3.86 16 15 C -0.11 -2.44 5.46 -19.87 -0.11 -2.55 16 16 C -0.12 -2.49 9.70 22.27 0.22 -2.28 16 17 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 18 C -0.12 -1.88 10.05 22.27 0.22 -1.66 16 19 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 20 C -0.11 -2.11 9.50 22.27 0.21 -1.90 16 21 C 0.57 15.90 7.48 86.79 0.65 16.54 16 22 O -0.56 -18.32 16.28 -3.87 -0.06 -18.39 16 23 C -0.20 -5.27 5.59 -19.99 -0.11 -5.38 16 24 C -0.03 -0.60 9.73 22.73 0.22 -0.38 16 25 C -0.17 -2.58 10.10 22.33 0.23 -2.36 16 26 C 0.11 2.16 11.17 84.71 0.95 3.11 16 27 N -0.51 -14.00 10.35 -194.83 -2.02 -16.02 16 28 C 0.09 2.62 8.68 85.02 0.74 3.35 16 29 H 0.25 14.96 8.31 -92.71 -0.77 14.18 16 30 H 0.37 20.02 7.67 -92.70 -0.71 19.31 16 31 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.02 0.92 7.86 -2.38 -0.02 0.90 16 33 H 0.06 1.86 7.09 -2.39 -0.02 1.85 16 34 H 0.08 2.26 7.84 -2.39 -0.02 2.24 16 35 H 0.10 2.04 7.86 -2.39 -0.02 2.02 16 36 H 0.11 2.52 4.00 -2.43 -0.01 2.51 16 37 H 0.10 2.04 7.74 -2.38 -0.02 2.02 16 38 H 0.09 2.12 7.20 -2.39 -0.02 2.10 16 39 H 0.11 2.64 8.06 -2.91 -0.02 2.62 16 40 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 41 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 42 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 43 H 0.13 2.18 7.99 -2.91 -0.02 2.15 16 44 H 0.15 2.77 7.98 -2.91 -0.02 2.74 16 45 H 0.18 1.31 8.06 -2.91 -0.02 1.29 16 46 H 0.19 2.27 8.06 -2.91 -0.02 2.25 16 47 H 0.18 5.27 2.29 -2.91 -0.01 5.27 16 Total: -1.00 -73.50 391.17 3.09 -70.41 By element: Atomic # 1 Polarization: 36.06 SS G_CDS: 0.28 Total: 36.34 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 6.54 Total: -5.26 kcal Atomic # 7 Polarization: -125.52 SS G_CDS: -5.70 Total: -131.22 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.06 Total: -18.39 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -73.50 3.09 -70.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571336719.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.485 kcal (2) G-P(sol) polarization free energy of solvation -73.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds