Wall clock time and date at job start Tue Mar 31 2020 22:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00041 * 2 1 4 4 H 1.48500 * 109.46856 * 239.99931 * 3 2 1 5 5 H 1.48500 * 109.47361 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47367 * 120.00032 * 3 2 1 7 7 C 1.38814 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00255 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99874 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99826 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.47216 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47032 * 300.00076 * 10 9 7 13 13 C 1.52998 * 109.47450 * 294.99664 * 12 10 9 14 14 N 1.46494 * 109.47460 * 179.97438 * 13 12 10 15 15 C 1.34779 * 120.00213 * 180.02562 * 14 13 12 16 16 O 1.21551 * 119.99493 * 359.97438 * 15 14 13 17 17 C 1.47837 * 120.00264 * 180.02562 * 15 14 13 18 18 C 1.40024 * 120.56021 * 179.97438 * 17 15 14 19 19 C 1.38361 * 118.28577 * 179.97438 * 18 17 15 20 20 C 1.38351 * 119.30683 * 0.28083 * 19 18 17 21 21 N 1.31932 * 121.07786 * 359.43803 * 20 19 18 22 22 C 1.31700 * 121.87841 * 0.55406 * 21 20 19 23 23 C 1.53000 * 109.46951 * 60.00042 * 10 9 7 24 24 C 1.50703 * 109.47160 * 65.00290 * 23 10 9 25 25 C 1.38239 * 119.99431 * 269.72591 * 24 23 10 26 26 C 1.38233 * 119.99516 * 179.76719 * 25 24 23 27 27 C 1.38241 * 119.99924 * 0.50495 * 26 25 24 28 28 C 1.38226 * 120.00009 * 359.74715 * 27 26 25 29 29 C 1.38231 * 120.00278 * 0.02562 * 28 27 26 30 30 H 0.96995 * 120.00367 * 0.02562 * 1 2 3 31 31 H 0.96993 * 120.00558 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.47288 * 174.99730 * 12 10 9 33 33 H 1.08998 * 109.47224 * 55.00475 * 12 10 9 34 34 H 1.09012 * 109.46666 * 60.00063 * 13 12 10 35 35 H 1.08996 * 109.47067 * 300.00715 * 13 12 10 36 36 H 0.97002 * 120.00233 * 0.02562 * 14 13 12 37 37 H 1.07990 * 120.85356 * 359.95512 * 18 17 15 38 38 H 1.08002 * 120.34279 * 179.97438 * 19 18 17 39 39 H 1.07994 * 119.46267 * 179.70338 * 20 19 18 40 40 H 1.07994 * 119.71404 * 179.72350 * 22 21 20 41 41 H 1.09006 * 109.46918 * 185.00070 * 23 10 9 42 42 H 1.09001 * 109.47053 * 304.99855 * 23 10 9 43 43 H 1.07994 * 120.00215 * 359.97438 * 25 24 23 44 44 H 1.08000 * 120.00207 * 180.22564 * 26 25 24 45 45 H 1.08007 * 119.99588 * 179.72465 * 27 26 25 46 46 H 1.07997 * 120.00192 * 179.97438 * 28 27 26 47 47 H 1.08002 * 120.00071 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 1.3497 -4.4853 0.0010 12 6 2.9376 -3.7379 -1.2487 13 6 2.0510 -3.7825 -2.4948 14 7 2.8932 -3.8595 -3.6909 15 6 2.3260 -3.9088 -4.9126 16 8 1.1155 -3.8898 -5.0217 17 6 3.1759 -3.9870 -6.1197 18 6 2.5990 -4.0393 -7.3944 19 6 3.4387 -4.1113 -8.4917 20 6 4.8081 -4.1350 -8.2961 21 7 5.3239 -4.0791 -7.0830 22 6 4.5665 -4.0094 -6.0078 23 6 2.9376 -3.7379 1.2498 24 6 2.0642 -3.7818 2.4771 25 6 1.6929 -2.6067 3.1035 26 6 0.8878 -2.6468 4.2265 27 6 0.4626 -3.8623 4.7292 28 6 0.8383 -5.0375 4.1058 29 6 1.6395 -4.9973 2.9801 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 3.5486 -4.6395 -1.2050 33 1 3.5851 -2.8623 -1.2945 34 1 1.4400 -2.8807 -2.5384 35 1 1.4035 -4.6581 -2.4488 36 1 3.8592 -3.8749 -3.6038 37 1 1.5263 -4.0242 -7.5179 38 1 3.0293 -4.1535 -9.4902 39 1 5.4658 -4.1960 -9.1505 40 1 5.0258 -3.9697 -5.0312 41 1 3.5485 -4.6396 1.2061 42 1 3.5851 -2.8622 1.2957 43 1 2.0290 -1.6574 2.7136 44 1 0.5946 -1.7286 4.7138 45 1 -0.1628 -3.8938 5.6092 46 1 0.5065 -5.9872 4.4987 47 1 1.9333 -5.9155 2.4933 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571526074.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:11 Heat of formation + Delta-G solvation = 29.898997 kcal Electronic energy + Delta-G solvation = -28141.792158 eV Core-core repulsion = 24289.320904 eV Total energy + Delta-G solvation = -3852.471254 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.67763 -39.01851 -38.75555 -36.59042 -34.55553 -32.73214 -32.50651 -31.95659 -30.84076 -30.30206 -29.08647 -27.09437 -24.86555 -24.10384 -23.77031 -22.69966 -21.97154 -20.77332 -20.67067 -19.49548 -18.16944 -17.17255 -16.91847 -16.53662 -16.15293 -15.54188 -15.27818 -15.03214 -14.93499 -14.58255 -14.37117 -14.16233 -13.75736 -13.66426 -13.33847 -13.23894 -12.98711 -12.87533 -12.80114 -12.44598 -12.38492 -11.67383 -11.47121 -11.34831 -11.01090 -10.88561 -10.78066 -10.53167 -10.38978 -10.37267 -10.19327 -10.16574 -9.80872 -9.63142 -9.55517 -9.48628 -8.95708 -8.79407 -8.34473 -8.07238 -6.97233 -5.77502 -3.06361 0.44043 0.94696 1.91746 2.00163 2.85526 3.23031 3.39920 3.45206 3.47456 3.68857 4.03462 4.36482 4.50637 4.56857 4.59216 4.68931 4.80902 5.13145 5.26091 5.31957 5.34245 5.42478 5.45065 5.51974 5.58761 5.67781 5.77514 5.81646 5.84048 5.96394 6.02785 6.10517 6.14547 6.23614 6.27252 6.37263 6.42270 6.48550 6.66212 6.67278 6.71055 6.79634 6.92256 6.97917 7.13640 7.36886 7.55805 7.60400 7.62857 7.66493 8.27727 8.39285 9.51375 10.08636 10.43531 11.44162 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011555 B = 0.002728 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.598677 B =10261.249940 C =11745.152697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.006 4.006 3 Si 0.895 3.105 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.235 4.235 8 H 0.069 0.931 9 N -0.715 5.715 10 C 0.187 3.813 11 H 0.055 0.945 12 C -0.140 4.140 13 C 0.126 3.874 14 N -0.718 5.718 15 C 0.556 3.444 16 O -0.533 6.533 17 C -0.180 4.180 18 C -0.019 4.019 19 C -0.180 4.180 20 C 0.115 3.885 21 N -0.488 5.488 22 C 0.132 3.868 23 C -0.094 4.094 24 C -0.057 4.057 25 C -0.079 4.079 26 C -0.124 4.124 27 C -0.136 4.136 28 C -0.133 4.133 29 C -0.130 4.130 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.395 0.605 37 H 0.148 0.852 38 H 0.142 0.858 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.054 0.946 42 H 0.075 0.925 43 H 0.133 0.867 44 H 0.113 0.887 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.198 -11.529 -6.838 15.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.203 4.203 3 Si 0.727 3.273 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.355 5.355 10 C 0.075 3.925 11 H 0.073 0.927 12 C -0.180 4.180 13 C 0.004 3.996 14 N -0.368 5.368 15 C 0.341 3.659 16 O -0.411 6.411 17 C -0.185 4.185 18 C -0.046 4.046 19 C -0.200 4.200 20 C -0.041 4.041 21 N -0.197 5.197 22 C -0.026 4.026 23 C -0.133 4.133 24 C -0.057 4.057 25 C -0.097 4.097 26 C -0.142 4.142 27 C -0.155 4.155 28 C -0.151 4.151 29 C -0.148 4.148 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.230 0.770 37 H 0.166 0.834 38 H 0.160 0.840 39 H 0.177 0.823 40 H 0.176 0.824 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.151 0.849 44 H 0.131 0.869 45 H 0.128 0.872 46 H 0.128 0.872 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.302 -11.359 -6.786 15.620 hybrid contribution -0.355 1.112 -0.067 1.170 sum 7.947 -10.246 -6.853 14.666 Atomic orbital electron populations 1.69637 1.04980 1.25638 1.56966 1.24666 0.95288 0.97307 1.03011 0.86461 0.78682 0.84420 0.77758 1.21473 1.21840 1.21337 1.18969 0.90738 0.83932 1.43014 0.91348 1.42364 1.05658 0.99540 1.87899 1.20051 0.92430 0.90065 0.89975 0.92653 1.22284 0.99076 1.01157 0.95518 1.21443 0.93266 1.03046 0.81844 1.46033 1.10515 1.74063 1.06198 1.18001 0.87603 0.77238 0.83039 1.90800 1.13992 1.49715 1.86568 1.21158 0.95328 1.06743 0.95271 1.21789 1.01636 0.90433 0.90723 1.22178 0.94838 1.02831 1.00122 1.22993 0.93432 0.92785 0.94936 1.67707 1.40355 1.12641 0.98969 1.23015 0.89313 0.92367 0.97896 1.21152 0.97312 1.01268 0.93593 1.19794 0.97677 0.92576 0.95660 1.21283 0.95982 0.99015 0.93428 1.21146 0.98543 0.97273 0.97236 1.20978 1.01212 0.92950 1.00312 1.20922 0.99684 0.97562 0.96931 1.20960 0.99603 0.97271 0.96959 0.93509 0.78060 0.93012 0.90795 0.89223 0.92346 0.77022 0.83442 0.84032 0.82288 0.82351 0.92715 0.90680 0.84873 0.86911 0.87248 0.87207 0.87048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.52 13.06 55.49 0.72 -25.79 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 3 Si 0.90 21.41 29.55 -169.99 -5.02 16.39 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.24 -5.72 7.90 -15.06 -0.12 -5.84 16 8 H 0.07 1.62 6.64 -52.49 -0.35 1.27 16 9 N -0.71 -15.71 4.14 -53.42 -0.22 -15.93 16 10 C 0.19 3.23 2.67 -67.93 -0.18 3.04 16 11 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 12 C -0.14 -2.11 4.73 -26.73 -0.13 -2.24 16 13 C 0.13 2.06 5.56 -4.05 -0.02 2.04 16 14 N -0.72 -9.94 5.51 -61.25 -0.34 -10.28 16 15 C 0.56 8.54 7.78 -12.33 -0.10 8.44 16 16 O -0.53 -10.31 16.42 5.32 0.09 -10.22 16 17 C -0.18 -2.23 5.89 -104.82 -0.62 -2.84 16 18 C -0.02 -0.21 9.72 -38.87 -0.38 -0.59 16 19 C -0.18 -1.49 10.10 -39.49 -0.40 -1.89 16 20 C 0.12 1.00 11.17 -17.47 -0.20 0.80 16 21 N -0.49 -5.34 10.35 -12.91 -0.13 -5.47 16 22 C 0.13 1.43 10.71 -17.13 -0.18 1.25 16 23 C -0.09 -1.51 4.75 -27.88 -0.13 -1.65 16 24 C -0.06 -0.98 4.95 -104.62 -0.52 -1.50 16 25 C -0.08 -1.48 9.32 -39.58 -0.37 -1.85 16 26 C -0.12 -2.12 10.05 -39.58 -0.40 -2.52 16 27 C -0.14 -2.09 10.05 -39.58 -0.40 -2.48 16 28 C -0.13 -1.95 10.05 -39.59 -0.40 -2.35 16 29 C -0.13 -2.00 9.70 -39.59 -0.38 -2.38 16 30 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.39 9.62 8.03 -40.82 -0.33 9.29 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 1.21 7.11 -51.93 -0.37 0.84 16 34 H 0.09 1.86 7.75 -51.92 -0.40 1.45 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.40 4.22 6.54 -40.82 -0.27 3.95 16 37 H 0.15 1.59 7.74 -52.49 -0.41 1.18 16 38 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.16 0.87 8.06 -52.49 -0.42 0.44 16 40 H 0.16 1.34 6.42 -52.49 -0.34 1.01 16 41 H 0.05 0.75 8.09 -51.93 -0.42 0.33 16 42 H 0.07 1.32 7.05 -51.93 -0.37 0.95 16 43 H 0.13 2.80 7.39 -52.49 -0.39 2.41 16 44 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 45 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 46 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 47 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 394.79 15.07 5.95 5.95 Total: -1.00 -31.33 394.79 -10.54 -41.86 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: -6.57 Total: 16.30 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -5.01 Total: -12.80 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.03 Total: -57.47 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.33 -10.54 -41.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571526074.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.762 kcal (2) G-P(sol) polarization free energy of solvation -31.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds