Wall clock time and date at job start Tue Mar 31 2020 22:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00041 * 2 1 4 4 H 1.48500 * 109.46856 * 239.99931 * 3 2 1 5 5 H 1.48500 * 109.47361 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47367 * 120.00032 * 3 2 1 7 7 C 1.38814 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00255 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99874 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99826 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.47216 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47032 * 300.00076 * 10 9 7 13 13 C 1.52998 * 109.47450 * 294.99664 * 12 10 9 14 14 N 1.46494 * 109.47460 * 179.97438 * 13 12 10 15 15 C 1.34779 * 120.00213 * 180.02562 * 14 13 12 16 16 O 1.21551 * 119.99493 * 359.97438 * 15 14 13 17 17 C 1.47837 * 120.00264 * 180.02562 * 15 14 13 18 18 C 1.40024 * 120.56021 * 179.97438 * 17 15 14 19 19 C 1.38361 * 118.28577 * 179.97438 * 18 17 15 20 20 C 1.38351 * 119.30683 * 0.28083 * 19 18 17 21 21 N 1.31932 * 121.07786 * 359.43803 * 20 19 18 22 22 C 1.31700 * 121.87841 * 0.55406 * 21 20 19 23 23 C 1.53000 * 109.46951 * 60.00042 * 10 9 7 24 24 C 1.50703 * 109.47160 * 65.00290 * 23 10 9 25 25 C 1.38239 * 119.99431 * 269.72591 * 24 23 10 26 26 C 1.38233 * 119.99516 * 179.76719 * 25 24 23 27 27 C 1.38241 * 119.99924 * 0.50495 * 26 25 24 28 28 C 1.38226 * 120.00009 * 359.74715 * 27 26 25 29 29 C 1.38231 * 120.00278 * 0.02562 * 28 27 26 30 30 H 0.96995 * 120.00367 * 0.02562 * 1 2 3 31 31 H 0.96993 * 120.00558 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.47288 * 174.99730 * 12 10 9 33 33 H 1.08998 * 109.47224 * 55.00475 * 12 10 9 34 34 H 1.09012 * 109.46666 * 60.00063 * 13 12 10 35 35 H 1.08996 * 109.47067 * 300.00715 * 13 12 10 36 36 H 0.97002 * 120.00233 * 0.02562 * 14 13 12 37 37 H 1.07990 * 120.85356 * 359.95512 * 18 17 15 38 38 H 1.08002 * 120.34279 * 179.97438 * 19 18 17 39 39 H 1.07994 * 119.46267 * 179.70338 * 20 19 18 40 40 H 1.07994 * 119.71404 * 179.72350 * 22 21 20 41 41 H 1.09006 * 109.46918 * 185.00070 * 23 10 9 42 42 H 1.09001 * 109.47053 * 304.99855 * 23 10 9 43 43 H 1.07994 * 120.00215 * 359.97438 * 25 24 23 44 44 H 1.08000 * 120.00207 * 180.22564 * 26 25 24 45 45 H 1.08007 * 119.99588 * 179.72465 * 27 26 25 46 46 H 1.07997 * 120.00192 * 179.97438 * 28 27 26 47 47 H 1.08002 * 120.00071 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 1.3497 -4.4853 0.0010 12 6 2.9376 -3.7379 -1.2487 13 6 2.0510 -3.7825 -2.4948 14 7 2.8932 -3.8595 -3.6909 15 6 2.3260 -3.9088 -4.9126 16 8 1.1155 -3.8898 -5.0217 17 6 3.1759 -3.9870 -6.1197 18 6 2.5990 -4.0393 -7.3944 19 6 3.4387 -4.1113 -8.4917 20 6 4.8081 -4.1350 -8.2961 21 7 5.3239 -4.0791 -7.0830 22 6 4.5665 -4.0094 -6.0078 23 6 2.9376 -3.7379 1.2498 24 6 2.0642 -3.7818 2.4771 25 6 1.6929 -2.6067 3.1035 26 6 0.8878 -2.6468 4.2265 27 6 0.4626 -3.8623 4.7292 28 6 0.8383 -5.0375 4.1058 29 6 1.6395 -4.9973 2.9801 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 3.5486 -4.6395 -1.2050 33 1 3.5851 -2.8623 -1.2945 34 1 1.4400 -2.8807 -2.5384 35 1 1.4035 -4.6581 -2.4488 36 1 3.8592 -3.8749 -3.6038 37 1 1.5263 -4.0242 -7.5179 38 1 3.0293 -4.1535 -9.4902 39 1 5.4658 -4.1960 -9.1505 40 1 5.0258 -3.9697 -5.0312 41 1 3.5485 -4.6396 1.2061 42 1 3.5851 -2.8622 1.2957 43 1 2.0290 -1.6574 2.7136 44 1 0.5946 -1.7286 4.7138 45 1 -0.1628 -3.8938 5.6092 46 1 0.5065 -5.9872 4.4987 47 1 1.9333 -5.9155 2.4933 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571526074.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:10 Heat of formation + Delta-G solvation = 10.676121 kcal Electronic energy + Delta-G solvation = -28142.625724 eV Core-core repulsion = 24289.320904 eV Total energy + Delta-G solvation = -3853.304820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.60312 -40.21004 -39.94855 -38.04312 -35.92918 -34.26384 -33.56732 -32.91662 -32.14574 -31.56156 -30.65759 -28.44803 -26.07988 -25.71064 -24.61690 -23.89237 -23.24301 -22.07297 -21.82668 -20.97469 -19.29179 -18.78758 -17.84627 -17.49981 -17.33262 -17.05685 -16.46706 -16.36872 -15.98656 -15.88645 -15.75484 -15.51961 -15.10142 -14.82948 -14.67645 -14.30816 -14.21705 -14.13611 -14.09154 -13.76399 -13.20242 -13.09589 -12.99309 -12.83364 -12.73979 -12.47670 -12.38870 -12.16251 -11.72942 -11.67495 -11.56254 -11.38027 -11.23215 -10.99544 -10.82080 -10.50303 -10.33889 -10.02933 -9.62513 -9.38885 -8.83521 -7.82183 -5.06698 -0.39626 0.17916 0.65739 0.72487 1.46699 1.47027 1.52182 1.78947 2.09767 2.61443 2.83300 3.08526 3.30199 3.52838 3.70219 3.79844 3.91967 3.94933 4.00740 4.02865 4.18293 4.22826 4.31727 4.40981 4.42807 4.45646 4.61724 4.64798 4.69236 4.79785 4.84787 4.88842 4.98927 5.00241 5.10443 5.12278 5.18035 5.29069 5.38378 5.43206 5.47084 5.54211 5.56917 5.65597 5.74172 5.82742 6.05499 6.35279 6.38302 6.46950 6.81683 7.13156 7.45673 8.22550 8.44691 9.41429 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011555 B = 0.002728 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.598677 B =10261.249940 C =11745.152697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.945 3.055 4 H -0.285 1.285 5 H -0.308 1.308 6 H -0.280 1.280 7 C -0.198 4.198 8 H 0.078 0.922 9 N -0.722 5.722 10 C 0.181 3.819 11 H 0.064 0.936 12 C -0.126 4.126 13 C 0.137 3.863 14 N -0.706 5.706 15 C 0.553 3.447 16 O -0.584 6.584 17 C -0.201 4.201 18 C -0.034 4.034 19 C -0.168 4.168 20 C 0.120 3.880 21 N -0.507 5.507 22 C 0.135 3.865 23 C -0.085 4.085 24 C -0.072 4.072 25 C -0.108 4.108 26 C -0.143 4.143 27 C -0.138 4.138 28 C -0.130 4.130 29 C -0.129 4.129 30 H 0.242 0.758 31 H 0.368 0.632 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.038 0.962 35 H 0.057 0.943 36 H 0.413 0.587 37 H 0.140 0.860 38 H 0.177 0.823 39 H 0.197 0.803 40 H 0.177 0.823 41 H 0.093 0.907 42 H 0.056 0.944 43 H 0.097 0.903 44 H 0.112 0.888 45 H 0.136 0.864 46 H 0.145 0.855 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.767 -14.480 -7.577 19.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.264 4.264 3 Si 0.777 3.223 4 H -0.212 1.212 5 H -0.235 1.235 6 H -0.206 1.206 7 C -0.330 4.330 8 H 0.096 0.904 9 N -0.360 5.360 10 C 0.072 3.928 11 H 0.082 0.918 12 C -0.166 4.166 13 C 0.013 3.987 14 N -0.357 5.357 15 C 0.341 3.659 16 O -0.465 6.465 17 C -0.207 4.207 18 C -0.061 4.061 19 C -0.187 4.187 20 C -0.036 4.036 21 N -0.215 5.215 22 C -0.023 4.023 23 C -0.124 4.124 24 C -0.072 4.072 25 C -0.126 4.126 26 C -0.161 4.161 27 C -0.155 4.155 28 C -0.147 4.147 29 C -0.147 4.147 30 H 0.051 0.949 31 H 0.199 0.801 32 H 0.115 0.885 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.251 0.749 37 H 0.158 0.842 38 H 0.194 0.806 39 H 0.213 0.787 40 H 0.194 0.806 41 H 0.111 0.889 42 H 0.075 0.925 43 H 0.115 0.885 44 H 0.130 0.870 45 H 0.154 0.846 46 H 0.163 0.837 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 10.979 -14.350 -7.515 19.569 hybrid contribution -1.101 1.868 0.122 2.172 sum 9.878 -12.482 -7.393 17.551 Atomic orbital electron populations 1.69791 1.06343 1.25032 1.60776 1.25233 0.95798 0.99969 1.05430 0.85622 0.77347 0.81434 0.77894 1.21154 1.23474 1.20630 1.19247 0.91045 0.84533 1.38171 0.90427 1.42498 1.04971 1.00804 1.87698 1.20347 0.92948 0.87962 0.91585 0.91798 1.22139 0.98340 1.02822 0.93280 1.21130 0.93495 1.00519 0.83509 1.45854 1.11243 1.73358 1.05239 1.18530 0.87328 0.75946 0.84122 1.90767 1.16267 1.52190 1.87322 1.20967 0.95726 1.09647 0.94328 1.21955 1.01911 0.90920 0.91281 1.22517 0.94467 1.00992 1.00761 1.23672 0.94171 0.90509 0.95248 1.67803 1.40560 1.13439 0.99729 1.23231 0.88476 0.91627 0.98991 1.21060 0.96836 1.02264 0.92246 1.19948 0.98310 0.92819 0.96115 1.21129 0.98056 0.98359 0.95065 1.21291 0.98964 0.98578 0.97273 1.21306 1.00905 0.92331 1.01002 1.21376 0.98426 0.98703 0.96235 1.21301 0.98937 0.97415 0.97030 0.94890 0.80147 0.88549 0.91838 0.94307 0.92458 0.74914 0.84186 0.80581 0.78672 0.80587 0.88903 0.92505 0.88525 0.86963 0.84622 0.83738 0.84042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.68 13.06 21.65 0.28 -58.40 16 2 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 3 Si 0.95 45.80 29.55 68.60 2.03 47.82 16 4 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 5 H -0.31 -15.57 7.11 99.48 0.71 -14.86 16 6 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 7 C -0.20 -9.88 7.90 84.03 0.66 -9.22 16 8 H 0.08 3.70 6.64 -2.91 -0.02 3.68 16 9 N -0.72 -32.65 4.14 -322.93 -1.34 -33.99 16 10 C 0.18 6.08 2.67 44.99 0.12 6.20 16 11 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 12 C -0.13 -3.57 4.73 30.59 0.14 -3.43 16 13 C 0.14 4.49 5.56 86.38 0.48 4.97 16 14 N -0.71 -19.26 5.51 -465.99 -2.57 -21.83 16 15 C 0.55 17.32 7.78 86.78 0.68 18.00 16 16 O -0.58 -23.72 16.42 -3.88 -0.06 -23.79 16 17 C -0.20 -4.89 5.89 -19.99 -0.12 -5.01 16 18 C -0.03 -0.72 9.72 22.73 0.22 -0.50 16 19 C -0.17 -2.33 10.10 22.33 0.23 -2.10 16 20 C 0.12 1.68 11.17 84.70 0.95 2.62 16 21 N -0.51 -9.76 10.35 -194.75 -2.01 -11.77 16 22 C 0.13 2.69 10.71 85.02 0.91 3.60 16 23 C -0.08 -2.58 4.75 29.85 0.14 -2.44 16 24 C -0.07 -2.39 4.95 -19.86 -0.10 -2.49 16 25 C -0.11 -4.17 9.32 22.27 0.21 -3.96 16 26 C -0.14 -4.97 10.05 22.27 0.22 -4.75 16 27 C -0.14 -3.95 10.05 22.27 0.22 -3.73 16 28 C -0.13 -3.38 10.05 22.27 0.22 -3.15 16 29 C -0.13 -3.56 9.70 22.27 0.22 -3.35 16 30 H 0.24 14.71 8.31 -92.71 -0.77 13.93 16 31 H 0.37 19.23 8.03 -92.71 -0.74 18.49 16 32 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.06 1.96 7.11 -2.39 -0.02 1.95 16 34 H 0.04 1.68 7.75 -2.38 -0.02 1.67 16 35 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.41 8.11 6.54 -92.71 -0.61 7.50 16 37 H 0.14 3.10 7.74 -2.92 -0.02 3.07 16 38 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 39 H 0.20 1.21 8.06 -2.91 -0.02 1.19 16 40 H 0.18 2.61 6.42 -2.91 -0.02 2.59 16 41 H 0.09 2.14 8.09 -2.38 -0.02 2.12 16 42 H 0.06 1.94 7.05 -2.39 -0.02 1.92 16 43 H 0.10 4.35 7.39 -2.91 -0.02 4.33 16 44 H 0.11 3.74 8.06 -2.91 -0.02 3.71 16 45 H 0.14 3.12 8.06 -2.91 -0.02 3.09 16 46 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 47 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -74.01 394.79 1.85 -72.16 By element: Atomic # 1 Polarization: 42.42 SS G_CDS: -0.35 Total: 42.07 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 5.88 Total: -12.28 kcal Atomic # 7 Polarization: -120.35 SS G_CDS: -5.64 Total: -125.99 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.06 Total: -23.79 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -74.01 1.85 -72.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571526074.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.838 kcal (2) G-P(sol) polarization free energy of solvation -74.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds