Wall clock time and date at job start Tue Mar 31 2020 22:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86796 * 120.00360 * 2 1 4 4 H 1.48499 * 109.47439 * 240.00342 * 3 2 1 5 5 H 1.48505 * 109.47008 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47079 * 120.00260 * 3 2 1 7 7 C 1.40030 * 119.99566 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99793 * 179.97438 * 7 2 1 9 9 C 1.41308 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.40597 * 119.78653 * 180.02562 * 9 7 2 11 11 C 1.38342 * 119.14725 * 180.02562 * 10 9 7 12 12 C 1.38635 * 118.68296 * 359.97438 * 11 10 9 13 13 C 1.39758 * 119.49121 * 359.97438 * 12 11 10 14 14 N 1.38832 * 119.58331 * 179.97438 * 13 12 11 15 15 C 1.46957 * 111.00231 * 303.80413 * 14 13 12 16 16 C 1.53046 * 109.36435 * 176.80938 * 15 14 13 17 17 N 1.46957 * 109.36534 * 58.39948 * 16 15 14 18 18 C 1.46903 * 110.99979 * 176.80758 * 17 16 15 19 19 C 1.50696 * 109.47232 * 293.80016 * 18 17 16 20 20 C 1.38291 * 119.96917 * 90.00105 * 19 18 17 21 21 C 1.38240 * 120.10964 * 179.97438 * 20 19 18 22 22 C 1.38166 * 120.05645 * 359.95480 * 21 20 19 23 23 C 1.38710 * 119.94491 * 0.02562 * 22 21 20 24 24 O 1.35899 * 120.05714 * 180.02562 * 23 22 21 25 25 C 1.38115 * 119.97317 * 269.72020 * 19 18 17 26 26 C 1.46957 * 110.88144 * 300.68049 * 17 16 15 27 27 C 1.46954 * 110.99753 * 180.02562 * 14 13 12 28 28 N 1.31978 * 120.83464 * 0.02562 * 13 12 11 29 29 H 0.97010 * 119.99787 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.42072 * 0.03962 * 10 9 7 31 31 H 1.08005 * 120.65995 * 179.97438 * 11 10 9 32 32 H 1.08001 * 120.25330 * 179.73025 * 12 11 10 33 33 H 1.08994 * 109.48607 * 296.77730 * 15 14 13 34 34 H 1.09007 * 109.48754 * 56.84134 * 15 14 13 35 35 H 1.09006 * 109.49057 * 298.43358 * 16 15 14 36 36 H 1.08995 * 109.48685 * 178.36927 * 16 15 14 37 37 H 1.09000 * 109.46787 * 53.80789 * 18 17 16 38 38 H 1.09007 * 109.46785 * 173.79973 * 18 17 16 39 39 H 1.08003 * 119.94463 * 359.97438 * 20 19 18 40 40 H 1.08003 * 119.97171 * 179.97438 * 21 20 19 41 41 H 1.08004 * 120.02552 * 180.02562 * 22 21 20 42 42 H 0.96695 * 113.99783 * 90.00181 * 24 23 22 43 43 H 1.07997 * 120.03208 * 0.02562 * 25 19 18 44 44 H 1.09002 * 109.48876 * 299.35092 * 26 17 16 45 45 H 1.08994 * 109.48899 * 179.28427 * 26 17 16 46 46 H 1.09003 * 109.49216 * 303.15456 * 27 14 13 47 47 H 1.08990 * 109.48801 * 63.22873 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2765 2.7464 0.0006 6 1 3.0953 1.6962 1.2124 7 6 2.0075 -1.2128 -0.0005 8 1 3.0874 -1.2128 -0.0010 9 6 1.3009 -2.4365 -0.0016 10 6 2.0083 -3.6515 -0.0016 11 6 1.3033 -4.8417 -0.0033 12 6 -0.0823 -4.7944 -0.0043 13 6 -0.7283 -3.5551 -0.0031 14 7 -2.1157 -3.5054 -0.0047 15 6 -2.6681 -4.2475 -1.1465 16 6 -4.1965 -4.2358 -1.0679 17 7 -4.6737 -2.8459 -1.0663 18 6 -6.1418 -2.7934 -1.0680 19 6 -6.6628 -3.3464 -2.3694 20 6 -6.9414 -4.6961 -2.4843 21 6 -7.4199 -5.2064 -3.6766 22 6 -7.6219 -4.3685 -4.7565 23 6 -7.3436 -3.0143 -4.6437 24 8 -7.5419 -2.1880 -5.7043 25 6 -6.8671 -2.5039 -3.4446 26 6 -4.1214 -2.1037 0.0755 27 6 -2.5929 -2.1154 -0.0037 28 7 -0.0361 -2.4314 -0.0016 29 1 -0.4850 0.8401 0.0004 30 1 3.0883 -3.6554 -0.0002 31 1 1.8219 -5.7891 -0.0037 32 1 -0.6580 -5.7081 -0.0099 33 1 -2.3481 -3.7761 -2.0757 34 1 -2.3103 -5.2769 -1.1186 35 1 -4.5173 -4.7315 -0.1516 36 1 -4.6089 -4.7610 -1.9294 37 1 -6.5275 -3.3881 -0.2400 38 1 -6.4684 -1.7595 -0.9558 39 1 -6.7849 -5.3525 -1.6411 40 1 -7.6364 -6.2609 -3.7640 41 1 -7.9961 -4.7676 -5.6877 42 1 -8.4273 -1.8011 -5.7413 43 1 -6.6532 -1.4493 -3.3532 44 1 -4.4414 -2.5752 1.0047 45 1 -4.4790 -1.0745 0.0475 46 1 -2.1805 -1.5899 0.8576 47 1 -2.2721 -1.6203 -0.9201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645611857.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:38 Heat of formation + Delta-G solvation = 43.290278 kcal Electronic energy + Delta-G solvation = -28968.520504 eV Core-core repulsion = 25116.629940 eV Total energy + Delta-G solvation = -3851.890564 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.11429 -39.27974 -37.88320 -36.82337 -34.96428 -33.41630 -31.75646 -30.90371 -30.19964 -29.85856 -29.21794 -27.06918 -25.49844 -23.97989 -23.37424 -22.61249 -21.46434 -21.01751 -20.65551 -19.19578 -18.18648 -17.49136 -16.54868 -16.40291 -15.95996 -15.43865 -15.12400 -14.76362 -14.65224 -14.55416 -14.47982 -14.10207 -13.93838 -13.84992 -13.29173 -12.97120 -12.80110 -12.42856 -12.35963 -12.10404 -11.87654 -11.78543 -11.71329 -11.40957 -11.13410 -11.05579 -10.81213 -10.75123 -10.69866 -10.55491 -10.39948 -10.23629 -9.97858 -9.41236 -9.01327 -8.78095 -8.68311 -8.14752 -7.99572 -7.57763 -6.92989 -6.39847 -4.50527 1.06395 1.18069 2.76369 3.04169 3.08795 3.11254 3.23679 3.40970 3.95557 3.97092 4.21127 4.52422 4.62967 4.71563 4.81627 4.95036 5.12613 5.15264 5.23814 5.37433 5.46087 5.50449 5.66538 5.68427 5.76917 5.83704 5.85559 5.89124 6.01406 6.12434 6.18528 6.22218 6.25852 6.28372 6.43103 6.53457 6.63600 6.65596 6.67325 6.81669 6.93206 7.13285 7.15989 7.20656 7.24230 7.46964 7.50773 7.71674 7.81052 7.86517 8.20219 8.39323 8.71875 9.00867 10.10692 10.32119 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013448 B = 0.002834 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.584315 B = 9876.972345 C =10974.127890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.072 3.928 3 Si 0.906 3.094 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.432 4.432 8 H 0.082 0.918 9 C 0.275 3.725 10 C -0.296 4.296 11 C -0.045 4.045 12 C -0.322 4.322 13 C 0.323 3.677 14 N -0.483 5.483 15 C 0.069 3.931 16 C 0.058 3.942 17 N -0.533 5.533 18 C 0.092 3.908 19 C -0.055 4.055 20 C -0.123 4.123 21 C -0.105 4.105 22 C -0.149 4.149 23 C 0.101 3.899 24 O -0.499 6.499 25 C -0.123 4.123 26 C 0.055 3.945 27 C 0.084 3.916 28 N -0.507 5.507 29 H 0.271 0.729 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.044 0.956 34 H 0.080 0.920 35 H 0.039 0.961 36 H 0.079 0.921 37 H 0.043 0.957 38 H 0.083 0.917 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.387 0.613 43 H 0.129 0.871 44 H 0.035 0.965 45 H 0.076 0.924 46 H 0.096 0.904 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.363 -4.460 -4.776 18.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.153 4.153 3 Si 0.731 3.269 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.463 4.463 8 H 0.100 0.900 9 C 0.149 3.851 10 C -0.319 4.319 11 C -0.070 4.070 12 C -0.347 4.347 13 C 0.085 3.915 14 N -0.202 5.202 15 C -0.059 4.059 16 C -0.070 4.070 17 N -0.258 5.258 18 C -0.036 4.036 19 C -0.056 4.056 20 C -0.141 4.141 21 C -0.123 4.123 22 C -0.168 4.168 23 C 0.057 3.943 24 O -0.309 6.309 25 C -0.142 4.142 26 C -0.073 4.073 27 C -0.044 4.044 28 N -0.225 5.225 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.061 0.939 38 H 0.101 0.899 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.243 0.757 43 H 0.147 0.853 44 H 0.054 0.946 45 H 0.094 0.906 46 H 0.114 0.886 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.416 -3.630 -4.896 18.452 hybrid contribution 0.395 -0.086 0.146 0.430 sum -17.021 -3.716 -4.750 18.058 Atomic orbital electron populations 1.70102 1.07073 1.27580 1.28840 1.26023 0.94922 1.00877 0.93515 0.86413 0.80112 0.80605 0.79798 1.19058 1.20273 1.19055 1.19539 0.94155 0.89378 1.43257 0.89989 1.18326 0.87425 0.91930 0.87442 1.21634 0.98565 0.93503 1.18180 1.20691 0.93603 0.96550 0.96127 1.20675 0.94268 0.95856 1.23907 1.19785 0.88099 0.90462 0.93155 1.59361 1.06057 1.15204 1.39620 1.22107 0.92953 0.98823 0.91985 1.22250 0.95250 0.88991 1.00546 1.62189 1.05940 1.13775 1.43854 1.21043 0.88553 1.01033 0.92943 1.19674 0.97138 0.93264 0.95511 1.21121 1.00031 0.94820 0.98159 1.20981 0.99077 0.99598 0.92670 1.21392 1.02655 0.93342 0.99406 1.18480 0.99864 0.89320 0.86608 1.84860 1.37311 1.63643 1.45080 1.21310 1.00451 1.00833 0.91584 1.22387 0.96659 0.97733 0.90530 1.21849 0.90106 0.87967 1.04441 1.68650 1.07833 1.24812 1.21166 0.91758 0.88539 0.88665 0.88834 0.93782 0.90205 0.94285 0.90312 0.93853 0.89891 0.85927 0.85688 0.85709 0.75727 0.85290 0.94649 0.90555 0.88613 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.29 11.46 55.55 0.64 -17.66 16 2 C 0.07 1.80 5.50 -17.34 -0.10 1.71 16 3 Si 0.91 18.54 29.56 -169.99 -5.02 13.52 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.43 -11.53 9.14 -37.74 -0.34 -11.87 16 8 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 9 C 0.28 7.57 6.55 -85.00 -0.56 7.01 16 10 C -0.30 -7.43 9.83 -38.65 -0.38 -7.81 16 11 C -0.05 -1.04 10.15 -39.40 -0.40 -1.44 16 12 C -0.32 -7.48 9.23 -38.87 -0.36 -7.84 16 13 C 0.32 7.93 6.41 -155.31 -1.00 6.93 16 14 N -0.48 -10.16 4.73 -173.01 -0.82 -10.98 16 15 C 0.07 1.24 5.36 -3.77 -0.02 1.22 16 16 C 0.06 0.85 5.25 -3.77 -0.02 0.83 16 17 N -0.53 -7.84 4.70 -235.90 -1.11 -8.95 16 18 C 0.09 1.07 5.12 -4.98 -0.03 1.04 16 19 C -0.06 -0.63 4.89 -104.65 -0.51 -1.14 16 20 C -0.12 -1.25 7.91 -39.56 -0.31 -1.56 16 21 C -0.11 -0.98 10.04 -39.61 -0.40 -1.38 16 22 C -0.15 -1.48 9.99 -39.43 -0.39 -1.87 16 23 C 0.10 1.12 6.70 -39.22 -0.26 0.85 16 24 O -0.50 -5.01 13.50 -19.42 -0.26 -5.27 16 25 C -0.12 -1.42 9.64 -39.44 -0.38 -1.80 16 26 C 0.05 0.87 5.61 -3.76 -0.02 0.85 16 27 C 0.08 1.71 4.78 -3.76 -0.02 1.69 16 28 N -0.51 -13.72 6.18 -10.33 -0.06 -13.78 16 29 H 0.27 6.36 8.29 -40.82 -0.34 6.02 16 30 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 31 H 0.10 1.88 8.06 -52.48 -0.42 1.45 16 32 H 0.09 1.96 7.15 -52.49 -0.38 1.59 16 33 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.37 6.77 -51.93 -0.35 1.02 16 35 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.08 1.06 5.95 -51.93 -0.31 0.75 16 37 H 0.04 0.47 8.06 -51.93 -0.42 0.05 16 38 H 0.08 0.88 7.97 -51.93 -0.41 0.47 16 39 H 0.12 1.10 7.99 -52.48 -0.42 0.68 16 40 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 41 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 42 H 0.39 1.84 9.06 45.56 0.41 2.25 16 43 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 44 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 1.10 8.07 -51.93 -0.42 0.68 16 46 H 0.10 2.19 7.82 -51.93 -0.41 1.78 16 47 H 0.06 1.41 8.04 -51.93 -0.42 0.99 16 LS Contribution 381.29 15.07 5.75 5.75 Total: -1.00 -30.65 381.29 -12.44 -43.09 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -6.05 Total: 8.87 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -5.50 Total: -14.58 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: -1.35 Total: -51.37 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.26 Total: -5.27 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.02 Total: 13.52 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.65 -12.44 -43.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645611857.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.380 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds