Wall clock time and date at job start Tue Mar 31 2020 22:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86796 * 120.00360 * 2 1 4 4 H 1.48499 * 109.47439 * 240.00342 * 3 2 1 5 5 H 1.48505 * 109.47008 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47079 * 120.00260 * 3 2 1 7 7 C 1.40030 * 119.99566 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99793 * 179.97438 * 7 2 1 9 9 C 1.41308 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.40597 * 119.78653 * 180.02562 * 9 7 2 11 11 C 1.38342 * 119.14725 * 180.02562 * 10 9 7 12 12 C 1.38635 * 118.68296 * 359.97438 * 11 10 9 13 13 C 1.39758 * 119.49121 * 359.97438 * 12 11 10 14 14 N 1.38832 * 119.58331 * 179.97438 * 13 12 11 15 15 C 1.46957 * 111.00231 * 303.80413 * 14 13 12 16 16 C 1.53046 * 109.36435 * 176.80938 * 15 14 13 17 17 N 1.46957 * 109.36534 * 58.39948 * 16 15 14 18 18 C 1.46903 * 110.99979 * 176.80758 * 17 16 15 19 19 C 1.50696 * 109.47232 * 293.80016 * 18 17 16 20 20 C 1.38291 * 119.96917 * 90.00105 * 19 18 17 21 21 C 1.38240 * 120.10964 * 179.97438 * 20 19 18 22 22 C 1.38166 * 120.05645 * 359.95480 * 21 20 19 23 23 C 1.38710 * 119.94491 * 0.02562 * 22 21 20 24 24 O 1.35899 * 120.05714 * 180.02562 * 23 22 21 25 25 C 1.38115 * 119.97317 * 269.72020 * 19 18 17 26 26 C 1.46957 * 110.88144 * 300.68049 * 17 16 15 27 27 C 1.46954 * 110.99753 * 180.02562 * 14 13 12 28 28 N 1.31978 * 120.83464 * 0.02562 * 13 12 11 29 29 H 0.97010 * 119.99787 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.42072 * 0.03962 * 10 9 7 31 31 H 1.08005 * 120.65995 * 179.97438 * 11 10 9 32 32 H 1.08001 * 120.25330 * 179.73025 * 12 11 10 33 33 H 1.08994 * 109.48607 * 296.77730 * 15 14 13 34 34 H 1.09007 * 109.48754 * 56.84134 * 15 14 13 35 35 H 1.09006 * 109.49057 * 298.43358 * 16 15 14 36 36 H 1.08995 * 109.48685 * 178.36927 * 16 15 14 37 37 H 1.09000 * 109.46787 * 53.80789 * 18 17 16 38 38 H 1.09007 * 109.46785 * 173.79973 * 18 17 16 39 39 H 1.08003 * 119.94463 * 359.97438 * 20 19 18 40 40 H 1.08003 * 119.97171 * 179.97438 * 21 20 19 41 41 H 1.08004 * 120.02552 * 180.02562 * 22 21 20 42 42 H 0.96695 * 113.99783 * 90.00181 * 24 23 22 43 43 H 1.07997 * 120.03208 * 0.02562 * 25 19 18 44 44 H 1.09002 * 109.48876 * 299.35092 * 26 17 16 45 45 H 1.08994 * 109.48899 * 179.28427 * 26 17 16 46 46 H 1.09003 * 109.49216 * 303.15456 * 27 14 13 47 47 H 1.08990 * 109.48801 * 63.22873 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2765 2.7464 0.0006 6 1 3.0953 1.6962 1.2124 7 6 2.0075 -1.2128 -0.0005 8 1 3.0874 -1.2128 -0.0010 9 6 1.3009 -2.4365 -0.0016 10 6 2.0083 -3.6515 -0.0016 11 6 1.3033 -4.8417 -0.0033 12 6 -0.0823 -4.7944 -0.0043 13 6 -0.7283 -3.5551 -0.0031 14 7 -2.1157 -3.5054 -0.0047 15 6 -2.6681 -4.2475 -1.1465 16 6 -4.1965 -4.2358 -1.0679 17 7 -4.6737 -2.8459 -1.0663 18 6 -6.1418 -2.7934 -1.0680 19 6 -6.6628 -3.3464 -2.3694 20 6 -6.9414 -4.6961 -2.4843 21 6 -7.4199 -5.2064 -3.6766 22 6 -7.6219 -4.3685 -4.7565 23 6 -7.3436 -3.0143 -4.6437 24 8 -7.5419 -2.1880 -5.7043 25 6 -6.8671 -2.5039 -3.4446 26 6 -4.1214 -2.1037 0.0755 27 6 -2.5929 -2.1154 -0.0037 28 7 -0.0361 -2.4314 -0.0016 29 1 -0.4850 0.8401 0.0004 30 1 3.0883 -3.6554 -0.0002 31 1 1.8219 -5.7891 -0.0037 32 1 -0.6580 -5.7081 -0.0099 33 1 -2.3481 -3.7761 -2.0757 34 1 -2.3103 -5.2769 -1.1186 35 1 -4.5173 -4.7315 -0.1516 36 1 -4.6089 -4.7610 -1.9294 37 1 -6.5275 -3.3881 -0.2400 38 1 -6.4684 -1.7595 -0.9558 39 1 -6.7849 -5.3525 -1.6411 40 1 -7.6364 -6.2609 -3.7640 41 1 -7.9961 -4.7676 -5.6877 42 1 -8.4273 -1.8011 -5.7413 43 1 -6.6532 -1.4493 -3.3532 44 1 -4.4414 -2.5752 1.0047 45 1 -4.4790 -1.0745 0.0475 46 1 -2.1805 -1.5899 0.8576 47 1 -2.2721 -1.6203 -0.9201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645611857.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:37 Heat of formation + Delta-G solvation = 23.585906 kcal Electronic energy + Delta-G solvation = -28969.374950 eV Core-core repulsion = 25116.629940 eV Total energy + Delta-G solvation = -3852.745010 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.19637 -40.61550 -39.32669 -37.80042 -36.36695 -35.23291 -32.80334 -32.56533 -31.72036 -31.10150 -30.53017 -28.44646 -27.23269 -25.23110 -24.78811 -23.50701 -22.94605 -22.47867 -22.05330 -20.67719 -19.38326 -18.94590 -18.04310 -17.29677 -16.83909 -16.74847 -16.44977 -16.34345 -16.18572 -16.02155 -15.69098 -15.58330 -15.32285 -14.88012 -14.67111 -14.58705 -13.91798 -13.88739 -13.72200 -13.23443 -13.14819 -13.04161 -12.83306 -12.77398 -12.67012 -12.59002 -12.37012 -12.31051 -12.19141 -11.88285 -11.83001 -11.73858 -11.32963 -11.22579 -10.50430 -9.92424 -9.81063 -9.55598 -9.49815 -9.25255 -8.78601 -8.27602 -6.49688 0.29848 0.40853 0.89509 1.19166 1.40115 1.51409 1.54537 2.22882 2.59499 2.77437 3.01288 3.10759 3.31719 3.78285 3.89108 3.92542 3.98145 4.10302 4.19725 4.24719 4.26783 4.38287 4.43040 4.43631 4.51649 4.56550 4.68077 4.69063 4.73597 4.81111 4.86155 4.92672 4.96062 5.01183 5.02336 5.08030 5.18263 5.26459 5.40700 5.48386 5.49664 5.61892 5.65413 5.87286 5.91325 5.94368 5.99243 6.07606 6.11625 6.31673 6.49959 6.79287 6.88340 7.06152 8.18452 8.45401 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013448 B = 0.002834 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.584315 B = 9876.972345 C =10974.127890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.027 3.973 3 Si 0.984 3.016 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.467 4.467 8 H 0.086 0.914 9 C 0.239 3.761 10 C -0.320 4.320 11 C -0.042 4.042 12 C -0.324 4.324 13 C 0.303 3.697 14 N -0.480 5.480 15 C 0.070 3.930 16 C 0.069 3.931 17 N -0.548 5.548 18 C 0.096 3.904 19 C -0.066 4.066 20 C -0.128 4.128 21 C -0.103 4.103 22 C -0.155 4.155 23 C 0.091 3.909 24 O -0.514 6.514 25 C -0.141 4.141 26 C 0.069 3.931 27 C 0.099 3.901 28 N -0.533 5.533 29 H 0.277 0.723 30 H 0.106 0.894 31 H 0.134 0.866 32 H 0.120 0.880 33 H 0.015 0.985 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.096 0.904 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.138 0.862 40 H 0.152 0.848 41 H 0.141 0.859 42 H 0.408 0.592 43 H 0.122 0.878 44 H 0.046 0.954 45 H 0.089 0.911 46 H 0.063 0.937 47 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.947 -5.702 -4.962 20.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.196 4.196 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.499 4.499 8 H 0.104 0.896 9 C 0.113 3.887 10 C -0.343 4.343 11 C -0.066 4.066 12 C -0.348 4.348 13 C 0.065 3.935 14 N -0.199 5.199 15 C -0.057 4.057 16 C -0.059 4.059 17 N -0.273 5.273 18 C -0.030 4.030 19 C -0.067 4.067 20 C -0.146 4.146 21 C -0.121 4.121 22 C -0.173 4.173 23 C 0.047 3.953 24 O -0.327 6.327 25 C -0.161 4.161 26 C -0.059 4.059 27 C -0.029 4.029 28 N -0.252 5.252 29 H 0.087 0.913 30 H 0.124 0.876 31 H 0.152 0.848 32 H 0.138 0.862 33 H 0.034 0.966 34 H 0.110 0.890 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.156 0.844 40 H 0.169 0.831 41 H 0.159 0.841 42 H 0.267 0.733 43 H 0.140 0.860 44 H 0.064 0.936 45 H 0.108 0.892 46 H 0.081 0.919 47 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -19.037 -4.893 -5.088 20.304 hybrid contribution 0.807 0.202 0.142 0.844 sum -18.231 -4.691 -4.946 19.463 Atomic orbital electron populations 1.70214 1.08503 1.28764 1.28881 1.26904 0.95821 1.04146 0.92694 0.85236 0.78659 0.75791 0.79819 1.18705 1.19224 1.18481 1.19887 0.94602 0.90432 1.44937 0.89619 1.18836 0.88187 0.93349 0.88349 1.21823 0.99245 0.93761 1.19465 1.21105 0.93736 0.97439 0.94366 1.21026 0.94778 0.96318 1.22719 1.20336 0.89702 0.90665 0.92774 1.59468 1.04352 1.15510 1.40547 1.22208 0.95519 0.98446 0.89494 1.22168 0.92375 0.89378 1.01960 1.62112 1.08261 1.13710 1.43240 1.21061 0.86109 1.02017 0.93847 1.19691 0.97895 0.93940 0.95151 1.21339 0.99773 0.94426 0.99060 1.21314 0.97890 1.00845 0.92021 1.21651 1.02343 0.92919 1.00399 1.18646 1.00042 0.90068 0.86533 1.84797 1.39293 1.63820 1.44819 1.21390 1.01523 1.00788 0.92361 1.22172 0.93070 0.99089 0.91585 1.21572 0.93291 0.87165 1.00884 1.68636 1.08022 1.26361 1.22180 0.91275 0.87592 0.84847 0.86180 0.96644 0.89029 0.92914 0.88551 0.92227 0.89202 0.84371 0.83081 0.84126 0.73318 0.86001 0.93603 0.89239 0.91860 0.96098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.69 11.46 21.84 0.25 -39.44 16 2 C 0.03 1.39 5.50 85.29 0.47 1.86 16 3 Si 0.98 38.85 29.56 68.60 2.03 40.88 16 4 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 5 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 6 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 7 C -0.47 -25.95 9.14 23.46 0.21 -25.74 16 8 H 0.09 4.47 7.85 -2.91 -0.02 4.45 16 9 C 0.24 13.69 6.55 40.19 0.26 13.96 16 10 C -0.32 -16.39 9.83 22.87 0.22 -16.17 16 11 C -0.04 -1.91 10.15 22.39 0.23 -1.69 16 12 C -0.32 -14.85 9.23 22.73 0.21 -14.64 16 13 C 0.30 15.22 6.41 133.40 0.85 16.08 16 14 N -0.48 -20.44 4.73 -701.29 -3.32 -23.75 16 15 C 0.07 2.51 5.36 86.31 0.46 2.97 16 16 C 0.07 1.90 5.25 86.31 0.45 2.35 16 17 N -0.55 -15.47 4.70 -900.26 -4.23 -19.70 16 18 C 0.10 2.04 5.12 85.56 0.44 2.48 16 19 C -0.07 -1.38 4.89 -19.88 -0.10 -1.47 16 20 C -0.13 -2.23 7.91 22.28 0.18 -2.05 16 21 C -0.10 -1.61 10.04 22.25 0.22 -1.39 16 22 C -0.15 -2.72 9.99 22.37 0.22 -2.49 16 23 C 0.09 1.90 6.70 22.51 0.15 2.05 16 24 O -0.51 -9.85 13.50 -92.42 -1.25 -11.10 16 25 C -0.14 -3.16 9.64 22.36 0.22 -2.94 16 26 C 0.07 2.15 5.61 86.31 0.48 2.64 16 27 C 0.10 4.19 4.78 86.31 0.41 4.61 16 28 N -0.53 -30.18 6.18 -186.58 -1.15 -31.33 16 29 H 0.28 13.49 8.29 -92.70 -0.77 12.72 16 30 H 0.11 5.03 8.06 -2.91 -0.02 5.01 16 31 H 0.13 4.92 8.06 -2.91 -0.02 4.90 16 32 H 0.12 4.77 7.15 -2.91 -0.02 4.75 16 33 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.09 3.01 6.77 -2.38 -0.02 2.99 16 35 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.10 2.34 5.95 -2.39 -0.01 2.33 16 37 H 0.06 1.09 8.06 -2.39 -0.02 1.07 16 38 H 0.09 1.77 7.97 -2.38 -0.02 1.75 16 39 H 0.14 1.95 7.99 -2.91 -0.02 1.92 16 40 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 41 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 42 H 0.41 3.45 9.06 -74.06 -0.67 2.78 16 43 H 0.12 2.77 8.06 -2.91 -0.02 2.75 16 44 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.09 2.55 8.07 -2.39 -0.02 2.53 16 46 H 0.06 3.06 7.82 -2.39 -0.02 3.05 16 47 H 0.02 1.03 8.04 -2.39 -0.02 1.01 16 Total: -1.00 -69.60 381.29 -1.75 -71.35 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: 0.31 Total: 32.69 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: 5.61 Total: -19.60 kcal Atomic # 7 Polarization: -105.77 SS G_CDS: -8.45 Total: -114.22 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -1.25 Total: -11.10 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Total: -69.60 -1.75 -71.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645611857.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.934 kcal (2) G-P(sol) polarization free energy of solvation -69.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds