Wall clock time and date at job start Tue Mar 31 2020 22:35:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86796 * 119.99912 * 2 1
4 4 H 1.48506 * 109.46992 * 180.02562 * 3 2 1
5 5 H 1.48493 * 109.47526 * 300.00135 * 3 2 1
6 6 H 1.48496 * 109.47161 * 60.00522 * 3 2 1
7 7 C 1.38814 * 119.99904 * 180.02562 * 2 1 3
8 8 H 1.08001 * 120.00052 * 179.97438 * 7 2 1
9 9 N 1.36944 * 120.00063 * 359.97438 * 7 2 1
10 10 C 1.46493 * 119.99954 * 179.97438 * 9 7 2
11 11 H 1.09005 * 109.47466 * 34.99770 * 10 9 7
12 12 C 1.53004 * 109.46967 * 154.99967 * 10 9 7
13 13 N 1.46500 * 109.47089 * 304.99862 * 12 10 9
14 14 C 1.34774 * 120.00229 * 180.02562 * 13 12 10
15 15 O 1.21700 * 119.99707 * 359.97438 * 14 13 12
16 16 C 1.46669 * 120.00365 * 180.02562 * 14 13 12
17 17 C 1.37758 * 126.22673 * 179.97438 * 16 14 13
18 18 C 1.40112 * 107.10344 * 180.02562 * 17 16 14
19 19 C 1.35569 * 108.07665 * 359.97438 * 18 17 16
20 20 N 1.36010 * 108.63512 * 359.96859 * 19 18 17
21 21 H 0.97001 * 125.62788 * 179.97438 * 20 19 18
22 22 C 1.51506 * 110.16764 * 179.97438 * 19 18 17
23 23 C 1.54403 * 105.02700 * 343.02137 * 22 19 18
24 24 C 1.51353 * 141.73449 * 179.97438 * 18 17 16
25 25 C 1.50706 * 109.47293 * 274.99790 * 10 9 7
26 26 C 1.38238 * 119.99828 * 319.73008 * 25 10 9
27 27 C 1.38229 * 119.99714 * 179.78951 * 26 25 10
28 28 C 1.38235 * 120.00048 * 0.43584 * 27 26 25
29 29 C 1.38230 * 120.00247 * 359.81531 * 28 27 26
30 30 C 1.38235 * 119.99964 * 359.97438 * 29 28 27
31 31 H 0.97000 * 120.00310 * 359.97438 * 1 2 3
32 32 H 0.96997 * 119.99649 * 0.02562 * 9 7 2
33 33 H 1.09007 * 109.46896 * 185.00113 * 12 10 9
34 34 H 1.08994 * 109.47326 * 64.99935 * 12 10 9
35 35 H 0.96999 * 119.99686 * 359.97438 * 13 12 10
36 36 H 1.07995 * 126.44570 * 359.97438 * 17 16 14
37 37 H 1.09001 * 110.32479 * 224.13749 * 22 19 18
38 38 H 1.08993 * 110.41568 * 101.95881 * 22 19 18
39 39 H 1.08993 * 110.92624 * 267.66498 * 23 22 19
40 40 H 1.09004 * 110.94913 * 144.03612 * 23 22 19
41 41 H 1.09002 * 110.34086 * 78.11741 * 24 18 17
42 42 H 1.09000 * 110.33788 * 315.97174 * 24 18 17
43 43 H 1.07997 * 119.99757 * 359.97438 * 26 25 10
44 44 H 1.07999 * 120.00014 * 180.27534 * 27 26 25
45 45 H 1.08004 * 119.99732 * 179.83670 * 28 27 26
46 46 H 1.08002 * 120.00291 * 179.97438 * 29 28 27
47 47 H 1.07994 * 120.00283 * 179.97438 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6177 0.0000
4 1 3.7102 1.3463 -0.0006
5 1 1.8914 2.3965 -1.2124
6 1 1.8915 2.3963 1.2125
7 6 2.0102 -1.2022 -0.0005
8 1 3.0903 -1.2022 -0.0010
9 7 1.3255 -2.3881 -0.0005
10 6 2.0580 -3.6568 -0.0017
11 1 2.9692 -3.5509 0.5871
12 6 1.1812 -4.7524 0.6082
13 7 0.7357 -4.3363 1.9403
14 6 -0.0528 -5.1488 2.6715
15 8 -0.3950 -6.2280 2.2249
16 6 -0.4993 -4.7320 4.0050
17 6 -1.3029 -5.4564 4.8578
18 6 -1.4769 -4.6852 6.0145
19 6 -0.7913 -3.5266 5.8547
20 7 -0.1899 -3.5422 4.6349
21 1 0.3629 -2.8344 4.2684
22 6 -0.9481 -2.6532 7.0828
23 6 -2.1650 -3.2345 7.8346
24 6 -2.1610 -4.7054 7.3645
25 6 2.4153 -4.0294 -1.4176
26 6 1.5036 -3.8264 -2.4367
27 6 1.8330 -4.1641 -3.7360
28 6 3.0706 -4.7131 -4.0149
29 6 3.9803 -4.9208 -2.9951
30 6 3.6526 -4.5791 -1.6964
31 1 -0.4850 0.8400 0.0004
32 1 0.3555 -2.3881 -0.0005
33 1 1.7562 -5.6749 0.6891
34 1 0.3132 -4.9201 -0.0293
35 1 1.0088 -3.4764 2.2963
36 1 -1.7208 -6.4343 4.6697
37 1 -1.1410 -1.6209 6.7910
38 1 -0.0557 -2.7095 7.7059
39 1 -3.0845 -2.7324 7.5340
40 1 -2.0236 -3.1704 8.9135
41 1 -1.6001 -5.3249 8.0643
42 1 -3.1818 -5.0749 7.2664
43 1 0.5352 -3.4013 -2.2181
44 1 1.1224 -4.0014 -4.5329
45 1 3.3269 -4.9794 -5.0298
46 1 4.9471 -5.3501 -3.2130
47 1 4.3631 -4.7418 -0.8995
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001664599564.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:35:05
Heat of formation + Delta-G solvation = 46.599742 kcal
Electronic energy + Delta-G solvation = -28440.198108 eV
Core-core repulsion = 24588.451053 eV
Total energy + Delta-G solvation = -3851.747055 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-41.48790 -39.29903 -38.64263 -36.04335 -35.86487 -33.66074 -32.08010 -30.94171
-30.44622 -29.62845 -28.64129 -27.31465 -26.92061 -24.06187 -23.14784 -22.18394
-21.85476 -21.02843 -20.11649 -19.68821 -18.96657 -18.06142 -17.36157 -16.42162
-15.85127 -15.66962 -15.54672 -15.26240 -14.77129 -14.61213 -14.21689 -13.81886
-13.69991 -13.42323 -13.24441 -13.10042 -12.97958 -12.88409 -12.83467 -12.74886
-12.34249 -12.02480 -11.84654 -11.39849 -11.28063 -11.20020 -11.07094 -11.03470
-10.89724 -10.77350 -10.50279 -10.18396 -9.91727 -9.84201 -9.16711 -8.82889
-8.70386 -8.43928 -8.22876 -7.85828 -7.21710 -5.94944 -3.26856 1.60380
1.82884 1.89680 2.70504 2.92706 3.30347 3.38406 3.39662 3.43843
3.63010 4.27213 4.42850 4.45239 4.58189 4.86527 5.04010 5.16225
5.19209 5.30645 5.32515 5.37780 5.39843 5.50763 5.51407 5.56533
5.59505 5.61105 5.72124 5.76292 5.81364 5.88781 6.00065 6.02344
6.05549 6.11282 6.21970 6.26461 6.37026 6.44764 6.58954 6.69582
6.82338 6.90352 6.98753 7.06022 7.24236 7.46960 7.49611 7.56454
7.83126 8.20917 8.44307 9.34129 9.83920 10.20701 11.26197
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.009763 B = 0.003269 C = 0.002576
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2867.189629 B = 8564.352147 C =10868.446058
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.927 5.927
2 C -0.005 4.005
3 Si 0.905 3.095
4 H -0.280 1.280
5 H -0.291 1.291
6 H -0.292 1.292
7 C -0.245 4.245
8 H 0.072 0.928
9 N -0.715 5.715
10 C 0.198 3.802
11 H 0.065 0.935
12 C 0.122 3.878
13 N -0.713 5.713
14 C 0.588 3.412
15 O -0.541 6.541
16 C -0.039 4.039
17 C -0.089 4.089
18 C -0.203 4.203
19 C 0.019 3.981
20 N -0.519 5.519
21 H 0.418 0.582
22 C -0.043 4.043
23 C -0.115 4.115
24 C -0.047 4.047
25 C -0.082 4.082
26 C -0.083 4.083
27 C -0.127 4.127
28 C -0.134 4.134
29 C -0.130 4.130
30 C -0.120 4.120
31 H 0.256 0.744
32 H 0.387 0.613
33 H 0.069 0.931
34 H 0.069 0.931
35 H 0.404 0.596
36 H 0.145 0.855
37 H 0.075 0.925
38 H 0.082 0.918
39 H 0.074 0.926
40 H 0.079 0.921
41 H 0.071 0.929
42 H 0.068 0.932
43 H 0.123 0.877
44 H 0.114 0.886
45 H 0.111 0.889
46 H 0.112 0.888
47 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.583 -8.185 9.655 12.671
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.575 5.575
2 C -0.202 4.202
3 Si 0.736 3.264
4 H -0.205 1.205
5 H -0.218 1.218
6 H -0.219 1.219
7 C -0.376 4.376
8 H 0.090 0.910
9 N -0.356 5.356
10 C 0.087 3.913
11 H 0.083 0.917
12 C -0.002 4.002
13 N -0.364 5.364
14 C 0.375 3.625
15 O -0.419 6.419
16 C -0.152 4.152
17 C -0.115 4.115
18 C -0.209 4.209
19 C -0.100 4.100
20 N -0.114 5.114
21 H 0.255 0.745
22 C -0.081 4.081
23 C -0.153 4.153
24 C -0.085 4.085
25 C -0.086 4.086
26 C -0.102 4.102
27 C -0.145 4.145
28 C -0.152 4.152
29 C -0.148 4.148
30 C -0.139 4.139
31 H 0.066 0.934
32 H 0.221 0.779
33 H 0.088 0.912
34 H 0.087 0.913
35 H 0.240 0.760
36 H 0.162 0.838
37 H 0.093 0.907
38 H 0.100 0.900
39 H 0.093 0.907
40 H 0.097 0.903
41 H 0.089 0.911
42 H 0.087 0.913
43 H 0.141 0.859
44 H 0.132 0.868
45 H 0.130 0.870
46 H 0.130 0.870
47 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges 0.571 -8.689 9.215 12.678
hybrid contribution 0.687 1.932 -0.475 2.105
sum 1.258 -6.756 8.740 11.119
Atomic orbital electron populations
1.69667 1.05054 1.25819 1.56914 1.24728 0.95441 0.97650 1.02379
0.86164 0.78915 0.84102 0.77255 1.20504 1.21768 1.21862 1.19243
0.91064 0.83685 1.43569 0.91009 1.42486 1.05809 0.99270 1.88013
1.19491 0.94978 0.86485 0.90374 0.91702 1.21615 0.98794 0.97266
0.82559 1.45832 1.51017 1.21508 1.18066 1.16984 0.78412 0.84289
0.82832 1.90813 1.57592 1.22231 1.71236 1.20417 1.09824 0.88902
0.96022 1.20603 0.99586 0.99714 0.91608 1.20311 1.06556 0.96452
0.97556 1.21291 1.00050 1.00081 0.88539 1.41590 1.40349 1.16353
1.13142 0.74474 1.20700 0.99330 0.97681 0.90405 1.22325 0.97615
0.95678 0.99668 1.20439 0.99872 0.96335 0.91865 1.20942 0.93628
0.95895 0.98086 1.21002 1.00012 0.97105 0.92043 1.21107 0.96763
0.99887 0.96773 1.20987 0.94511 1.01137 0.98554 1.20984 0.99047
1.01489 0.93257 1.21006 0.96638 0.99848 0.96396 0.93381 0.77852
0.91240 0.91317 0.75985 0.83764 0.90687 0.90012 0.90688 0.90268
0.91097 0.91306 0.85932 0.86822 0.87048 0.86963 0.86758
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -25.89 13.06 55.49 0.72 -25.16 16
2 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16
3 Si 0.90 21.14 29.55 -169.99 -5.02 16.12 16
4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16
5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16
6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16
7 C -0.24 -6.12 9.92 -15.06 -0.15 -6.27 16
8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16
9 N -0.71 -15.69 3.81 -54.55 -0.21 -15.90 16
10 C 0.20 3.57 2.64 -69.08 -0.18 3.39 16
11 H 0.07 1.16 7.94 -51.93 -0.41 0.75 16
12 C 0.12 2.05 5.21 -4.04 -0.02 2.03 16
13 N -0.71 -11.76 5.38 -61.62 -0.33 -12.09 16
14 C 0.59 10.29 7.79 -12.86 -0.10 10.19 16
15 O -0.54 -10.93 16.88 5.19 0.09 -10.84 16
16 C -0.04 -0.62 7.07 -81.79 -0.58 -1.20 16
17 C -0.09 -1.33 10.66 -39.05 -0.42 -1.75 16
18 C -0.20 -2.65 6.89 -104.55 -0.72 -3.37 16
19 C 0.02 0.24 8.02 -81.30 -0.65 -0.41 16
20 N -0.52 -7.11 6.03 -5.24 -0.03 -7.14 16
21 H 0.42 5.20 8.20 -40.82 -0.33 4.86 16
22 C -0.04 -0.39 6.79 -26.75 -0.18 -0.58 16
23 C -0.11 -0.90 7.12 -25.25 -0.18 -1.08 16
24 C -0.05 -0.45 6.78 -26.82 -0.18 -0.63 16
25 C -0.08 -1.46 4.92 -104.62 -0.51 -1.97 16
26 C -0.08 -1.52 9.32 -39.58 -0.37 -1.89 16
27 C -0.13 -2.05 10.05 -39.59 -0.40 -2.45 16
28 C -0.13 -1.96 10.05 -39.59 -0.40 -2.36 16
29 C -0.13 -1.89 10.05 -39.59 -0.40 -2.29 16
30 C -0.12 -1.91 9.67 -39.58 -0.38 -2.29 16
31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16
32 H 0.39 9.27 7.80 -40.82 -0.32 8.95 16
33 H 0.07 1.11 8.14 -51.92 -0.42 0.68 16
34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16
35 H 0.40 6.52 7.28 -40.82 -0.30 6.22 16
36 H 0.14 2.06 8.06 -52.49 -0.42 1.63 16
37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16
39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16
40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16
41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
43 H 0.12 2.40 7.73 -52.49 -0.41 1.99 16
44 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16
45 H 0.11 1.34 8.06 -52.48 -0.42 0.91 16
46 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16
47 H 0.11 1.59 8.04 -52.49 -0.42 1.17 16
LS Contribution 394.96 15.07 5.95 5.95
Total: -1.00 -30.50 394.96 -11.56 -42.06
By element:
Atomic # 1 Polarization: 26.95 SS G_CDS: -6.81 Total: 20.14 kcal
Atomic # 6 Polarization: -7.22 SS G_CDS: -5.92 Total: -13.14 kcal
Atomic # 7 Polarization: -60.44 SS G_CDS: 0.15 Total: -60.29 kcal
Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal
Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal
Total LS contribution 5.95 Total: 5.95 kcal
Total: -30.50 -11.56 -42.06 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001664599564.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.657 kcal
(2) G-P(sol) polarization free energy of solvation -30.498 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.159 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.559 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.057 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.600 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds