Wall clock time and date at job start Tue Mar 31 2020 22:35:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86796 * 119.99912 * 2 1
4 4 H 1.48506 * 109.46992 * 180.02562 * 3 2 1
5 5 H 1.48493 * 109.47526 * 300.00135 * 3 2 1
6 6 H 1.48496 * 109.47161 * 60.00522 * 3 2 1
7 7 C 1.38814 * 119.99904 * 180.02562 * 2 1 3
8 8 H 1.08001 * 120.00052 * 179.97438 * 7 2 1
9 9 N 1.36944 * 120.00063 * 359.97438 * 7 2 1
10 10 C 1.46493 * 119.99954 * 179.97438 * 9 7 2
11 11 H 1.09005 * 109.47466 * 34.99770 * 10 9 7
12 12 C 1.53004 * 109.46967 * 154.99967 * 10 9 7
13 13 N 1.46500 * 109.47089 * 304.99862 * 12 10 9
14 14 C 1.34774 * 120.00229 * 180.02562 * 13 12 10
15 15 O 1.21700 * 119.99707 * 359.97438 * 14 13 12
16 16 C 1.46669 * 120.00365 * 180.02562 * 14 13 12
17 17 C 1.37758 * 126.22673 * 179.97438 * 16 14 13
18 18 C 1.40112 * 107.10344 * 180.02562 * 17 16 14
19 19 C 1.35569 * 108.07665 * 359.97438 * 18 17 16
20 20 N 1.36010 * 108.63512 * 359.96859 * 19 18 17
21 21 H 0.97001 * 125.62788 * 179.97438 * 20 19 18
22 22 C 1.51506 * 110.16764 * 179.97438 * 19 18 17
23 23 C 1.54403 * 105.02700 * 343.02137 * 22 19 18
24 24 C 1.51353 * 141.73449 * 179.97438 * 18 17 16
25 25 C 1.50706 * 109.47293 * 274.99790 * 10 9 7
26 26 C 1.38238 * 119.99828 * 319.73008 * 25 10 9
27 27 C 1.38229 * 119.99714 * 179.78951 * 26 25 10
28 28 C 1.38235 * 120.00048 * 0.43584 * 27 26 25
29 29 C 1.38230 * 120.00247 * 359.81531 * 28 27 26
30 30 C 1.38235 * 119.99964 * 359.97438 * 29 28 27
31 31 H 0.97000 * 120.00310 * 359.97438 * 1 2 3
32 32 H 0.96997 * 119.99649 * 0.02562 * 9 7 2
33 33 H 1.09007 * 109.46896 * 185.00113 * 12 10 9
34 34 H 1.08994 * 109.47326 * 64.99935 * 12 10 9
35 35 H 0.96999 * 119.99686 * 359.97438 * 13 12 10
36 36 H 1.07995 * 126.44570 * 359.97438 * 17 16 14
37 37 H 1.09001 * 110.32479 * 224.13749 * 22 19 18
38 38 H 1.08993 * 110.41568 * 101.95881 * 22 19 18
39 39 H 1.08993 * 110.92624 * 267.66498 * 23 22 19
40 40 H 1.09004 * 110.94913 * 144.03612 * 23 22 19
41 41 H 1.09002 * 110.34086 * 78.11741 * 24 18 17
42 42 H 1.09000 * 110.33788 * 315.97174 * 24 18 17
43 43 H 1.07997 * 119.99757 * 359.97438 * 26 25 10
44 44 H 1.07999 * 120.00014 * 180.27534 * 27 26 25
45 45 H 1.08004 * 119.99732 * 179.83670 * 28 27 26
46 46 H 1.08002 * 120.00291 * 179.97438 * 29 28 27
47 47 H 1.07994 * 120.00283 * 179.97438 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6177 0.0000
4 1 3.7102 1.3463 -0.0006
5 1 1.8914 2.3965 -1.2124
6 1 1.8915 2.3963 1.2125
7 6 2.0102 -1.2022 -0.0005
8 1 3.0903 -1.2022 -0.0010
9 7 1.3255 -2.3881 -0.0005
10 6 2.0580 -3.6568 -0.0017
11 1 2.9692 -3.5509 0.5871
12 6 1.1812 -4.7524 0.6082
13 7 0.7357 -4.3363 1.9403
14 6 -0.0528 -5.1488 2.6715
15 8 -0.3950 -6.2280 2.2249
16 6 -0.4993 -4.7320 4.0050
17 6 -1.3029 -5.4564 4.8578
18 6 -1.4769 -4.6852 6.0145
19 6 -0.7913 -3.5266 5.8547
20 7 -0.1899 -3.5422 4.6349
21 1 0.3629 -2.8344 4.2684
22 6 -0.9481 -2.6532 7.0828
23 6 -2.1650 -3.2345 7.8346
24 6 -2.1610 -4.7054 7.3645
25 6 2.4153 -4.0294 -1.4176
26 6 1.5036 -3.8264 -2.4367
27 6 1.8330 -4.1641 -3.7360
28 6 3.0706 -4.7131 -4.0149
29 6 3.9803 -4.9208 -2.9951
30 6 3.6526 -4.5791 -1.6964
31 1 -0.4850 0.8400 0.0004
32 1 0.3555 -2.3881 -0.0005
33 1 1.7562 -5.6749 0.6891
34 1 0.3132 -4.9201 -0.0293
35 1 1.0088 -3.4764 2.2963
36 1 -1.7208 -6.4343 4.6697
37 1 -1.1410 -1.6209 6.7910
38 1 -0.0557 -2.7095 7.7059
39 1 -3.0845 -2.7324 7.5340
40 1 -2.0236 -3.1704 8.9135
41 1 -1.6001 -5.3249 8.0643
42 1 -3.1818 -5.0749 7.2664
43 1 0.5352 -3.4013 -2.2181
44 1 1.1224 -4.0014 -4.5329
45 1 3.3269 -4.9794 -5.0298
46 1 4.9471 -5.3501 -3.2130
47 1 4.3631 -4.7418 -0.8995
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001664599564.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:35:04
Heat of formation + Delta-G solvation = 29.468585 kcal
Electronic energy + Delta-G solvation = -28440.940970 eV
Core-core repulsion = 24588.451053 eV
Total energy + Delta-G solvation = -3852.489918 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-42.55636 -40.65810 -39.95712 -37.45731 -36.82624 -35.30457 -33.71660 -31.99393
-31.72384 -31.22032 -29.90515 -28.26558 -28.04032 -25.77190 -24.56350 -23.41526
-23.08009 -21.95737 -21.50884 -20.94039 -20.02273 -19.43931 -18.97630 -17.74587
-17.06455 -16.94485 -16.66128 -16.59338 -16.21787 -15.87979 -15.73949 -15.35393
-15.04856 -14.65180 -14.49897 -14.40758 -14.21879 -14.09602 -13.87691 -13.78084
-13.54894 -13.43584 -12.95796 -12.85776 -12.70812 -12.46711 -12.34325 -12.18726
-12.02243 -11.96293 -11.86563 -11.72763 -11.66608 -11.31600 -11.02712 -10.24758
-9.81719 -9.69751 -9.55519 -9.08062 -8.91311 -7.96109 -5.26290 0.38880
0.56426 0.62961 1.44296 1.47941 1.55242 1.65229 1.87182 2.10252
2.31587 2.52644 2.99850 3.38083 3.57425 3.73012 3.77407 3.89806
3.99821 4.13105 4.19293 4.26010 4.29230 4.31543 4.32462 4.39168
4.44719 4.58766 4.66479 4.76664 4.79834 4.86464 4.91435 4.98728
5.02484 5.11406 5.15471 5.21458 5.26333 5.28448 5.34208 5.44933
5.51800 5.67463 5.71557 5.76028 5.91317 5.97837 6.21885 6.25669
6.38719 6.51953 7.05566 7.31634 7.98301 8.25554 9.25897
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.009763 B = 0.003269 C = 0.002576
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2867.189629 B = 8564.352147 C =10868.446058
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.963 5.963
2 C -0.061 4.061
3 Si 0.962 3.038
4 H -0.268 1.268
5 H -0.302 1.302
6 H -0.293 1.293
7 C -0.230 4.230
8 H 0.075 0.925
9 N -0.719 5.719
10 C 0.205 3.795
11 H 0.072 0.928
12 C 0.132 3.868
13 N -0.708 5.708
14 C 0.587 3.413
15 O -0.576 6.576
16 C -0.070 4.070
17 C -0.099 4.099
18 C -0.218 4.218
19 C 0.022 3.978
20 N -0.518 5.518
21 H 0.421 0.579
22 C -0.044 4.044
23 C -0.107 4.107
24 C -0.048 4.048
25 C -0.102 4.102
26 C -0.110 4.110
27 C -0.137 4.137
28 C -0.130 4.130
29 C -0.126 4.126
30 C -0.126 4.126
31 H 0.249 0.751
32 H 0.374 0.626
33 H 0.082 0.918
34 H 0.051 0.949
35 H 0.407 0.593
36 H 0.142 0.858
37 H 0.082 0.918
38 H 0.102 0.898
39 H 0.076 0.924
40 H 0.109 0.891
41 H 0.084 0.916
42 H 0.073 0.927
43 H 0.095 0.905
44 H 0.128 0.872
45 H 0.145 0.855
46 H 0.147 0.853
47 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.447 -8.246 10.711 13.737
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.613 5.613
2 C -0.254 4.254
3 Si 0.792 3.208
4 H -0.193 1.193
5 H -0.230 1.230
6 H -0.220 1.220
7 C -0.362 4.362
8 H 0.093 0.907
9 N -0.358 5.358
10 C 0.096 3.904
11 H 0.090 0.910
12 C 0.008 3.992
13 N -0.358 5.358
14 C 0.376 3.624
15 O -0.457 6.457
16 C -0.182 4.182
17 C -0.126 4.126
18 C -0.224 4.224
19 C -0.098 4.098
20 N -0.114 5.114
21 H 0.259 0.741
22 C -0.082 4.082
23 C -0.145 4.145
24 C -0.085 4.085
25 C -0.105 4.105
26 C -0.129 4.129
27 C -0.155 4.155
28 C -0.148 4.148
29 C -0.143 4.143
30 C -0.145 4.145
31 H 0.058 0.942
32 H 0.207 0.793
33 H 0.100 0.900
34 H 0.069 0.931
35 H 0.243 0.757
36 H 0.160 0.840
37 H 0.100 0.900
38 H 0.120 0.880
39 H 0.094 0.906
40 H 0.127 0.873
41 H 0.103 0.897
42 H 0.092 0.908
43 H 0.113 0.887
44 H 0.145 0.855
45 H 0.162 0.838
46 H 0.165 0.835
47 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges 2.487 -8.767 10.272 13.732
hybrid contribution 0.143 1.843 -0.820 2.022
sum 2.630 -6.925 9.452 12.009
Atomic orbital electron populations
1.69811 1.06379 1.25768 1.59349 1.25350 0.96034 1.00358 1.03674
0.85251 0.78385 0.80762 0.76387 1.19285 1.23012 1.21982 1.19503
0.91226 0.84594 1.40872 0.90711 1.42507 1.05212 1.00056 1.88051
1.19540 0.94719 0.85022 0.91165 0.90990 1.21491 0.98014 0.97385
0.82344 1.45768 1.50800 1.21415 1.17802 1.17237 0.77900 0.83806
0.83446 1.90774 1.58994 1.23650 1.72252 1.20191 1.11781 0.90415
0.95789 1.20821 0.99358 0.99914 0.92554 1.20798 1.06979 0.96102
0.98488 1.22126 0.98347 1.00768 0.88512 1.41591 1.40441 1.15787
1.13582 0.74090 1.20939 1.00924 0.97391 0.88917 1.22375 0.96964
0.93929 1.01205 1.20579 0.99937 0.98045 0.89971 1.20836 0.94816
0.97709 0.97152 1.20945 0.99361 0.98923 0.93656 1.21342 0.98118
0.99879 0.96128 1.21397 0.93473 0.99570 1.00352 1.21417 1.00352
1.00159 0.92413 1.21280 0.95909 0.99303 0.97970 0.94189 0.79331
0.90014 0.93091 0.75737 0.83999 0.89960 0.88021 0.90561 0.87300
0.89733 0.90793 0.88713 0.85450 0.83761 0.83482 0.84759
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.96 -55.36 13.06 21.65 0.28 -55.08 16
2 C -0.06 -3.26 5.50 84.86 0.47 -2.80 16
3 Si 0.96 43.82 29.55 68.60 2.03 45.85 16
4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16
5 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16
6 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16
7 C -0.23 -11.60 9.92 84.03 0.83 -10.77 16
8 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16
9 N -0.72 -32.48 3.81 -326.49 -1.24 -33.73 16
10 C 0.20 7.51 2.64 44.25 0.12 7.63 16
11 H 0.07 2.53 7.94 -2.38 -0.02 2.52 16
12 C 0.13 4.61 5.21 86.38 0.45 5.06 16
13 N -0.71 -24.37 5.38 -467.08 -2.51 -26.89 16
14 C 0.59 21.62 7.79 86.44 0.67 22.29 16
15 O -0.58 -24.48 16.88 -4.35 -0.07 -24.55 16
16 C -0.07 -2.29 7.07 40.24 0.28 -2.00 16
17 C -0.10 -3.07 10.66 22.61 0.24 -2.83 16
18 C -0.22 -5.55 6.89 -19.82 -0.14 -5.69 16
19 C 0.02 0.54 8.02 41.55 0.33 0.87 16
20 N -0.52 -14.37 6.03 -170.49 -1.03 -15.40 16
21 H 0.42 10.69 8.20 -92.71 -0.76 9.93 16
22 C -0.04 -0.69 6.79 30.58 0.21 -0.48 16
23 C -0.11 -1.33 7.12 31.55 0.22 -1.11 16
24 C -0.05 -0.81 6.78 30.54 0.21 -0.60 16
25 C -0.10 -3.62 4.92 -19.86 -0.10 -3.72 16
26 C -0.11 -4.13 9.32 22.27 0.21 -3.93 16
27 C -0.14 -4.31 10.05 22.27 0.22 -4.08 16
28 C -0.13 -3.45 10.05 22.27 0.22 -3.22 16
29 C -0.13 -3.25 10.05 22.27 0.22 -3.03 16
30 C -0.13 -3.75 9.67 22.27 0.22 -3.54 16
31 H 0.25 14.12 8.31 -92.71 -0.77 13.34 16
32 H 0.37 18.83 7.80 -92.71 -0.72 18.10 16
33 H 0.08 2.65 8.14 -2.38 -0.02 2.63 16
34 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16
35 H 0.41 13.63 7.28 -92.71 -0.67 12.96 16
36 H 0.14 4.28 8.06 -2.91 -0.02 4.25 16
37 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16
38 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16
39 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16
40 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16
41 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16
42 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16
43 H 0.09 3.99 7.73 -2.91 -0.02 3.97 16
44 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16
45 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16
46 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16
47 H 0.13 3.38 8.04 -2.91 -0.02 3.35 16
Total: -1.00 -67.65 394.96 1.20 -66.44
By element:
Atomic # 1 Polarization: 56.44 SS G_CDS: -1.15 Total: 55.29 kcal
Atomic # 6 Polarization: -16.84 SS G_CDS: 4.90 Total: -11.94 kcal
Atomic # 7 Polarization: -126.59 SS G_CDS: -4.50 Total: -131.09 kcal
Atomic # 8 Polarization: -24.48 SS G_CDS: -0.07 Total: -24.55 kcal
Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal
Total: -67.65 1.20 -66.44 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001664599564.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 95.912 kcal
(2) G-P(sol) polarization free energy of solvation -67.646 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.266 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.203 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.444 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.469 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds