Wall clock time and date at job start Tue Mar 31 2020 22:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.46986 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47457 * 299.99915 * 3 2 1 6 6 H 1.48501 * 109.47104 * 59.99987 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.46846 * 110.99738 * 66.04780 * 13 12 10 15 15 C 1.53044 * 109.51968 * 185.83487 * 14 13 12 16 16 C 1.53109 * 109.28150 * 300.81833 * 15 14 13 17 17 C 1.53126 * 109.16214 * 57.65538 * 16 15 14 18 18 H 1.08999 * 109.49855 * 62.28038 * 17 16 15 19 19 N 1.46498 * 109.50415 * 182.40513 * 17 16 15 20 20 C 1.34775 * 119.99761 * 274.99713 * 19 17 16 21 21 O 1.21279 * 120.00161 * 0.02562 * 20 19 17 22 22 C 1.50704 * 119.99816 * 180.02562 * 20 19 17 23 23 H 1.09000 * 110.48771 * 321.24611 * 22 20 19 24 24 C 1.54096 * 110.55061 * 84.10307 * 22 20 19 25 25 N 1.47059 * 103.86341 * 118.59455 * 24 22 20 26 26 C 1.33946 * 109.17638 * 0.02562 * 25 24 22 27 27 O 1.21593 * 123.04244 * 179.97438 * 26 25 24 28 28 N 1.33952 * 113.91739 * 359.97438 * 26 25 24 29 29 C 1.46854 * 110.99940 * 190.25481 * 13 12 10 30 30 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 33 33 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 34 34 H 1.08999 * 109.46435 * 305.84790 * 14 13 12 35 35 H 1.09001 * 109.46401 * 65.83402 * 14 13 12 36 36 H 1.09001 * 109.50195 * 60.76714 * 15 14 13 37 37 H 1.09007 * 109.50114 * 180.87863 * 15 14 13 38 38 H 1.08999 * 109.52964 * 177.55910 * 16 15 14 39 39 H 1.09003 * 109.52573 * 297.69192 * 16 15 14 40 40 H 0.96997 * 120.00006 * 95.00223 * 19 17 16 41 41 H 1.09001 * 110.54857 * 237.18681 * 24 22 20 42 42 H 1.09000 * 110.55021 * 0.02562 * 24 22 20 43 43 H 0.96998 * 125.40909 * 180.02562 * 25 24 22 44 44 H 0.96999 * 125.40799 * 180.02562 * 28 26 25 45 45 H 1.09005 * 109.46009 * 294.17618 * 29 13 12 46 46 H 1.08998 * 109.46194 * 54.14497 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8892 2.3965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 2.9636 -6.0182 1.2513 15 6 4.0439 -7.0982 1.1576 16 6 3.3818 -8.4545 0.9000 17 6 2.5522 -8.3730 -0.3846 18 1 3.2081 -8.1581 -1.2282 19 7 1.8692 -9.6496 -0.6076 20 6 2.5085 -10.6547 -1.2382 21 8 3.6493 -10.5024 -1.6206 22 6 1.8057 -11.9678 -1.4682 23 1 1.1942 -12.2296 -0.6047 24 6 0.9453 -11.9045 -2.7450 25 7 1.5262 -12.9397 -3.6131 26 6 2.5506 -13.5231 -2.9772 27 8 3.2126 -14.4174 -3.4675 28 7 2.7798 -13.0322 -1.7521 29 6 1.5153 -7.2560 -0.2463 30 1 -0.4850 0.8401 -0.0004 31 1 0.3535 -2.3906 0.0002 32 1 0.6170 -4.9209 0.8886 33 1 0.6176 -4.9205 -0.8913 34 1 3.4328 -5.0490 1.4205 35 1 2.2928 -6.2466 2.0795 36 1 4.7233 -6.8633 0.3383 37 1 4.6014 -7.1374 2.0935 38 1 4.1499 -9.2199 0.7894 39 1 2.7328 -8.7082 1.7382 40 1 0.9569 -9.7716 -0.3016 41 1 -0.0952 -12.1361 -2.5171 42 1 1.0267 -10.9235 -3.2130 43 1 1.2168 -13.1643 -4.5045 44 1 3.4776 -13.3312 -1.1483 45 1 0.8512 -7.4784 0.5891 46 1 0.9324 -7.1858 -1.1646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665013134.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:37 Heat of formation + Delta-G solvation = -76.801033 kcal Electronic energy + Delta-G solvation = -29281.516525 eV Core-core repulsion = 25013.569148 eV Total energy + Delta-G solvation = -4267.947377 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.74259 -40.04713 -38.94056 -37.63771 -36.55565 -34.99297 -33.89739 -33.45173 -32.76350 -31.24133 -30.57165 -28.91850 -27.48510 -24.81436 -24.61686 -22.92514 -22.71017 -22.19578 -20.90996 -20.01522 -19.23067 -18.42331 -18.01841 -17.90259 -16.81334 -16.43687 -16.12366 -15.99495 -15.38140 -15.28058 -14.98248 -14.77637 -14.58997 -14.41759 -14.17363 -14.04557 -13.89083 -13.53493 -13.48254 -13.35501 -13.21804 -12.74515 -12.53979 -12.13252 -11.58461 -11.51072 -11.40726 -11.11936 -10.91320 -10.77325 -10.67385 -10.60200 -10.42934 -10.35782 -10.25505 -9.82794 -9.51204 -9.38182 -9.32338 -8.50413 -8.02476 -7.92487 -6.45207 -3.85891 2.00457 2.29966 2.54528 2.87614 3.13949 3.25049 3.32149 3.52308 3.71625 3.85333 3.91693 4.12875 4.22914 4.25955 4.63856 4.69547 4.70720 4.89542 4.98663 5.03327 5.11839 5.20466 5.22859 5.28592 5.48523 5.54022 5.63857 5.72722 5.83487 5.87679 5.98378 6.02066 6.11614 6.23206 6.40834 6.49615 6.54678 6.69310 6.90867 7.06067 7.19946 7.30915 7.52525 7.77288 8.03205 8.20928 8.58035 9.15041 9.50694 10.02233 10.72536 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027019 B = 0.001871 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.057253 B =14962.294953 C =15395.153578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.443 3.557 11 O -0.575 6.575 12 C 0.048 3.952 13 N -0.511 5.511 14 C 0.050 3.950 15 C -0.111 4.111 16 C -0.128 4.128 17 C 0.148 3.852 18 H 0.100 0.900 19 N -0.719 5.719 20 C 0.501 3.499 21 O -0.514 6.514 22 C 0.104 3.896 23 H 0.116 0.884 24 C 0.105 3.895 25 N -0.739 5.739 26 C 0.706 3.294 27 O -0.583 6.583 28 N -0.715 5.715 29 C 0.051 3.949 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.023 0.977 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.400 0.600 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.433 0.567 44 H 0.434 0.566 45 H 0.035 0.965 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.945 -22.751 1.014 23.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.122 0.878 9 N -0.201 5.201 10 C 0.228 3.772 11 O -0.459 6.459 12 C -0.083 4.083 13 N -0.236 5.236 14 C -0.077 4.077 15 C -0.150 4.150 16 C -0.166 4.166 17 C 0.044 3.956 18 H 0.118 0.882 19 N -0.371 5.371 20 C 0.284 3.716 21 O -0.388 6.388 22 C -0.007 4.007 23 H 0.134 0.866 24 C -0.021 4.021 25 N -0.402 5.402 26 C 0.405 3.595 27 O -0.460 6.460 28 N -0.377 5.377 29 C -0.078 4.078 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.124 0.876 35 H 0.041 0.959 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.234 0.766 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.275 0.725 44 H 0.277 0.723 45 H 0.053 0.947 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.737 -22.845 0.096 23.149 hybrid contribution -1.329 0.696 0.815 1.707 sum -5.066 -22.149 0.911 22.739 Atomic orbital electron populations 1.69618 1.05933 1.28058 1.50736 1.25260 0.95642 0.99739 0.97347 0.85803 0.79741 0.81136 0.77697 1.19200 1.20750 1.20795 1.19747 0.93401 0.82157 1.47401 0.87822 1.41870 1.09176 1.04596 1.64443 1.19705 0.88428 0.84505 0.84543 1.90500 1.13642 1.86822 1.54981 1.21835 0.93800 0.91108 1.01551 1.61380 1.25122 1.00695 1.36389 1.22324 0.95157 1.01889 0.88359 1.21509 0.98164 0.92909 1.02374 1.21967 0.99382 0.98630 0.96660 1.21017 0.94154 0.80955 0.99508 0.88153 1.46020 1.17800 1.13900 1.59422 1.20716 0.87342 0.85397 0.78181 1.90799 1.17472 1.81468 1.49081 1.21864 0.90932 0.87493 1.00433 0.86597 1.22256 0.97531 0.93901 0.88452 1.45047 1.35211 1.39969 1.19991 1.15859 0.80854 0.81629 0.81182 1.91018 1.52777 1.32958 1.69259 1.44823 1.36928 1.37965 1.18001 1.22249 0.94797 0.89723 1.01028 0.91933 0.77522 0.93378 0.89290 0.87566 0.95919 0.90561 0.91368 0.91587 0.92255 0.76609 0.88486 0.89295 0.72451 0.72298 0.94715 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.96 13.05 55.50 0.72 -23.24 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 20.68 29.55 -169.99 -5.02 15.65 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 7 C -0.30 -8.07 9.68 -14.94 -0.14 -8.22 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -13.75 5.29 -10.96 -0.06 -13.81 16 10 C 0.44 9.95 7.46 -10.98 -0.08 9.86 16 11 O -0.58 -14.89 13.92 5.55 0.08 -14.82 16 12 C 0.05 0.79 5.45 -4.97 -0.03 0.76 16 13 N -0.51 -7.70 4.39 -236.10 -1.04 -8.74 16 14 C 0.05 0.75 5.11 -3.83 -0.02 0.73 16 15 C -0.11 -1.42 6.09 -26.65 -0.16 -1.58 16 16 C -0.13 -1.34 5.58 -26.61 -0.15 -1.49 16 17 C 0.15 1.50 2.61 -67.85 -0.18 1.32 16 18 H 0.10 1.34 7.58 -51.93 -0.39 0.95 16 19 N -0.72 -4.67 5.08 -53.73 -0.27 -4.94 16 20 C 0.50 4.10 6.90 -10.98 -0.08 4.02 16 21 O -0.51 -6.91 16.27 5.56 0.09 -6.82 16 22 C 0.10 0.51 4.17 -68.21 -0.28 0.23 16 23 H 0.12 0.16 8.14 -51.93 -0.42 -0.26 16 24 C 0.10 0.39 7.70 -3.16 -0.02 0.37 16 25 N -0.74 -4.93 6.37 -64.70 -0.41 -5.35 16 26 C 0.71 7.47 8.92 -88.40 -0.79 6.69 16 27 O -0.58 -8.84 18.05 5.28 0.10 -8.74 16 28 N -0.71 -5.74 5.63 -59.33 -0.33 -6.07 16 29 C 0.05 0.53 4.93 -3.83 -0.02 0.52 16 30 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 31 H 0.39 9.09 7.90 -40.82 -0.32 8.77 16 32 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 33 H 0.09 1.29 7.98 -51.93 -0.41 0.88 16 34 H 0.11 2.00 5.80 -51.93 -0.30 1.70 16 35 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.40 1.18 8.60 -40.82 -0.35 0.83 16 41 H 0.10 0.05 8.14 -51.93 -0.42 -0.37 16 42 H 0.09 0.34 7.72 -51.93 -0.40 -0.06 16 43 H 0.43 2.18 8.96 -40.82 -0.37 1.81 16 44 H 0.43 3.25 8.96 -40.82 -0.37 2.88 16 45 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.08 0.75 8.01 -51.93 -0.42 0.34 16 LS Contribution 379.27 15.07 5.72 5.72 Total: -1.00 -37.42 379.27 -9.13 -46.55 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -6.65 Total: 10.92 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: -2.05 Total: 13.68 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: -1.39 Total: -62.15 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: 0.26 Total: -30.37 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.42 -9.13 -46.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665013134.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.250 kcal (2) G-P(sol) polarization free energy of solvation -37.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds