Wall clock time and date at job start Tue Mar 31 2020 22:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.46986 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47457 * 299.99915 * 3 2 1 6 6 H 1.48501 * 109.47104 * 59.99987 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.46846 * 110.99738 * 66.04780 * 13 12 10 15 15 C 1.53044 * 109.51968 * 185.83487 * 14 13 12 16 16 C 1.53109 * 109.28150 * 300.81833 * 15 14 13 17 17 C 1.53126 * 109.16214 * 57.65538 * 16 15 14 18 18 H 1.08999 * 109.49855 * 62.28038 * 17 16 15 19 19 N 1.46498 * 109.50415 * 182.40513 * 17 16 15 20 20 C 1.34775 * 119.99761 * 274.99713 * 19 17 16 21 21 O 1.21279 * 120.00161 * 0.02562 * 20 19 17 22 22 C 1.50704 * 119.99816 * 180.02562 * 20 19 17 23 23 H 1.09000 * 110.48771 * 321.24611 * 22 20 19 24 24 C 1.54096 * 110.55061 * 84.10307 * 22 20 19 25 25 N 1.47059 * 103.86341 * 118.59455 * 24 22 20 26 26 C 1.33946 * 109.17638 * 0.02562 * 25 24 22 27 27 O 1.21593 * 123.04244 * 179.97438 * 26 25 24 28 28 N 1.33952 * 113.91739 * 359.97438 * 26 25 24 29 29 C 1.46854 * 110.99940 * 190.25481 * 13 12 10 30 30 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 33 33 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 34 34 H 1.08999 * 109.46435 * 305.84790 * 14 13 12 35 35 H 1.09001 * 109.46401 * 65.83402 * 14 13 12 36 36 H 1.09001 * 109.50195 * 60.76714 * 15 14 13 37 37 H 1.09007 * 109.50114 * 180.87863 * 15 14 13 38 38 H 1.08999 * 109.52964 * 177.55910 * 16 15 14 39 39 H 1.09003 * 109.52573 * 297.69192 * 16 15 14 40 40 H 0.96997 * 120.00006 * 95.00223 * 19 17 16 41 41 H 1.09001 * 110.54857 * 237.18681 * 24 22 20 42 42 H 1.09000 * 110.55021 * 0.02562 * 24 22 20 43 43 H 0.96998 * 125.40909 * 180.02562 * 25 24 22 44 44 H 0.96999 * 125.40799 * 180.02562 * 28 26 25 45 45 H 1.09005 * 109.46009 * 294.17618 * 29 13 12 46 46 H 1.08998 * 109.46194 * 54.14497 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8892 2.3965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 2.9636 -6.0182 1.2513 15 6 4.0439 -7.0982 1.1576 16 6 3.3818 -8.4545 0.9000 17 6 2.5522 -8.3730 -0.3846 18 1 3.2081 -8.1581 -1.2282 19 7 1.8692 -9.6496 -0.6076 20 6 2.5085 -10.6547 -1.2382 21 8 3.6493 -10.5024 -1.6206 22 6 1.8057 -11.9678 -1.4682 23 1 1.1942 -12.2296 -0.6047 24 6 0.9453 -11.9045 -2.7450 25 7 1.5262 -12.9397 -3.6131 26 6 2.5506 -13.5231 -2.9772 27 8 3.2126 -14.4174 -3.4675 28 7 2.7798 -13.0322 -1.7521 29 6 1.5153 -7.2560 -0.2463 30 1 -0.4850 0.8401 -0.0004 31 1 0.3535 -2.3906 0.0002 32 1 0.6170 -4.9209 0.8886 33 1 0.6176 -4.9205 -0.8913 34 1 3.4328 -5.0490 1.4205 35 1 2.2928 -6.2466 2.0795 36 1 4.7233 -6.8633 0.3383 37 1 4.6014 -7.1374 2.0935 38 1 4.1499 -9.2199 0.7894 39 1 2.7328 -8.7082 1.7382 40 1 0.9569 -9.7716 -0.3016 41 1 -0.0952 -12.1361 -2.5171 42 1 1.0267 -10.9235 -3.2130 43 1 1.2168 -13.1643 -4.5045 44 1 3.4776 -13.3312 -1.1483 45 1 0.8512 -7.4784 0.5891 46 1 0.9324 -7.1858 -1.1646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665013134.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:36 Heat of formation + Delta-G solvation = -112.309716 kcal Electronic energy + Delta-G solvation = -29283.056297 eV Core-core repulsion = 25013.569148 eV Total energy + Delta-G solvation = -4269.487149 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.35060 -40.96131 -40.21339 -39.00093 -37.35460 -36.13695 -35.60105 -34.00982 -33.83680 -33.17461 -31.35793 -29.63697 -28.84033 -26.48942 -25.26135 -24.04041 -23.59769 -22.82015 -21.61613 -21.08578 -20.80779 -19.84450 -19.10460 -18.59397 -17.69828 -17.52930 -17.20490 -16.75776 -16.51729 -16.26179 -16.22309 -16.05519 -15.71535 -15.45798 -15.26235 -15.06858 -14.89307 -14.75246 -14.52131 -14.32659 -13.88276 -13.83415 -13.48657 -13.41668 -13.19137 -12.99253 -12.65547 -12.38702 -12.34210 -12.12498 -11.89868 -11.80144 -11.58989 -11.55604 -11.43123 -11.28770 -10.55438 -10.23517 -10.10238 -9.96524 -9.81411 -9.15149 -8.44923 -5.92556 1.36940 1.40282 1.42518 1.55853 1.67132 1.95933 2.09568 2.14779 2.31079 2.86541 3.09227 3.22586 3.34226 3.41552 3.58050 3.78695 3.89276 4.03016 4.06427 4.20582 4.34517 4.37949 4.39757 4.47700 4.58018 4.63127 4.66149 4.69396 4.75426 4.76584 4.93343 5.03059 5.07916 5.26974 5.36490 5.43136 5.45998 5.90817 5.92178 6.11488 6.20598 6.27693 6.29725 6.56265 6.64236 7.16544 7.22861 7.51748 7.60728 8.17383 8.72565 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027019 B = 0.001871 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.057253 B =14962.294953 C =15395.153578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.013 4.013 3 Si 0.989 3.011 4 H -0.276 1.276 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.329 4.329 8 H 0.076 0.924 9 N -0.575 5.575 10 C 0.439 3.561 11 O -0.616 6.616 12 C 0.062 3.938 13 N -0.539 5.539 14 C 0.055 3.945 15 C -0.107 4.107 16 C -0.117 4.117 17 C 0.155 3.845 18 H 0.061 0.939 19 N -0.696 5.696 20 C 0.501 3.499 21 O -0.575 6.575 22 C 0.110 3.890 23 H 0.168 0.832 24 C 0.103 3.897 25 N -0.731 5.731 26 C 0.693 3.307 27 O -0.642 6.642 28 N -0.716 5.716 29 C 0.056 3.944 30 H 0.277 0.723 31 H 0.397 0.603 32 H 0.075 0.925 33 H 0.114 0.886 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.044 0.956 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.086 0.914 40 H 0.424 0.576 41 H 0.146 0.854 42 H 0.090 0.910 43 H 0.439 0.561 44 H 0.434 0.566 45 H 0.068 0.932 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.219 -23.744 1.990 25.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.813 3.187 4 H -0.201 1.201 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.459 4.459 8 H 0.094 0.906 9 N -0.213 5.213 10 C 0.227 3.773 11 O -0.502 6.502 12 C -0.068 4.068 13 N -0.264 5.264 14 C -0.073 4.073 15 C -0.146 4.146 16 C -0.156 4.156 17 C 0.050 3.950 18 H 0.079 0.921 19 N -0.350 5.350 20 C 0.286 3.714 21 O -0.453 6.453 22 C 0.000 4.000 23 H 0.185 0.815 24 C -0.021 4.021 25 N -0.394 5.394 26 C 0.391 3.609 27 O -0.524 6.524 28 N -0.376 5.376 29 C -0.072 4.072 30 H 0.086 0.914 31 H 0.231 0.769 32 H 0.092 0.908 33 H 0.132 0.868 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.262 0.738 41 H 0.164 0.836 42 H 0.108 0.892 43 H 0.283 0.717 44 H 0.276 0.724 45 H 0.086 0.914 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.121 -23.822 1.099 24.888 hybrid contribution -0.279 1.005 0.519 1.165 sum -7.400 -22.817 1.618 24.042 Atomic orbital electron populations 1.69666 1.06648 1.29096 1.50668 1.25964 0.96539 1.02201 0.96544 0.84923 0.77992 0.77465 0.78281 1.20068 1.19733 1.19614 1.19644 0.92576 0.84102 1.49545 0.90586 1.41929 1.09314 1.04632 1.65428 1.20902 0.88338 0.86106 0.81981 1.90486 1.15924 1.87792 1.55991 1.21692 0.93320 0.87933 1.03899 1.61256 1.26014 1.02472 1.36675 1.22149 0.95844 0.99955 0.89310 1.21444 0.97434 0.93942 1.01773 1.21867 0.99476 0.96467 0.97799 1.20673 0.93947 0.82617 0.97807 0.92081 1.45702 1.18568 1.12089 1.58602 1.21355 0.86643 0.86470 0.76945 1.90795 1.20363 1.82553 1.51546 1.22210 0.90170 0.84489 1.03127 0.81466 1.22629 0.99375 0.93106 0.87014 1.45077 1.34109 1.39771 1.20450 1.16229 0.81289 0.81471 0.81888 1.90962 1.54982 1.35717 1.70715 1.44885 1.37401 1.38189 1.17167 1.22298 0.94769 0.87098 1.03050 0.91380 0.76933 0.90765 0.86773 0.92346 0.93732 0.93684 0.90280 0.92540 0.89544 0.73755 0.83633 0.89190 0.71736 0.72408 0.91365 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.47 13.05 21.66 0.28 -48.19 16 2 C -0.01 -0.68 5.50 84.92 0.47 -0.21 16 3 Si 0.99 42.55 29.55 68.60 2.03 44.58 16 4 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 7 C -0.33 -18.36 9.68 84.04 0.81 -17.54 16 8 H 0.08 4.58 7.16 -2.91 -0.02 4.56 16 9 N -0.58 -28.47 5.29 -306.98 -1.62 -30.09 16 10 C 0.44 19.99 7.46 87.66 0.65 20.64 16 11 O -0.62 -33.28 13.92 -3.07 -0.04 -33.32 16 12 C 0.06 1.92 5.45 85.56 0.47 2.38 16 13 N -0.54 -15.42 4.39 -900.89 -3.96 -19.38 16 14 C 0.06 1.62 5.11 86.33 0.44 2.06 16 15 C -0.11 -2.74 6.09 30.65 0.19 -2.55 16 16 C -0.12 -2.24 5.58 30.67 0.17 -2.07 16 17 C 0.16 2.80 2.61 45.05 0.12 2.92 16 18 H 0.06 1.64 7.58 -2.39 -0.02 1.62 16 19 N -0.70 -6.42 5.08 -442.28 -2.25 -8.66 16 20 C 0.50 6.96 6.90 87.66 0.60 7.57 16 21 O -0.57 -15.35 16.27 -3.03 -0.05 -15.40 16 22 C 0.11 0.68 4.17 44.51 0.19 0.87 16 23 H 0.17 -0.57 8.14 -2.39 -0.02 -0.59 16 24 C 0.10 0.35 7.70 86.64 0.67 1.01 16 25 N -0.73 -8.36 6.37 -477.33 -3.04 -11.40 16 26 C 0.69 14.30 8.92 179.57 1.60 15.90 16 27 O -0.64 -20.15 18.05 -4.01 -0.07 -20.22 16 28 N -0.72 -10.50 5.63 -460.34 -2.59 -13.09 16 29 C 0.06 0.96 4.93 86.32 0.43 1.39 16 30 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 31 H 0.40 18.42 7.90 -92.71 -0.73 17.69 16 32 H 0.07 1.93 8.12 -2.39 -0.02 1.91 16 33 H 0.11 2.96 7.98 -2.39 -0.02 2.94 16 34 H 0.06 2.29 5.80 -2.39 -0.01 2.28 16 35 H 0.04 1.09 8.14 -2.39 -0.02 1.08 16 36 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.42 0.03 8.60 -92.71 -0.80 -0.77 16 41 H 0.15 -0.79 8.14 -2.39 -0.02 -0.81 16 42 H 0.09 0.36 7.72 -2.39 -0.02 0.34 16 43 H 0.44 3.76 8.96 -92.71 -0.83 2.93 16 44 H 0.43 6.27 8.96 -92.71 -0.83 5.44 16 45 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 46 H 0.09 1.38 8.01 -2.39 -0.02 1.37 16 Total: -1.00 -89.34 379.27 -6.64 -95.98 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: -2.13 Total: 26.81 kcal Atomic # 6 Polarization: 25.57 SS G_CDS: 6.80 Total: 32.37 kcal Atomic # 7 Polarization: -117.63 SS G_CDS: -13.18 Total: -130.81 kcal Atomic # 8 Polarization: -68.77 SS G_CDS: -0.16 Total: -68.93 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -89.34 -6.64 -95.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665013134.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.325 kcal (2) G-P(sol) polarization free energy of solvation -89.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds