Wall clock time and date at job start Tue Mar 31 2020 22:47:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31408 * 1
3 3 Si 1.86799 * 120.00131 * 2 1
4 4 H 1.48499 * 109.47298 * 180.02562 * 3 2 1
5 5 H 1.48510 * 109.46877 * 299.99952 * 3 2 1
6 6 H 1.48492 * 109.47338 * 59.99900 * 3 2 1
7 7 C 1.38955 * 119.99980 * 179.97438 * 2 1 3
8 8 H 1.07997 * 119.99623 * 179.97438 * 7 2 1
9 9 N 1.37101 * 119.99634 * 0.02562 * 7 2 1
10 10 C 1.34782 * 119.99665 * 179.97438 * 9 7 2
11 11 O 1.21292 * 119.99728 * 359.97438 * 10 9 7
12 12 C 1.50693 * 119.99859 * 179.97438 * 10 9 7
13 13 N 1.46905 * 109.47140 * 179.97438 * 12 10 9
14 14 C 1.46846 * 110.99593 * 65.79118 * 13 12 10
15 15 C 1.53041 * 109.52246 * 185.84062 * 14 13 12
16 16 C 1.53114 * 109.27781 * 300.82090 * 15 14 13
17 17 C 1.53119 * 109.16290 * 57.65039 * 16 15 14
18 18 H 1.09003 * 109.53130 * 62.30720 * 17 16 15
19 19 N 1.46497 * 109.50620 * 182.40357 * 17 16 15
20 20 C 1.34779 * 120.00184 * 274.80888 * 19 17 16
21 21 O 1.21287 * 119.99885 * 359.97438 * 20 19 17
22 22 C 1.50700 * 120.00250 * 180.02562 * 20 19 17
23 23 H 1.09001 * 110.59987 * 38.67194 * 22 20 19
24 24 C 1.54108 * 110.65651 * 275.95925 * 22 20 19
25 25 N 1.47054 * 103.86056 * 241.72445 * 24 22 20
26 26 C 1.33954 * 109.17982 * 359.75326 * 25 24 22
27 27 O 1.21578 * 123.04306 * 179.97438 * 26 25 24
28 28 N 1.33953 * 113.91376 * 0.02562 * 26 25 24
29 29 C 1.46835 * 111.00067 * 190.00110 * 13 12 10
30 30 H 0.97000 * 120.00215 * 0.02562 * 1 2 3
31 31 H 0.96990 * 120.00199 * 359.97438 * 9 7 2
32 32 H 1.09005 * 109.47115 * 60.00342 * 12 10 9
33 33 H 1.08998 * 109.47634 * 300.00104 * 12 10 9
34 34 H 1.09009 * 109.46488 * 305.85647 * 14 13 12
35 35 H 1.09000 * 109.46371 * 65.82521 * 14 13 12
36 36 H 1.08997 * 109.50574 * 60.76547 * 15 14 13
37 37 H 1.08998 * 109.49894 * 180.84335 * 15 14 13
38 38 H 1.09006 * 109.52374 * 297.75338 * 16 15 14
39 39 H 1.09002 * 109.52372 * 177.55963 * 16 15 14
40 40 H 0.96998 * 120.00186 * 94.80993 * 19 17 16
41 41 H 1.09006 * 110.75524 * 123.03081 * 24 22 20
42 42 H 1.08997 * 110.46642 * 0.27712 * 24 22 20
43 43 H 0.96994 * 125.41128 * 179.76196 * 25 24 22
44 44 H 0.97001 * 125.40551 * 179.97438 * 28 26 25
45 45 H 1.09004 * 109.46692 * 54.14526 * 29 13 12
46 46 H 1.09007 * 109.46340 * 294.17685 * 29 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2481 1.6177 0.0000
4 1 3.7081 1.3464 -0.0006
5 1 1.8893 2.3964 -1.2126
6 1 1.8894 2.3964 1.2124
7 6 2.0089 -1.2034 0.0005
8 1 3.0888 -1.2033 0.0001
9 7 1.3233 -2.3907 0.0005
10 6 1.9972 -3.5579 0.0005
11 8 3.2101 -3.5579 0.0001
12 6 1.2437 -4.8629 0.0011
13 7 2.1982 -5.9796 0.0004
14 6 2.9684 -6.0142 1.2502
15 6 4.0483 -7.0945 1.1557
16 6 3.3850 -8.4517 0.9053
17 6 2.5502 -8.3743 -0.3760
18 1 3.2021 -8.1627 -1.2235
19 7 1.8662 -9.6517 -0.5920
20 6 2.5015 -10.6576 -1.2254
21 8 3.6392 -10.5051 -1.6169
22 6 1.7977 -11.9714 -1.4482
23 1 0.7499 -11.8074 -1.6997
24 6 1.9177 -12.8705 -0.2023
25 7 2.6507 -14.0493 -0.6879
26 6 2.9195 -13.8944 -1.9910
27 8 3.5196 -14.7235 -2.6472
28 7 2.4681 -12.7429 -2.5054
29 6 1.5139 -7.2568 -0.2372
30 1 -0.4850 0.8400 -0.0004
31 1 0.3534 -2.3906 0.0005
32 1 0.6167 -4.9209 -0.8887
33 1 0.6173 -4.9205 0.8913
34 1 3.4383 -5.0444 1.4143
35 1 2.3010 -6.2396 2.0820
36 1 4.7243 -6.8625 0.3328
37 1 4.6100 -7.1301 2.0891
38 1 2.7386 -8.7020 1.7465
39 1 4.1528 -9.2174 0.7941
40 1 0.9562 -9.7735 -0.2793
41 1 0.9318 -13.1571 0.1637
42 1 2.4829 -12.3641 0.5801
43 1 2.8999 -14.8170 -0.1501
44 1 2.5707 -12.4610 -3.4279
45 1 0.9272 -7.1896 -1.1534
46 1 0.8532 -7.4764 0.6017
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001665013135.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:47:40
Heat of formation + Delta-G solvation = -76.693480 kcal
Electronic energy + Delta-G solvation = -29277.444966 eV
Core-core repulsion = 25009.502253 eV
Total energy + Delta-G solvation = -4267.942713 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 339.174 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-41.75067 -40.04880 -38.94230 -37.63751 -36.56671 -34.99395 -33.89643 -33.46097
-32.76050 -31.24143 -30.57748 -28.92117 -27.49278 -24.78757 -24.64170 -22.92752
-22.72309 -22.20146 -20.88482 -20.04825 -19.23075 -18.42331 -18.01695 -17.90144
-16.83040 -16.43798 -16.15055 -15.93683 -15.50449 -15.14993 -15.00046 -14.84215
-14.61853 -14.38984 -14.17924 -14.00028 -13.87844 -13.58917 -13.48340 -13.33192
-13.24512 -12.76961 -12.52250 -12.13392 -11.58515 -11.50972 -11.40165 -11.11831
-10.91923 -10.77568 -10.67517 -10.61009 -10.42696 -10.35643 -10.25384 -9.84134
-9.51020 -9.38237 -9.33245 -8.50102 -8.02448 -7.92266 -6.45126 -3.85769
1.99808 2.30011 2.53368 2.87147 3.14031 3.25123 3.32220 3.51244
3.70646 3.85411 3.91656 4.12333 4.22692 4.26076 4.63940 4.66659
4.70664 4.87451 4.98766 5.03043 5.10499 5.20444 5.22806 5.28487
5.48951 5.53857 5.63741 5.72790 5.83647 5.87860 5.98060 6.01883
6.11523 6.23320 6.40851 6.49806 6.53793 6.68610 6.90100 7.05946
7.20130 7.31285 7.52606 7.77174 8.03296 8.20121 8.58127 9.15117
9.50796 10.02324 10.72631
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.034516 B = 0.001809 C = 0.001791
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 811.016745 B =15478.254006 C =15633.429805
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.902 5.902
2 C 0.022 3.978
3 Si 0.929 3.071
4 H -0.268 1.268
5 H -0.282 1.282
6 H -0.282 1.282
7 C -0.298 4.298
8 H 0.104 0.896
9 N -0.564 5.564
10 C 0.443 3.557
11 O -0.576 6.576
12 C 0.048 3.952
13 N -0.511 5.511
14 C 0.050 3.950
15 C -0.111 4.111
16 C -0.128 4.128
17 C 0.148 3.852
18 H 0.101 0.899
19 N -0.719 5.719
20 C 0.501 3.499
21 O -0.514 6.514
22 C 0.103 3.897
23 H 0.117 0.883
24 C 0.105 3.895
25 N -0.739 5.739
26 C 0.706 3.294
27 O -0.582 6.582
28 N -0.714 5.714
29 C 0.051 3.949
30 H 0.271 0.729
31 H 0.392 0.608
32 H 0.089 0.911
33 H 0.048 0.952
34 H 0.107 0.893
35 H 0.023 0.977
36 H 0.076 0.924
37 H 0.068 0.932
38 H 0.059 0.941
39 H 0.065 0.935
40 H 0.400 0.600
41 H 0.097 0.903
42 H 0.087 0.913
43 H 0.433 0.567
44 H 0.435 0.565
45 H 0.079 0.921
46 H 0.035 0.965
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.021 -23.650 3.442 24.421
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.543 5.543
2 C -0.180 4.180
3 Si 0.756 3.244
4 H -0.192 1.192
5 H -0.208 1.208
6 H -0.208 1.208
7 C -0.427 4.427
8 H 0.122 0.878
9 N -0.201 5.201
10 C 0.228 3.772
11 O -0.460 6.460
12 C -0.083 4.083
13 N -0.236 5.236
14 C -0.078 4.078
15 C -0.150 4.150
16 C -0.166 4.166
17 C 0.044 3.956
18 H 0.119 0.881
19 N -0.371 5.371
20 C 0.284 3.716
21 O -0.388 6.388
22 C -0.007 4.007
23 H 0.135 0.865
24 C -0.021 4.021
25 N -0.403 5.403
26 C 0.405 3.595
27 O -0.460 6.460
28 N -0.377 5.377
29 C -0.078 4.078
30 H 0.081 0.919
31 H 0.225 0.775
32 H 0.107 0.893
33 H 0.066 0.934
34 H 0.125 0.875
35 H 0.041 0.959
36 H 0.094 0.906
37 H 0.086 0.914
38 H 0.078 0.922
39 H 0.084 0.916
40 H 0.234 0.766
41 H 0.115 0.885
42 H 0.105 0.895
43 H 0.275 0.725
44 H 0.278 0.722
45 H 0.097 0.903
46 H 0.053 0.947
Dipole moment (debyes) X Y Z Total
from point charges -2.853 -23.709 2.420 24.002
hybrid contribution -1.349 0.718 0.762 1.708
sum -4.202 -22.991 3.182 23.587
Atomic orbital electron populations
1.69614 1.05941 1.28066 1.50711 1.25262 0.95637 0.99739 0.97336
0.85804 0.79741 0.81134 0.77699 1.19199 1.20752 1.20789 1.19751
0.93402 0.82156 1.47426 0.87818 1.41870 1.09178 1.04596 1.64426
1.19700 0.88425 0.84505 0.84550 1.90497 1.13643 1.86817 1.54999
1.21834 0.93809 0.91100 1.01551 1.61374 1.24896 1.00654 1.36667
1.22331 0.95119 1.01931 0.88375 1.21505 0.98153 0.92900 1.02399
1.21970 0.99331 0.98648 0.96687 1.21020 0.94111 0.80932 0.99576
0.88143 1.46020 1.18093 1.13692 1.59329 1.20708 0.87211 0.85290
0.78401 1.90801 1.17485 1.81599 1.48932 1.21860 0.98455 0.90899
0.89536 0.86515 1.22241 0.98828 0.85903 0.95112 1.45045 1.62381
1.22766 1.10085 1.15858 0.78925 0.82374 0.82367 1.91015 1.46361
1.45810 1.62777 1.44835 1.61842 1.18789 1.12206 1.22247 0.94801
0.89710 1.01035 0.91928 0.77522 0.89292 0.93378 0.87519 0.95928
0.90570 0.91368 0.92234 0.91611 0.76610 0.88517 0.89489 0.72504
0.72207 0.90268 0.94718
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -23.99 13.05 55.50 0.72 -23.27 16
2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16
3 Si 0.93 20.69 29.55 -169.99 -5.02 15.67 16
4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16
5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16
6 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16
7 C -0.30 -8.09 9.68 -14.93 -0.14 -8.24 16
8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16
9 N -0.56 -13.77 5.29 -10.96 -0.06 -13.83 16
10 C 0.44 9.96 7.46 -10.99 -0.08 9.88 16
11 O -0.58 -14.90 13.90 5.55 0.08 -14.83 16
12 C 0.05 0.79 5.45 -4.98 -0.03 0.77 16
13 N -0.51 -7.73 4.40 -236.11 -1.04 -8.77 16
14 C 0.05 0.74 5.11 -3.83 -0.02 0.72 16
15 C -0.11 -1.41 6.09 -26.65 -0.16 -1.57 16
16 C -0.13 -1.32 5.58 -26.61 -0.15 -1.47 16
17 C 0.15 1.50 2.62 -67.85 -0.18 1.32 16
18 H 0.10 1.35 7.58 -51.93 -0.39 0.95 16
19 N -0.72 -4.67 5.08 -53.73 -0.27 -4.95 16
20 C 0.50 4.10 6.91 -10.98 -0.08 4.03 16
21 O -0.51 -6.91 16.26 5.55 0.09 -6.82 16
22 C 0.10 0.51 4.16 -68.20 -0.28 0.23 16
23 H 0.12 0.18 8.14 -51.93 -0.42 -0.25 16
24 C 0.11 0.36 7.70 -3.16 -0.02 0.34 16
25 N -0.74 -4.74 6.37 -64.70 -0.41 -5.16 16
26 C 0.71 7.41 8.92 -88.39 -0.79 6.62 16
27 O -0.58 -8.79 18.05 5.30 0.10 -8.70 16
28 N -0.71 -5.79 5.63 -59.33 -0.33 -6.13 16
29 C 0.05 0.54 4.93 -3.84 -0.02 0.52 16
30 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16
31 H 0.39 9.11 7.90 -40.82 -0.32 8.79 16
32 H 0.09 1.30 7.99 -51.93 -0.41 0.89 16
33 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16
34 H 0.11 2.01 5.78 -51.92 -0.30 1.71 16
35 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16
36 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16
37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16
39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
40 H 0.40 1.18 8.60 -40.82 -0.35 0.83 16
41 H 0.10 0.03 8.14 -51.93 -0.42 -0.40 16
42 H 0.09 0.30 7.72 -51.93 -0.40 -0.11 16
43 H 0.43 2.03 8.96 -40.82 -0.37 1.67 16
44 H 0.44 3.36 8.96 -40.82 -0.37 2.99 16
45 H 0.08 0.77 8.02 -51.93 -0.42 0.36 16
46 H 0.03 0.31 8.14 -51.92 -0.42 -0.11 16
LS Contribution 379.24 15.07 5.72 5.72
Total: -1.00 -37.43 379.24 -9.13 -46.56
By element:
Atomic # 1 Polarization: 17.51 SS G_CDS: -6.65 Total: 10.87 kcal
Atomic # 6 Polarization: 15.68 SS G_CDS: -2.05 Total: 13.63 kcal
Atomic # 7 Polarization: -60.70 SS G_CDS: -1.39 Total: -62.09 kcal
Atomic # 8 Polarization: -30.61 SS G_CDS: 0.26 Total: -30.34 kcal
Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal
Total LS contribution 5.72 Total: 5.72 kcal
Total: -37.43 -9.13 -46.56 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001665013135.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.137 kcal
(2) G-P(sol) polarization free energy of solvation -37.425 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.562 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.556 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.693 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds