Wall clock time and date at job start Tue Mar 31 2020 22:47:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31408 * 1
3 3 Si 1.86799 * 120.00131 * 2 1
4 4 H 1.48499 * 109.47298 * 180.02562 * 3 2 1
5 5 H 1.48510 * 109.46877 * 299.99952 * 3 2 1
6 6 H 1.48492 * 109.47338 * 59.99900 * 3 2 1
7 7 C 1.38955 * 119.99980 * 179.97438 * 2 1 3
8 8 H 1.07997 * 119.99623 * 179.97438 * 7 2 1
9 9 N 1.37101 * 119.99634 * 0.02562 * 7 2 1
10 10 C 1.34782 * 119.99665 * 179.97438 * 9 7 2
11 11 O 1.21292 * 119.99728 * 359.97438 * 10 9 7
12 12 C 1.50693 * 119.99859 * 179.97438 * 10 9 7
13 13 N 1.46905 * 109.47140 * 179.97438 * 12 10 9
14 14 C 1.46846 * 110.99593 * 65.79118 * 13 12 10
15 15 C 1.53041 * 109.52246 * 185.84062 * 14 13 12
16 16 C 1.53114 * 109.27781 * 300.82090 * 15 14 13
17 17 C 1.53119 * 109.16290 * 57.65039 * 16 15 14
18 18 H 1.09003 * 109.53130 * 62.30720 * 17 16 15
19 19 N 1.46497 * 109.50620 * 182.40357 * 17 16 15
20 20 C 1.34779 * 120.00184 * 274.80888 * 19 17 16
21 21 O 1.21287 * 119.99885 * 359.97438 * 20 19 17
22 22 C 1.50700 * 120.00250 * 180.02562 * 20 19 17
23 23 H 1.09001 * 110.59987 * 38.67194 * 22 20 19
24 24 C 1.54108 * 110.65651 * 275.95925 * 22 20 19
25 25 N 1.47054 * 103.86056 * 241.72445 * 24 22 20
26 26 C 1.33954 * 109.17982 * 359.75326 * 25 24 22
27 27 O 1.21578 * 123.04306 * 179.97438 * 26 25 24
28 28 N 1.33953 * 113.91376 * 0.02562 * 26 25 24
29 29 C 1.46835 * 111.00067 * 190.00110 * 13 12 10
30 30 H 0.97000 * 120.00215 * 0.02562 * 1 2 3
31 31 H 0.96990 * 120.00199 * 359.97438 * 9 7 2
32 32 H 1.09005 * 109.47115 * 60.00342 * 12 10 9
33 33 H 1.08998 * 109.47634 * 300.00104 * 12 10 9
34 34 H 1.09009 * 109.46488 * 305.85647 * 14 13 12
35 35 H 1.09000 * 109.46371 * 65.82521 * 14 13 12
36 36 H 1.08997 * 109.50574 * 60.76547 * 15 14 13
37 37 H 1.08998 * 109.49894 * 180.84335 * 15 14 13
38 38 H 1.09006 * 109.52374 * 297.75338 * 16 15 14
39 39 H 1.09002 * 109.52372 * 177.55963 * 16 15 14
40 40 H 0.96998 * 120.00186 * 94.80993 * 19 17 16
41 41 H 1.09006 * 110.75524 * 123.03081 * 24 22 20
42 42 H 1.08997 * 110.46642 * 0.27712 * 24 22 20
43 43 H 0.96994 * 125.41128 * 179.76196 * 25 24 22
44 44 H 0.97001 * 125.40551 * 179.97438 * 28 26 25
45 45 H 1.09004 * 109.46692 * 54.14526 * 29 13 12
46 46 H 1.09007 * 109.46340 * 294.17685 * 29 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2481 1.6177 0.0000
4 1 3.7081 1.3464 -0.0006
5 1 1.8893 2.3964 -1.2126
6 1 1.8894 2.3964 1.2124
7 6 2.0089 -1.2034 0.0005
8 1 3.0888 -1.2033 0.0001
9 7 1.3233 -2.3907 0.0005
10 6 1.9972 -3.5579 0.0005
11 8 3.2101 -3.5579 0.0001
12 6 1.2437 -4.8629 0.0011
13 7 2.1982 -5.9796 0.0004
14 6 2.9684 -6.0142 1.2502
15 6 4.0483 -7.0945 1.1557
16 6 3.3850 -8.4517 0.9053
17 6 2.5502 -8.3743 -0.3760
18 1 3.2021 -8.1627 -1.2235
19 7 1.8662 -9.6517 -0.5920
20 6 2.5015 -10.6576 -1.2254
21 8 3.6392 -10.5051 -1.6169
22 6 1.7977 -11.9714 -1.4482
23 1 0.7499 -11.8074 -1.6997
24 6 1.9177 -12.8705 -0.2023
25 7 2.6507 -14.0493 -0.6879
26 6 2.9195 -13.8944 -1.9910
27 8 3.5196 -14.7235 -2.6472
28 7 2.4681 -12.7429 -2.5054
29 6 1.5139 -7.2568 -0.2372
30 1 -0.4850 0.8400 -0.0004
31 1 0.3534 -2.3906 0.0005
32 1 0.6167 -4.9209 -0.8887
33 1 0.6173 -4.9205 0.8913
34 1 3.4383 -5.0444 1.4143
35 1 2.3010 -6.2396 2.0820
36 1 4.7243 -6.8625 0.3328
37 1 4.6100 -7.1301 2.0891
38 1 2.7386 -8.7020 1.7465
39 1 4.1528 -9.2174 0.7941
40 1 0.9562 -9.7735 -0.2793
41 1 0.9318 -13.1571 0.1637
42 1 2.4829 -12.3641 0.5801
43 1 2.8999 -14.8170 -0.1501
44 1 2.5707 -12.4610 -3.4279
45 1 0.9272 -7.1896 -1.1534
46 1 0.8532 -7.4764 0.6017
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001665013135.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:47:39
Heat of formation + Delta-G solvation = -112.236178 kcal
Electronic energy + Delta-G solvation = -29278.986213 eV
Core-core repulsion = 25009.502253 eV
Total energy + Delta-G solvation = -4269.483960 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 339.174 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-42.35091 -40.96270 -40.21566 -39.00090 -37.35681 -36.13987 -35.60200 -34.01210
-33.82894 -33.17701 -31.35969 -29.63139 -28.85184 -26.48929 -25.24399 -24.05937
-23.59360 -22.81664 -21.59402 -21.09772 -20.82472 -19.84642 -19.09621 -18.59484
-17.70873 -17.53753 -17.19834 -16.69820 -16.51312 -16.35927 -16.24728 -15.97323
-15.71642 -15.49188 -15.27601 -15.08403 -14.87292 -14.72951 -14.46759 -14.36497
-13.92567 -13.80590 -13.49311 -13.41573 -13.18704 -12.99584 -12.66004 -12.38860
-12.33862 -12.12499 -11.89890 -11.79277 -11.59194 -11.55923 -11.43209 -11.28487
-10.55531 -10.23657 -10.09986 -9.96765 -9.81424 -9.15160 -8.45110 -5.92758
1.36867 1.39472 1.42472 1.55857 1.68410 1.95203 2.09235 2.14957
2.30993 2.86284 3.09617 3.22406 3.33919 3.41321 3.58091 3.78641
3.89444 4.02871 4.07203 4.20557 4.34445 4.37848 4.39752 4.47422
4.57655 4.63537 4.65990 4.69792 4.74895 4.76743 4.93581 5.03261
5.08235 5.27436 5.36934 5.42993 5.46052 5.90530 5.92007 6.11437
6.20551 6.27769 6.30034 6.56214 6.63975 7.16295 7.22807 7.51789
7.60419 8.17034 8.72405
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.034516 B = 0.001809 C = 0.001791
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 811.016745 B =15478.254006 C =15633.429805
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.920 5.920
2 C -0.013 4.013
3 Si 0.989 3.011
4 H -0.276 1.276
5 H -0.272 1.272
6 H -0.271 1.271
7 C -0.329 4.329
8 H 0.076 0.924
9 N -0.575 5.575
10 C 0.439 3.561
11 O -0.616 6.616
12 C 0.062 3.938
13 N -0.539 5.539
14 C 0.055 3.945
15 C -0.108 4.108
16 C -0.117 4.117
17 C 0.155 3.845
18 H 0.060 0.940
19 N -0.696 5.696
20 C 0.501 3.499
21 O -0.575 6.575
22 C 0.108 3.892
23 H 0.167 0.833
24 C 0.105 3.895
25 N -0.730 5.730
26 C 0.693 3.307
27 O -0.642 6.642
28 N -0.717 5.717
29 C 0.056 3.944
30 H 0.277 0.723
31 H 0.397 0.603
32 H 0.113 0.887
33 H 0.075 0.925
34 H 0.058 0.942
35 H 0.045 0.955
36 H 0.043 0.957
37 H 0.079 0.921
38 H 0.089 0.911
39 H 0.056 0.944
40 H 0.424 0.576
41 H 0.146 0.854
42 H 0.092 0.908
43 H 0.440 0.560
44 H 0.433 0.567
45 H 0.092 0.908
46 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.130 -24.797 4.882 26.548
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.561 5.561
2 C -0.212 4.212
3 Si 0.814 3.186
4 H -0.201 1.201
5 H -0.198 1.198
6 H -0.196 1.196
7 C -0.459 4.459
8 H 0.094 0.906
9 N -0.213 5.213
10 C 0.227 3.773
11 O -0.502 6.502
12 C -0.069 4.069
13 N -0.265 5.265
14 C -0.073 4.073
15 C -0.146 4.146
16 C -0.155 4.155
17 C 0.049 3.951
18 H 0.078 0.922
19 N -0.350 5.350
20 C 0.286 3.714
21 O -0.453 6.453
22 C -0.001 4.001
23 H 0.184 0.816
24 C -0.020 4.020
25 N -0.393 5.393
26 C 0.391 3.609
27 O -0.524 6.524
28 N -0.377 5.377
29 C -0.072 4.072
30 H 0.086 0.914
31 H 0.231 0.769
32 H 0.131 0.869
33 H 0.093 0.907
34 H 0.077 0.923
35 H 0.063 0.937
36 H 0.062 0.938
37 H 0.098 0.902
38 H 0.107 0.893
39 H 0.074 0.926
40 H 0.262 0.738
41 H 0.163 0.837
42 H 0.110 0.890
43 H 0.283 0.717
44 H 0.275 0.725
45 H 0.110 0.890
46 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -6.062 -24.852 3.920 25.880
hybrid contribution -0.345 1.069 0.336 1.173
sum -6.407 -23.783 4.256 24.996
Atomic orbital electron populations
1.69663 1.06668 1.29108 1.50644 1.25969 0.96532 1.02210 0.96519
0.84921 0.77994 0.77445 0.78284 1.20053 1.19758 1.19578 1.19651
0.92585 0.84096 1.49579 0.90565 1.41929 1.09310 1.04638 1.65414
1.20890 0.88338 0.86094 0.82000 1.90483 1.15906 1.87783 1.55995
1.21689 0.93341 0.87966 1.03858 1.61250 1.25776 1.02396 1.37035
1.22156 0.95808 1.00009 0.89304 1.21445 0.97419 0.93973 1.01782
1.21864 0.99414 0.96426 0.97811 1.20678 0.93891 0.82566 0.97938
0.92166 1.45701 1.18851 1.11864 1.58543 1.21349 0.86480 0.86391
0.77167 1.90797 1.20342 1.82742 1.51388 1.22208 0.99782 0.88716
0.89426 0.81613 1.22619 1.00952 0.84240 0.94151 1.45062 1.61790
1.23822 1.08668 1.16227 0.78754 0.82463 0.83418 1.90958 1.49035
1.47907 1.64484 1.44912 1.61517 1.18470 1.12845 1.22290 0.94802
0.87142 1.02984 0.91375 0.76947 0.86904 0.90725 0.92325 0.93659
0.93775 0.90213 0.89277 0.92558 0.73758 0.83680 0.88982 0.71702
0.72473 0.88952 0.91265
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -48.57 13.05 21.66 0.28 -48.29 16
2 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16
3 Si 0.99 42.60 29.55 68.60 2.03 44.62 16
4 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16
5 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16
6 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16
7 C -0.33 -18.41 9.68 84.04 0.81 -17.60 16
8 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16
9 N -0.58 -28.55 5.29 -306.98 -1.62 -30.17 16
10 C 0.44 20.05 7.46 87.65 0.65 20.71 16
11 O -0.62 -33.30 13.90 -3.07 -0.04 -33.34 16
12 C 0.06 1.93 5.45 85.55 0.47 2.40 16
13 N -0.54 -15.51 4.40 -900.92 -3.96 -19.48 16
14 C 0.05 1.60 5.11 86.33 0.44 2.04 16
15 C -0.11 -2.72 6.09 30.65 0.19 -2.54 16
16 C -0.12 -2.17 5.58 30.67 0.17 -2.00 16
17 C 0.16 2.80 2.62 45.04 0.12 2.92 16
18 H 0.06 1.63 7.58 -2.39 -0.02 1.61 16
19 N -0.70 -6.44 5.08 -442.28 -2.25 -8.69 16
20 C 0.50 6.99 6.91 87.66 0.61 7.60 16
21 O -0.57 -15.39 16.26 -3.05 -0.05 -15.44 16
22 C 0.11 0.68 4.16 44.52 0.19 0.87 16
23 H 0.17 -0.49 8.14 -2.39 -0.02 -0.51 16
24 C 0.10 0.27 7.70 86.65 0.67 0.94 16
25 N -0.73 -7.82 6.37 -477.32 -3.04 -10.86 16
26 C 0.69 14.16 8.92 179.57 1.60 15.76 16
27 O -0.64 -20.08 18.05 -3.96 -0.07 -20.16 16
28 N -0.72 -10.73 5.63 -460.34 -2.59 -13.32 16
29 C 0.06 0.98 4.93 86.33 0.43 1.40 16
30 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16
31 H 0.40 18.49 7.90 -92.72 -0.73 17.75 16
32 H 0.11 2.98 7.99 -2.38 -0.02 2.96 16
33 H 0.07 1.95 8.12 -2.39 -0.02 1.93 16
34 H 0.06 2.30 5.78 -2.38 -0.01 2.28 16
35 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16
36 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16
37 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16
38 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16
39 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16
40 H 0.42 0.04 8.60 -92.71 -0.80 -0.76 16
41 H 0.15 -0.89 8.14 -2.38 -0.02 -0.90 16
42 H 0.09 0.22 7.72 -2.39 -0.02 0.20 16
43 H 0.44 3.36 8.96 -92.71 -0.83 2.53 16
44 H 0.43 6.59 8.96 -92.71 -0.83 5.76 16
45 H 0.09 1.42 8.02 -2.38 -0.02 1.40 16
46 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16
Total: -1.00 -89.51 379.24 -6.64 -96.15
By element:
Atomic # 1 Polarization: 28.79 SS G_CDS: -2.13 Total: 26.66 kcal
Atomic # 6 Polarization: 25.50 SS G_CDS: 6.80 Total: 32.30 kcal
Atomic # 7 Polarization: -117.62 SS G_CDS: -13.18 Total: -130.80 kcal
Atomic # 8 Polarization: -68.77 SS G_CDS: -0.16 Total: -68.94 kcal
Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal
Total: -89.51 -6.64 -96.15 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001665013135.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -16.085 kcal
(2) G-P(sol) polarization free energy of solvation -89.509 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.594 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.642 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.151 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.236 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds