Wall clock time and date at job start Tue Mar 31 2020 22:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99744 * 2 1 4 4 H 1.48504 * 109.47015 * 269.99622 * 3 2 1 5 5 H 1.48498 * 109.47314 * 29.99473 * 3 2 1 6 6 H 1.48497 * 109.47428 * 149.99920 * 3 2 1 7 7 C 1.38809 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99609 * 0.02562 * 7 2 1 9 9 N 1.36931 * 120.00087 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00420 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47583 * 180.02562 * 10 9 7 12 12 C 1.38230 * 120.00101 * 89.99581 * 11 10 9 13 13 C 1.38229 * 120.00478 * 180.02562 * 12 11 10 14 14 C 1.38239 * 119.99526 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99967 * 179.97438 * 14 13 12 16 16 N 1.46501 * 109.47341 * 89.99740 * 15 14 13 17 17 C 1.34778 * 120.00606 * 179.97438 * 16 15 14 18 18 O 1.21283 * 119.99478 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00225 * 180.02562 * 17 16 15 20 20 C 1.52995 * 109.46908 * 179.97438 * 19 17 16 21 21 C 1.50706 * 109.47285 * 179.97438 * 20 19 17 22 22 C 1.38675 * 120.41529 * 89.99913 * 21 20 19 23 23 C 1.38631 * 118.41792 * 179.97438 * 22 21 20 24 24 C 1.38221 * 119.16077 * 0.25627 * 23 22 21 25 25 N 1.31860 * 120.76509 * 359.49797 * 24 23 22 26 26 C 1.31882 * 121.72556 * 0.49011 * 25 24 23 27 27 C 1.38231 * 120.00226 * 0.24733 * 14 13 12 28 28 C 1.38235 * 119.99562 * 270.02218 * 11 10 9 29 29 H 0.97002 * 120.00269 * 0.02562 * 1 2 3 30 30 H 0.97006 * 120.00331 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47225 * 59.99803 * 10 9 7 32 32 H 1.09003 * 109.46821 * 300.00312 * 10 9 7 33 33 H 1.08004 * 119.99948 * 0.02562 * 12 11 10 34 34 H 1.07993 * 120.00613 * 179.97438 * 13 12 11 35 35 H 1.08995 * 109.47247 * 329.99862 * 15 14 13 36 36 H 1.08998 * 109.47517 * 209.99629 * 15 14 13 37 37 H 0.97010 * 119.99594 * 359.97438 * 16 15 14 38 38 H 1.08995 * 109.47138 * 59.99940 * 19 17 16 39 39 H 1.09001 * 109.47238 * 299.99569 * 19 17 16 40 40 H 1.09008 * 109.47427 * 59.99859 * 20 19 17 41 41 H 1.08998 * 109.47562 * 299.99766 * 20 19 17 42 42 H 1.07998 * 120.79161 * 359.96013 * 22 21 20 43 43 H 1.08002 * 120.41548 * 179.97438 * 23 22 21 44 44 H 1.08002 * 119.62066 * 179.74470 * 24 23 22 45 45 H 1.07993 * 119.62126 * 179.75488 * 26 25 24 46 46 H 1.07999 * 120.00560 * 179.73197 * 27 14 13 47 47 H 1.07990 * 120.00388 * 359.97438 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4707 0.0000 11 6 5.5938 -2.1954 0.0000 12 6 6.2734 -2.0690 1.1971 13 6 7.6323 -1.8159 1.1972 14 6 8.3116 -1.6886 0.0000 15 6 9.7930 -1.4121 0.0000 16 7 10.5266 -2.6802 -0.0005 17 6 11.8744 -2.6792 -0.0011 18 8 12.4799 -1.6284 -0.0017 19 6 12.6288 -3.9837 -0.0022 20 6 14.1328 -3.7030 -0.0033 21 6 14.8874 -5.0075 -0.0038 22 6 15.2380 -5.6154 -1.1999 23 6 15.9322 -6.8144 -1.1519 24 6 16.2449 -7.3629 0.0777 25 7 15.8994 -6.7543 1.1952 26 6 15.2390 -5.6128 1.1877 27 6 7.6311 -1.8094 -1.1971 28 6 6.2732 -2.0686 -1.1972 29 1 -0.4850 0.8400 -0.0004 30 1 3.8647 -0.3620 -0.0004 31 1 3.8486 -3.0426 -0.8898 32 1 3.8492 -3.0421 0.8902 33 1 5.7425 -2.1680 2.1325 34 1 8.1631 -1.7167 2.1324 35 1 10.0560 -0.8406 0.8901 36 1 10.0559 -0.8400 -0.8898 37 1 10.0422 -3.5207 -0.0003 38 1 12.3655 -4.5550 -0.8923 39 1 12.3664 -4.5560 0.8877 40 1 14.3965 -3.1314 0.8866 41 1 14.3950 -3.1310 -0.8933 42 1 14.9762 -5.1656 -2.1462 43 1 16.2210 -7.3158 -2.0638 44 1 16.7819 -8.2988 0.1237 45 1 14.9697 -5.1457 2.1234 46 1 8.1610 -1.7056 -2.1324 47 1 5.7424 -2.1673 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666337387.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:12 Heat of formation + Delta-G solvation = 25.163041 kcal Electronic energy + Delta-G solvation = -26423.137491 eV Core-core repulsion = 22570.460871 eV Total energy + Delta-G solvation = -3852.676620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.75833 -40.10987 -39.24568 -35.83152 -35.00049 -34.49708 -32.57784 -32.21139 -30.95151 -30.89263 -30.22242 -27.51680 -25.56264 -24.19083 -24.05045 -22.66297 -22.21927 -21.92745 -20.75208 -20.52570 -17.87956 -17.78404 -17.46946 -16.98301 -16.48517 -16.04715 -15.66429 -15.37276 -15.31963 -14.90533 -14.64893 -14.46157 -14.09522 -13.91338 -13.70950 -13.56453 -13.50281 -13.38251 -13.03598 -12.83164 -12.70600 -12.47400 -12.23516 -12.07179 -12.04491 -11.56802 -11.52030 -10.99995 -10.84958 -10.68456 -10.37931 -10.23185 -10.17031 -9.90933 -9.64270 -9.44798 -9.40024 -8.96579 -8.86679 -8.62578 -7.29682 -5.81332 -3.17797 0.59333 0.78083 1.21964 1.46150 2.30363 2.91528 3.32756 3.35531 3.39646 3.43339 3.82099 3.96379 4.19985 4.29955 4.45225 4.45887 4.48471 4.52954 4.55883 4.69876 4.75522 4.80395 5.01739 5.03213 5.06915 5.18128 5.18222 5.25244 5.37484 5.46670 5.48548 5.56443 5.58594 5.64228 5.68477 5.69195 5.81466 6.00400 6.00653 6.07155 6.20947 6.32371 6.44677 6.46392 6.52874 6.92535 7.04035 7.16504 7.49157 7.87713 7.93365 8.37237 9.15613 9.87865 10.07522 11.36688 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028387 B = 0.001499 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.129731 B =18670.767467 C =19058.633607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.008 3.992 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.248 4.248 8 H 0.091 0.909 9 N -0.750 5.750 10 C 0.189 3.811 11 C -0.071 4.071 12 C -0.107 4.107 13 C -0.104 4.104 14 C -0.124 4.124 15 C 0.165 3.835 16 N -0.725 5.725 17 C 0.511 3.489 18 O -0.542 6.542 19 C -0.136 4.136 20 C -0.061 4.061 21 C -0.133 4.133 22 C -0.073 4.073 23 C -0.170 4.170 24 C 0.092 3.908 25 N -0.484 5.484 26 C 0.102 3.898 27 C -0.104 4.104 28 C -0.108 4.108 29 H 0.260 0.740 30 H 0.363 0.637 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.403 0.597 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.155 0.845 45 H 0.155 0.845 46 H 0.120 0.880 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.017 -13.140 -1.812 35.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.188 4.188 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.109 0.891 9 N -0.396 5.396 10 C 0.063 3.937 11 C -0.071 4.071 12 C -0.126 4.126 13 C -0.122 4.122 14 C -0.125 4.125 15 C 0.042 3.958 16 N -0.377 5.377 17 C 0.298 3.702 18 O -0.419 6.419 19 C -0.176 4.176 20 C -0.099 4.099 21 C -0.135 4.135 22 C -0.099 4.099 23 C -0.190 4.190 24 C -0.065 4.065 25 N -0.192 5.192 26 C -0.055 4.055 27 C -0.123 4.123 28 C -0.126 4.126 29 H 0.070 0.930 30 H 0.196 0.804 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.144 0.856 34 H 0.138 0.862 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.238 0.762 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.172 0.828 45 H 0.173 0.827 46 H 0.138 0.862 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 33.424 -12.836 -1.004 35.818 hybrid contribution -0.076 1.208 -0.881 1.497 sum 33.348 -11.627 -1.885 35.367 Atomic orbital electron populations 1.69699 1.05083 1.25921 1.57264 1.24650 0.95207 0.97192 1.01786 0.86566 0.79272 0.84952 0.77890 1.20999 1.21607 1.20283 1.19055 0.80373 0.94848 1.43494 0.89080 1.42682 1.03893 1.01798 1.91222 1.19673 0.84651 0.89819 0.99607 1.20450 0.97107 0.96692 0.92874 1.21171 0.93857 0.99231 0.98308 1.21018 0.94474 0.99586 0.97163 1.19712 0.94451 1.04470 0.93826 1.20160 0.87036 0.85634 1.02956 1.46174 1.06184 1.09915 1.75402 1.20665 0.82240 0.91445 0.75870 1.90727 1.68174 1.33564 1.49469 1.21661 0.95220 0.95732 1.04943 1.20269 0.91705 0.92881 1.05079 1.20938 1.00182 0.98119 0.94301 1.21566 0.95364 0.94587 0.98358 1.22183 1.00156 0.96923 0.99756 1.22803 0.96709 0.99166 0.87812 1.67713 1.10828 1.09168 1.31517 1.22747 0.93850 0.91234 0.97687 1.21017 0.94486 0.99619 0.97143 1.21173 0.93872 0.99290 0.98294 0.92973 0.80446 0.94498 0.94553 0.85606 0.86194 0.90710 0.90729 0.76250 0.88684 0.88548 0.89622 0.89797 0.84741 0.84701 0.82785 0.82738 0.86213 0.85586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.11 13.97 55.49 0.78 -28.34 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 22.17 27.73 -169.99 -4.71 17.46 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 7 C -0.25 -6.98 10.47 -15.06 -0.16 -7.14 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.75 -17.74 5.40 -61.08 -0.33 -18.07 16 10 C 0.19 3.57 6.38 -5.19 -0.03 3.54 16 11 C -0.07 -1.09 5.25 -104.63 -0.55 -1.64 16 12 C -0.11 -1.48 9.70 -39.59 -0.38 -1.87 16 13 C -0.10 -1.20 9.70 -39.58 -0.38 -1.59 16 14 C -0.12 -1.34 5.25 -104.63 -0.55 -1.89 16 15 C 0.16 1.57 5.80 -5.19 -0.03 1.54 16 16 N -0.72 -5.65 5.55 -61.48 -0.34 -5.99 16 17 C 0.51 4.39 7.83 -10.99 -0.09 4.30 16 18 O -0.54 -6.79 15.98 5.55 0.09 -6.70 16 19 C -0.14 -0.72 5.68 -27.89 -0.16 -0.87 16 20 C -0.06 -0.36 4.66 -27.88 -0.13 -0.49 16 21 C -0.13 -0.80 5.15 -104.48 -0.54 -1.34 16 22 C -0.07 -0.39 9.86 -39.28 -0.39 -0.77 16 23 C -0.17 -0.86 10.11 -39.44 -0.40 -1.26 16 24 C 0.09 0.58 11.18 -17.55 -0.20 0.38 16 25 N -0.48 -4.05 10.36 -13.25 -0.14 -4.18 16 26 C 0.10 0.71 10.86 -17.55 -0.19 0.52 16 27 C -0.10 -1.20 9.70 -39.58 -0.38 -1.58 16 28 C -0.11 -1.48 9.70 -39.58 -0.38 -1.86 16 29 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 30 H 0.36 8.54 5.52 -40.82 -0.23 8.32 16 31 H 0.04 0.69 8.09 -51.93 -0.42 0.27 16 32 H 0.04 0.68 8.09 -51.93 -0.42 0.26 16 33 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 34 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 36 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 37 H 0.40 2.41 8.46 -40.82 -0.35 2.06 16 38 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.55 8.05 -51.92 -0.42 0.14 16 41 H 0.08 0.54 8.05 -51.93 -0.42 0.12 16 42 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 43 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 44 H 0.15 0.60 8.06 -52.49 -0.42 0.17 16 45 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 46 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 47 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 402.07 15.07 6.06 6.06 Total: -1.00 -34.97 402.07 -10.54 -45.51 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.91 Total: 6.14 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -5.04 Total: -11.89 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: -0.03 Total: -56.58 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: 0.09 Total: -6.70 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.71 Total: 17.46 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.97 -10.54 -45.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666337387.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.675 kcal (2) G-P(sol) polarization free energy of solvation -34.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds