Wall clock time and date at job start Tue Mar 31 2020 22:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99744 * 2 1 4 4 H 1.48504 * 109.47015 * 269.99622 * 3 2 1 5 5 H 1.48498 * 109.47314 * 29.99473 * 3 2 1 6 6 H 1.48497 * 109.47428 * 149.99920 * 3 2 1 7 7 C 1.38809 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99609 * 0.02562 * 7 2 1 9 9 N 1.36931 * 120.00087 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00420 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47583 * 180.02562 * 10 9 7 12 12 C 1.38230 * 120.00101 * 89.99581 * 11 10 9 13 13 C 1.38229 * 120.00478 * 180.02562 * 12 11 10 14 14 C 1.38239 * 119.99526 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99967 * 179.97438 * 14 13 12 16 16 N 1.46501 * 109.47341 * 89.99740 * 15 14 13 17 17 C 1.34778 * 120.00606 * 179.97438 * 16 15 14 18 18 O 1.21283 * 119.99478 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00225 * 180.02562 * 17 16 15 20 20 C 1.52995 * 109.46908 * 179.97438 * 19 17 16 21 21 C 1.50706 * 109.47285 * 179.97438 * 20 19 17 22 22 C 1.38675 * 120.41529 * 89.99913 * 21 20 19 23 23 C 1.38631 * 118.41792 * 179.97438 * 22 21 20 24 24 C 1.38221 * 119.16077 * 0.25627 * 23 22 21 25 25 N 1.31860 * 120.76509 * 359.49797 * 24 23 22 26 26 C 1.31882 * 121.72556 * 0.49011 * 25 24 23 27 27 C 1.38231 * 120.00226 * 0.24733 * 14 13 12 28 28 C 1.38235 * 119.99562 * 270.02218 * 11 10 9 29 29 H 0.97002 * 120.00269 * 0.02562 * 1 2 3 30 30 H 0.97006 * 120.00331 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47225 * 59.99803 * 10 9 7 32 32 H 1.09003 * 109.46821 * 300.00312 * 10 9 7 33 33 H 1.08004 * 119.99948 * 0.02562 * 12 11 10 34 34 H 1.07993 * 120.00613 * 179.97438 * 13 12 11 35 35 H 1.08995 * 109.47247 * 329.99862 * 15 14 13 36 36 H 1.08998 * 109.47517 * 209.99629 * 15 14 13 37 37 H 0.97010 * 119.99594 * 359.97438 * 16 15 14 38 38 H 1.08995 * 109.47138 * 59.99940 * 19 17 16 39 39 H 1.09001 * 109.47238 * 299.99569 * 19 17 16 40 40 H 1.09008 * 109.47427 * 59.99859 * 20 19 17 41 41 H 1.08998 * 109.47562 * 299.99766 * 20 19 17 42 42 H 1.07998 * 120.79161 * 359.96013 * 22 21 20 43 43 H 1.08002 * 120.41548 * 179.97438 * 23 22 21 44 44 H 1.08002 * 119.62066 * 179.74470 * 24 23 22 45 45 H 1.07993 * 119.62126 * 179.75488 * 26 25 24 46 46 H 1.07999 * 120.00560 * 179.73197 * 27 14 13 47 47 H 1.07990 * 120.00388 * 359.97438 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4707 0.0000 11 6 5.5938 -2.1954 0.0000 12 6 6.2734 -2.0690 1.1971 13 6 7.6323 -1.8159 1.1972 14 6 8.3116 -1.6886 0.0000 15 6 9.7930 -1.4121 0.0000 16 7 10.5266 -2.6802 -0.0005 17 6 11.8744 -2.6792 -0.0011 18 8 12.4799 -1.6284 -0.0017 19 6 12.6288 -3.9837 -0.0022 20 6 14.1328 -3.7030 -0.0033 21 6 14.8874 -5.0075 -0.0038 22 6 15.2380 -5.6154 -1.1999 23 6 15.9322 -6.8144 -1.1519 24 6 16.2449 -7.3629 0.0777 25 7 15.8994 -6.7543 1.1952 26 6 15.2390 -5.6128 1.1877 27 6 7.6311 -1.8094 -1.1971 28 6 6.2732 -2.0686 -1.1972 29 1 -0.4850 0.8400 -0.0004 30 1 3.8647 -0.3620 -0.0004 31 1 3.8486 -3.0426 -0.8898 32 1 3.8492 -3.0421 0.8902 33 1 5.7425 -2.1680 2.1325 34 1 8.1631 -1.7167 2.1324 35 1 10.0560 -0.8406 0.8901 36 1 10.0559 -0.8400 -0.8898 37 1 10.0422 -3.5207 -0.0003 38 1 12.3655 -4.5550 -0.8923 39 1 12.3664 -4.5560 0.8877 40 1 14.3965 -3.1314 0.8866 41 1 14.3950 -3.1310 -0.8933 42 1 14.9762 -5.1656 -2.1462 43 1 16.2210 -7.3158 -2.0638 44 1 16.7819 -8.2988 0.1237 45 1 14.9697 -5.1457 2.1234 46 1 8.1610 -1.7056 -2.1324 47 1 5.7424 -2.1673 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666337387.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:11 Heat of formation + Delta-G solvation = 3.019429 kcal Electronic energy + Delta-G solvation = -26424.097710 eV Core-core repulsion = 22570.460871 eV Total energy + Delta-G solvation = -3853.636839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.25111 -40.83728 -40.16625 -37.10516 -35.86354 -35.44539 -33.87153 -32.97777 -32.27371 -31.87275 -30.96233 -28.68597 -26.48586 -25.25168 -24.46933 -23.80838 -23.64531 -22.53900 -21.76575 -21.25790 -19.87952 -18.39725 -17.92000 -17.44298 -17.27605 -16.81404 -16.72519 -16.59687 -16.18352 -16.06828 -15.69541 -15.42165 -14.97980 -14.81032 -14.59568 -14.58320 -14.36394 -14.12128 -13.99609 -13.94096 -13.89020 -13.33785 -13.28363 -13.15434 -13.08059 -12.85722 -12.48976 -12.20017 -11.99689 -11.92958 -11.92210 -11.77839 -11.05240 -11.04191 -10.69703 -10.36081 -10.10980 -9.88919 -9.84427 -9.65972 -9.34707 -8.05740 -5.39835 0.16267 0.22629 0.37137 0.48120 1.36398 1.38375 1.46156 1.66048 2.23408 2.45473 2.82811 2.91033 3.25763 3.54772 3.63544 3.74437 3.85005 3.88264 3.92234 4.00426 4.01165 4.08681 4.12545 4.12603 4.26845 4.30265 4.36287 4.54519 4.61761 4.67965 4.70233 4.75346 4.87497 4.87827 4.88751 4.96926 5.05579 5.16355 5.18037 5.24243 5.39461 5.40529 5.43835 5.58676 5.72052 5.77811 5.82083 6.03608 6.17915 6.55791 7.03702 7.05866 7.25438 7.78716 7.98691 9.15468 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028387 B = 0.001499 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.129731 B =18670.767467 C =19058.633607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.058 4.058 3 Si 0.953 3.047 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.256 1.256 7 C -0.238 4.238 8 H 0.060 0.940 9 N -0.753 5.753 10 C 0.188 3.812 11 C -0.092 4.092 12 C -0.116 4.116 13 C -0.099 4.099 14 C -0.107 4.107 15 C 0.169 3.831 16 N -0.716 5.716 17 C 0.512 3.488 18 O -0.584 6.584 19 C -0.126 4.126 20 C -0.055 4.055 21 C -0.133 4.133 22 C -0.078 4.078 23 C -0.168 4.168 24 C 0.077 3.923 25 N -0.517 5.517 26 C 0.086 3.914 27 C -0.098 4.098 28 C -0.115 4.115 29 H 0.259 0.741 30 H 0.365 0.635 31 H 0.036 0.964 32 H 0.034 0.966 33 H 0.124 0.876 34 H 0.142 0.858 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.414 0.586 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.154 0.846 43 H 0.161 0.839 44 H 0.172 0.828 45 H 0.162 0.838 46 H 0.143 0.857 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.965 -13.247 -2.533 38.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.250 4.250 3 Si 0.780 3.220 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.181 1.181 7 C -0.369 4.369 8 H 0.078 0.922 9 N -0.398 5.398 10 C 0.063 3.937 11 C -0.093 4.093 12 C -0.134 4.134 13 C -0.117 4.117 14 C -0.108 4.108 15 C 0.046 3.954 16 N -0.368 5.368 17 C 0.300 3.700 18 O -0.465 6.465 19 C -0.166 4.166 20 C -0.093 4.093 21 C -0.135 4.135 22 C -0.104 4.104 23 C -0.187 4.187 24 C -0.079 4.079 25 N -0.226 5.226 26 C -0.071 4.071 27 C -0.116 4.116 28 C -0.133 4.133 29 H 0.068 0.932 30 H 0.198 0.802 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.142 0.858 34 H 0.160 0.840 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.251 0.749 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.171 0.829 43 H 0.178 0.822 44 H 0.189 0.811 45 H 0.179 0.821 46 H 0.161 0.839 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 36.403 -13.000 -1.724 38.693 hybrid contribution -0.919 1.106 -0.675 1.588 sum 35.484 -11.894 -2.399 37.502 Atomic orbital electron populations 1.69874 1.07034 1.26761 1.59433 1.25453 0.96057 1.01081 1.02419 0.85440 0.78528 0.79838 0.78176 1.20332 1.21977 1.18116 1.19058 0.82479 0.93673 1.41699 0.92211 1.42700 1.02380 1.03740 1.91007 1.19728 0.87006 0.87764 0.99192 1.20145 0.94966 0.99768 0.94421 1.21217 0.94918 0.99669 0.97624 1.21212 0.93516 0.98507 0.98482 1.19835 0.95024 1.02604 0.93348 1.20039 0.86102 0.86379 1.02868 1.46069 1.06079 1.09860 1.74835 1.21173 0.82223 0.91926 0.74651 1.90716 1.68955 1.35308 1.51484 1.21650 0.94155 0.94129 1.06653 1.20171 0.92213 0.92618 1.04327 1.20913 1.00257 0.97973 0.94356 1.21877 0.94980 0.94678 0.98869 1.22473 0.99274 0.96744 1.00256 1.23205 0.96892 0.99893 0.87953 1.67697 1.11958 1.10063 1.32859 1.22936 0.94281 0.91334 0.98545 1.21222 0.93526 0.98428 0.98455 1.21229 0.94919 0.99588 0.97605 0.93219 0.80174 0.94625 0.94799 0.85815 0.84036 0.90969 0.90844 0.74906 0.86664 0.86944 0.90622 0.90382 0.82855 0.82186 0.81110 0.82093 0.83893 0.85628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.80 13.97 21.65 0.30 -62.50 16 2 C -0.06 -3.44 5.50 84.86 0.47 -2.98 16 3 Si 0.95 45.81 27.73 68.60 1.90 47.72 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.26 -11.32 6.52 99.48 0.65 -10.67 16 7 C -0.24 -13.66 10.47 84.03 0.88 -12.78 16 8 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 9 N -0.75 -35.44 5.40 -347.17 -1.87 -37.31 16 10 C 0.19 7.12 6.38 85.63 0.55 7.67 16 11 C -0.09 -2.75 5.25 -19.87 -0.10 -2.85 16 12 C -0.12 -3.00 9.70 22.27 0.22 -2.79 16 13 C -0.10 -2.00 9.70 22.27 0.22 -1.78 16 14 C -0.11 -1.97 5.25 -19.87 -0.10 -2.08 16 15 C 0.17 2.72 5.80 85.63 0.50 3.21 16 16 N -0.72 -8.97 5.55 -466.80 -2.59 -11.56 16 17 C 0.51 7.57 7.83 87.66 0.69 8.25 16 18 O -0.58 -13.77 15.98 -3.04 -0.05 -13.82 16 19 C -0.13 -1.00 5.68 29.85 0.17 -0.83 16 20 C -0.05 -0.56 4.66 29.85 0.14 -0.42 16 21 C -0.13 -1.39 5.15 -19.77 -0.10 -1.49 16 22 C -0.08 -0.66 9.86 22.47 0.22 -0.43 16 23 C -0.17 -1.32 10.11 22.36 0.23 -1.10 16 24 C 0.08 0.87 11.18 84.68 0.95 1.81 16 25 N -0.52 -8.31 10.36 -195.85 -2.03 -10.34 16 26 C 0.09 1.13 10.86 84.67 0.92 2.05 16 27 C -0.10 -1.95 9.70 22.27 0.22 -1.73 16 28 C -0.11 -2.93 9.70 22.27 0.22 -2.72 16 29 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 30 H 0.37 16.71 5.52 -92.70 -0.51 16.19 16 31 H 0.04 1.35 8.09 -2.39 -0.02 1.33 16 32 H 0.03 1.29 8.09 -2.39 -0.02 1.27 16 33 H 0.12 3.19 8.06 -2.91 -0.02 3.17 16 34 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 35 H 0.07 1.25 8.09 -2.39 -0.02 1.23 16 36 H 0.07 1.25 8.08 -2.39 -0.02 1.23 16 37 H 0.41 3.47 8.46 -92.70 -0.78 2.68 16 38 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.08 0.92 8.05 -2.38 -0.02 0.90 16 41 H 0.08 0.89 8.05 -2.39 -0.02 0.87 16 42 H 0.15 0.64 8.06 -2.91 -0.02 0.62 16 43 H 0.16 0.36 8.06 -2.91 -0.02 0.34 16 44 H 0.17 1.10 8.06 -2.91 -0.02 1.07 16 45 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 46 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 47 H 0.13 3.15 8.06 -2.92 -0.02 3.13 16 Total: -1.00 -76.95 402.07 1.55 -75.41 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -0.37 Total: 23.39 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: 6.25 Total: -10.98 kcal Atomic # 7 Polarization: -115.53 SS G_CDS: -6.19 Total: -121.72 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.05 Total: -13.82 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.90 Total: 47.72 kcal Total: -76.95 1.55 -75.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666337387.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.425 kcal (2) G-P(sol) polarization free energy of solvation -76.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds