Wall clock time and date at job start Tue Mar 31 2020 22:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.47219 * 34.99842 * 10 9 7 12 12 C 1.52999 * 109.46890 * 275.00034 * 10 9 7 13 13 O 1.42903 * 109.46807 * 294.99741 * 12 10 9 14 14 C 1.52997 * 109.47167 * 154.99975 * 10 9 7 15 15 N 1.46505 * 109.46985 * 304.99505 * 14 10 9 16 16 C 1.34774 * 119.99861 * 180.02562 * 15 14 10 17 17 O 1.21592 * 120.00329 * 0.02562 * 16 15 14 18 18 C 1.47521 * 120.00041 * 180.02562 * 16 15 14 19 19 C 1.36595 * 125.77115 * 179.71441 * 18 16 15 20 20 N 1.34815 * 106.84149 * 179.89775 * 19 18 16 21 21 C 1.46502 * 126.59922 * 180.13086 * 20 19 18 22 22 C 1.53175 * 109.53883 * 35.07148 * 21 20 19 23 23 C 1.53106 * 109.15516 * 183.24406 * 22 21 20 24 24 O 1.42896 * 109.49032 * 57.47371 * 23 22 21 25 25 C 1.42908 * 114.09598 * 298.89249 * 24 23 22 26 26 C 1.53084 * 109.41670 * 61.15565 * 25 24 23 27 27 N 1.40217 * 106.80769 * 0.36428 * 20 19 18 28 28 N 1.28762 * 108.36801 * 359.76656 * 27 20 19 29 29 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 30 30 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47298 * 54.99525 * 12 10 9 32 32 H 1.08997 * 109.46949 * 174.99894 * 12 10 9 33 33 H 0.96702 * 113.99897 * 179.97438 * 13 12 10 34 34 H 1.08996 * 109.47726 * 64.99738 * 14 10 9 35 35 H 1.09001 * 109.46766 * 185.00478 * 14 10 9 36 36 H 0.96994 * 120.00104 * 0.02562 * 15 14 10 37 37 H 1.07998 * 126.58208 * 0.04671 * 19 18 16 38 38 H 1.08997 * 109.54274 * 155.24588 * 21 20 19 39 39 H 1.09001 * 109.52769 * 303.05761 * 22 21 20 40 40 H 1.08999 * 109.52428 * 63.24706 * 22 21 20 41 41 H 1.09008 * 109.40160 * 297.49054 * 23 22 21 42 42 H 1.08998 * 109.48513 * 177.50792 * 23 22 21 43 43 H 1.09000 * 109.47999 * 301.16956 * 25 24 23 44 44 H 1.08996 * 109.48007 * 181.14282 * 25 24 23 45 45 H 1.08999 * 109.52704 * 182.48432 * 26 25 24 46 46 H 1.09001 * 109.57620 * 62.32760 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9709 -3.5519 0.5747 12 6 2.4163 -4.0324 -1.4507 13 8 1.2192 -4.2837 -2.1896 14 6 1.1830 -4.7535 0.5990 15 7 0.7416 -4.3398 1.9333 16 6 -0.0446 -5.1536 2.6654 17 8 -0.3872 -6.2313 2.2187 18 6 -0.4896 -4.7368 4.0087 19 6 -1.2885 -5.4624 4.8461 20 7 -1.4511 -4.7278 5.9647 21 6 -2.2300 -5.0997 7.1484 22 6 -2.1188 -6.6096 7.3812 23 6 -3.0000 -7.0008 8.5706 24 8 -4.3488 -6.6041 8.3154 25 6 -4.5193 -5.1963 8.1379 26 6 -3.7011 -4.7330 6.9299 27 7 -0.7357 -3.5368 5.7752 28 7 -0.1824 -3.5764 4.6132 29 1 -0.4851 -0.8400 -0.0004 30 1 0.3555 -2.3881 -0.0015 31 1 2.9641 -3.2122 -1.9146 32 1 3.0368 -4.9285 -1.4486 33 1 1.3708 -4.5275 -3.1130 34 1 0.3130 -4.9200 -0.0361 35 1 1.7583 -5.6761 0.6765 36 1 1.0152 -3.4802 2.2898 37 1 -1.7073 -6.4385 4.6506 38 1 -1.8469 -4.5674 8.0190 39 1 -2.4542 -7.1412 6.4907 40 1 -1.0818 -6.8701 7.5931 41 1 -2.6379 -6.5013 9.4693 42 1 -2.9595 -8.0806 8.7134 43 1 -4.1772 -4.6733 9.0309 44 1 -5.5734 -4.9763 7.9690 45 1 -3.7946 -3.6527 6.8192 46 1 -4.0690 -5.2246 6.0293 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676598959.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:24 Heat of formation + Delta-G solvation = -21.195379 kcal Electronic energy + Delta-G solvation = -29442.832728 eV Core-core repulsion = 25177.296592 eV Total energy + Delta-G solvation = -4265.536135 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.33078 -39.92955 -39.06856 -37.14512 -35.78303 -34.97005 -33.65250 -31.95803 -31.83059 -31.44258 -30.68761 -28.02295 -26.20123 -25.34925 -24.36639 -23.50643 -22.94856 -22.58790 -20.60152 -20.25654 -20.15610 -18.29858 -17.60876 -16.90498 -16.73799 -16.64635 -16.14610 -15.85907 -15.79946 -15.40784 -14.95988 -14.92177 -14.60595 -14.28698 -14.26940 -13.85798 -13.63999 -13.39156 -13.26548 -13.09945 -12.97717 -12.40074 -12.14073 -12.08165 -11.84155 -11.72549 -11.45206 -11.42200 -11.00211 -10.79653 -10.69141 -10.43081 -10.37877 -10.31176 -10.00569 -9.88302 -9.46382 -9.32254 -9.12424 -8.90997 -8.60269 -7.02477 -6.05997 -3.07022 1.06846 1.79850 1.81843 3.23522 3.42447 3.52900 3.53942 3.59343 3.72524 3.74462 3.94238 4.16257 4.18505 4.27646 4.49735 4.60601 4.67121 4.69228 4.80780 4.89438 4.90349 4.98283 5.03315 5.06054 5.16709 5.28800 5.37857 5.39911 5.48679 5.52516 5.61697 5.79295 5.87604 6.00190 6.01751 6.23256 6.31781 6.45105 6.53083 6.70093 6.85088 7.78730 7.81154 8.06037 8.17096 8.49496 8.80075 9.24462 10.11337 10.26285 11.41947 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013854 B = 0.002537 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.531717 B =11032.617649 C =12464.344151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.040 4.040 3 Si 1.082 2.918 4 H -0.295 1.295 5 H -0.296 1.296 6 H -0.289 1.289 7 C -0.338 4.338 8 H 0.064 0.936 9 N -0.723 5.723 10 C 0.171 3.829 11 H 0.067 0.933 12 C 0.060 3.940 13 O -0.562 6.562 14 C 0.117 3.883 15 N -0.696 5.696 16 C 0.599 3.401 17 O -0.553 6.553 18 C -0.094 4.094 19 C 0.089 3.911 20 N -0.361 5.361 21 C 0.152 3.848 22 C -0.171 4.171 23 C 0.067 3.933 24 O -0.378 6.378 25 C 0.066 3.934 26 C -0.170 4.170 27 N -0.065 5.065 28 N -0.192 5.192 29 H 0.257 0.743 30 H 0.372 0.628 31 H 0.050 0.950 32 H 0.028 0.972 33 H 0.364 0.636 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.417 0.583 37 H 0.200 0.800 38 H 0.115 0.885 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.058 0.942 42 H 0.106 0.894 43 H 0.059 0.941 44 H 0.106 0.894 45 H 0.090 0.910 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.657 -15.821 16.452 23.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.238 4.238 3 Si 0.913 3.087 4 H -0.223 1.223 5 H -0.223 1.223 6 H -0.215 1.215 7 C -0.469 4.469 8 H 0.082 0.918 9 N -0.366 5.366 10 C 0.060 3.940 11 H 0.085 0.915 12 C -0.021 4.021 13 O -0.365 6.365 14 C -0.007 4.007 15 N -0.347 5.347 16 C 0.383 3.617 17 O -0.431 6.431 18 C -0.233 4.233 19 C -0.067 4.067 20 N -0.146 5.146 21 C 0.050 3.950 22 C -0.210 4.210 23 C -0.010 4.010 24 O -0.297 6.297 25 C -0.011 4.011 26 C -0.209 4.209 27 N -0.044 5.044 28 N -0.066 5.066 29 H 0.069 0.931 30 H 0.206 0.794 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.209 0.791 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.255 0.745 37 H 0.217 0.783 38 H 0.133 0.867 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.124 0.876 43 H 0.077 0.923 44 H 0.124 0.876 45 H 0.109 0.891 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.837 -13.498 17.333 22.495 hybrid contribution 0.344 -2.062 -0.884 2.270 sum -4.493 -15.560 16.449 23.084 Atomic orbital electron populations 1.70815 1.06074 1.28726 1.52686 1.25726 0.97023 1.00902 1.00166 0.83215 0.73787 0.75466 0.76232 1.22250 1.22288 1.21503 1.20018 0.91865 0.85689 1.49319 0.91767 1.42350 1.05058 1.00028 1.89182 1.20525 0.95052 0.86510 0.91938 0.91483 1.23024 0.86409 0.97350 0.95349 1.86552 1.32230 1.92025 1.25726 1.21632 0.99700 0.97169 0.82196 1.45833 1.49546 1.21904 1.17410 1.16750 0.78647 0.84058 0.82292 1.90766 1.58176 1.22519 1.71667 1.21564 1.08205 0.94066 0.99466 1.23205 0.97977 0.99257 0.86281 1.50659 1.35890 1.14586 1.13435 1.21597 0.90978 0.96834 0.85589 1.22719 1.02792 0.93437 1.02055 1.22561 0.81701 1.01594 0.95174 1.88003 1.26593 1.23135 1.91945 1.22593 1.01089 0.81609 0.95825 1.22719 0.92934 1.03905 1.01341 1.82047 1.09290 1.01083 1.12008 1.74755 1.14369 1.16708 1.00748 0.93120 0.79443 0.93204 0.95389 0.79092 0.90427 0.91739 0.74516 0.78283 0.86738 0.89367 0.89161 0.92336 0.87565 0.92284 0.87622 0.89116 0.89706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.40 13.70 55.49 0.76 -28.64 16 2 C -0.04 -1.15 5.50 -17.43 -0.10 -1.25 16 3 Si 1.08 26.18 29.92 -169.99 -5.09 21.09 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.30 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.34 -9.33 9.93 -15.06 -0.15 -9.48 16 8 H 0.06 1.73 7.83 -52.48 -0.41 1.32 16 9 N -0.72 -17.93 4.51 -53.43 -0.24 -18.17 16 10 C 0.17 3.40 2.84 -67.93 -0.19 3.21 16 11 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 12 C 0.06 1.07 6.86 37.16 0.25 1.33 16 13 O -0.56 -10.18 12.64 -35.23 -0.45 -10.62 16 14 C 0.12 2.17 5.12 -4.04 -0.02 2.15 16 15 N -0.70 -13.12 5.39 -61.35 -0.33 -13.45 16 16 C 0.60 10.95 7.82 -12.48 -0.10 10.85 16 17 O -0.55 -10.84 16.86 5.28 0.09 -10.75 16 18 C -0.09 -1.53 6.99 -83.55 -0.58 -2.11 16 19 C 0.09 1.11 10.40 -16.83 -0.18 0.93 16 20 N -0.36 -4.12 3.55 -54.39 -0.19 -4.32 16 21 C 0.15 1.11 3.31 -67.75 -0.22 0.88 16 22 C -0.17 -0.91 5.15 -26.59 -0.14 -1.04 16 23 C 0.07 0.30 6.84 37.21 0.25 0.56 16 24 O -0.38 -2.55 10.77 -35.23 -0.38 -2.93 16 25 C 0.07 0.35 6.84 37.20 0.25 0.60 16 26 C -0.17 -1.14 5.75 -26.60 -0.15 -1.29 16 27 N -0.06 -1.00 13.78 60.35 0.83 -0.17 16 28 N -0.19 -3.40 12.04 32.85 0.40 -3.01 16 29 H 0.26 8.08 6.77 -40.82 -0.28 7.80 16 30 H 0.37 9.98 6.63 -40.82 -0.27 9.71 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.36 4.76 9.12 45.56 0.42 5.17 16 34 H 0.08 1.58 7.39 -51.93 -0.38 1.19 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.42 8.41 7.82 -40.82 -0.32 8.09 16 37 H 0.20 1.87 7.27 -52.49 -0.38 1.48 16 38 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.49 7.08 -51.93 -0.37 0.12 16 40 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.20 8.14 -51.92 -0.42 -0.23 16 42 H 0.11 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 44 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 385.38 15.07 5.81 5.81 Total: -1.00 -36.45 385.38 -5.72 -42.17 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: -5.86 Total: 17.67 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -1.07 Total: 5.33 kcal Atomic # 7 Polarization: -68.99 SS G_CDS: 1.22 Total: -67.76 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.74 Total: -24.30 kcal Atomic # 14 Polarization: 26.18 SS G_CDS: -5.09 Total: 21.09 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.45 -5.72 -42.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676598959.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.974 kcal (2) G-P(sol) polarization free energy of solvation -36.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds