Wall clock time and date at job start Tue Mar 31 2020 22:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.47219 * 34.99842 * 10 9 7 12 12 C 1.52999 * 109.46890 * 275.00034 * 10 9 7 13 13 O 1.42903 * 109.46807 * 294.99741 * 12 10 9 14 14 C 1.52997 * 109.47167 * 154.99975 * 10 9 7 15 15 N 1.46505 * 109.46985 * 304.99505 * 14 10 9 16 16 C 1.34774 * 119.99861 * 180.02562 * 15 14 10 17 17 O 1.21592 * 120.00329 * 0.02562 * 16 15 14 18 18 C 1.47521 * 120.00041 * 180.02562 * 16 15 14 19 19 C 1.36595 * 125.77115 * 179.71441 * 18 16 15 20 20 N 1.34815 * 106.84149 * 179.89775 * 19 18 16 21 21 C 1.46502 * 126.59922 * 180.13086 * 20 19 18 22 22 C 1.53175 * 109.53883 * 35.07148 * 21 20 19 23 23 C 1.53106 * 109.15516 * 183.24406 * 22 21 20 24 24 O 1.42896 * 109.49032 * 57.47371 * 23 22 21 25 25 C 1.42908 * 114.09598 * 298.89249 * 24 23 22 26 26 C 1.53084 * 109.41670 * 61.15565 * 25 24 23 27 27 N 1.40217 * 106.80769 * 0.36428 * 20 19 18 28 28 N 1.28762 * 108.36801 * 359.76656 * 27 20 19 29 29 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 30 30 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47298 * 54.99525 * 12 10 9 32 32 H 1.08997 * 109.46949 * 174.99894 * 12 10 9 33 33 H 0.96702 * 113.99897 * 179.97438 * 13 12 10 34 34 H 1.08996 * 109.47726 * 64.99738 * 14 10 9 35 35 H 1.09001 * 109.46766 * 185.00478 * 14 10 9 36 36 H 0.96994 * 120.00104 * 0.02562 * 15 14 10 37 37 H 1.07998 * 126.58208 * 0.04671 * 19 18 16 38 38 H 1.08997 * 109.54274 * 155.24588 * 21 20 19 39 39 H 1.09001 * 109.52769 * 303.05761 * 22 21 20 40 40 H 1.08999 * 109.52428 * 63.24706 * 22 21 20 41 41 H 1.09008 * 109.40160 * 297.49054 * 23 22 21 42 42 H 1.08998 * 109.48513 * 177.50792 * 23 22 21 43 43 H 1.09000 * 109.47999 * 301.16956 * 25 24 23 44 44 H 1.08996 * 109.48007 * 181.14282 * 25 24 23 45 45 H 1.08999 * 109.52704 * 182.48432 * 26 25 24 46 46 H 1.09001 * 109.57620 * 62.32760 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9709 -3.5519 0.5747 12 6 2.4163 -4.0324 -1.4507 13 8 1.2192 -4.2837 -2.1896 14 6 1.1830 -4.7535 0.5990 15 7 0.7416 -4.3398 1.9333 16 6 -0.0446 -5.1536 2.6654 17 8 -0.3872 -6.2313 2.2187 18 6 -0.4896 -4.7368 4.0087 19 6 -1.2885 -5.4624 4.8461 20 7 -1.4511 -4.7278 5.9647 21 6 -2.2300 -5.0997 7.1484 22 6 -2.1188 -6.6096 7.3812 23 6 -3.0000 -7.0008 8.5706 24 8 -4.3488 -6.6041 8.3154 25 6 -4.5193 -5.1963 8.1379 26 6 -3.7011 -4.7330 6.9299 27 7 -0.7357 -3.5368 5.7752 28 7 -0.1824 -3.5764 4.6132 29 1 -0.4851 -0.8400 -0.0004 30 1 0.3555 -2.3881 -0.0015 31 1 2.9641 -3.2122 -1.9146 32 1 3.0368 -4.9285 -1.4486 33 1 1.3708 -4.5275 -3.1130 34 1 0.3130 -4.9200 -0.0361 35 1 1.7583 -5.6761 0.6765 36 1 1.0152 -3.4802 2.2898 37 1 -1.7073 -6.4385 4.6506 38 1 -1.8469 -4.5674 8.0190 39 1 -2.4542 -7.1412 6.4907 40 1 -1.0818 -6.8701 7.5931 41 1 -2.6379 -6.5013 9.4693 42 1 -2.9595 -8.0806 8.7134 43 1 -4.1772 -4.6733 9.0309 44 1 -5.5734 -4.9763 7.9690 45 1 -3.7946 -3.6527 6.8192 46 1 -4.0690 -5.2246 6.0293 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676598959.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:23 Heat of formation + Delta-G solvation = -52.874400 kcal Electronic energy + Delta-G solvation = -29444.206433 eV Core-core repulsion = 25177.296592 eV Total energy + Delta-G solvation = -4266.909841 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.41952 -40.68901 -40.27135 -38.70219 -36.57803 -36.50702 -35.43392 -33.25482 -32.71835 -32.27526 -31.93267 -29.83223 -27.26747 -26.39207 -25.55262 -24.87271 -24.20111 -23.46578 -21.81679 -21.48595 -21.23046 -19.62797 -19.30618 -18.23835 -17.79804 -17.40238 -17.29538 -16.98117 -16.75381 -16.31115 -16.22840 -15.93163 -15.80612 -15.65428 -15.40850 -15.02525 -15.00568 -14.90765 -14.69902 -14.41295 -13.53610 -13.48771 -13.43254 -13.06507 -12.79785 -12.71179 -12.63612 -12.55175 -12.43543 -12.28755 -12.06444 -11.87187 -11.52794 -11.35183 -11.30358 -11.27532 -10.96271 -10.76720 -10.76188 -10.50999 -10.06780 -9.10052 -8.33090 -5.27371 0.02772 0.52501 0.91449 1.59292 1.70538 1.83165 2.07043 2.17865 2.73630 2.86220 3.05839 3.12831 3.40554 3.44223 3.52534 3.58934 3.72057 3.74093 3.77508 3.81543 3.92452 4.05735 4.12591 4.19453 4.34808 4.42741 4.47260 4.49337 4.54219 4.57490 4.64703 4.75051 4.77358 4.86615 4.92276 4.93628 5.02394 5.13213 5.35047 5.35951 5.63695 6.15547 6.35974 6.52864 6.80925 6.99585 7.04707 7.12080 8.00988 8.15448 9.17841 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013854 B = 0.002537 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.531717 B =11032.617649 C =12464.344151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.105 4.105 3 Si 1.128 2.872 4 H -0.287 1.287 5 H -0.270 1.270 6 H -0.299 1.299 7 C -0.324 4.324 8 H 0.072 0.928 9 N -0.734 5.734 10 C 0.164 3.836 11 H 0.074 0.926 12 C 0.068 3.932 13 O -0.584 6.584 14 C 0.129 3.871 15 N -0.702 5.702 16 C 0.600 3.400 17 O -0.569 6.569 18 C -0.123 4.123 19 C 0.113 3.887 20 N -0.341 5.341 21 C 0.141 3.859 22 C -0.165 4.165 23 C 0.066 3.934 24 O -0.397 6.397 25 C 0.070 3.930 26 C -0.166 4.166 27 N -0.086 5.086 28 N -0.229 5.229 29 H 0.241 0.759 30 H 0.357 0.643 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.387 0.613 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.410 0.590 37 H 0.233 0.767 38 H 0.128 0.872 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.073 0.927 42 H 0.121 0.879 43 H 0.075 0.925 44 H 0.113 0.887 45 H 0.081 0.919 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.949 -17.466 17.706 25.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.296 4.296 3 Si 0.954 3.046 4 H -0.215 1.215 5 H -0.196 1.196 6 H -0.225 1.225 7 C -0.455 4.455 8 H 0.090 0.910 9 N -0.376 5.376 10 C 0.055 3.945 11 H 0.092 0.908 12 C -0.013 4.013 13 O -0.391 6.391 14 C 0.005 3.995 15 N -0.352 5.352 16 C 0.385 3.615 17 O -0.449 6.449 18 C -0.263 4.263 19 C -0.046 4.046 20 N -0.126 5.126 21 C 0.042 3.958 22 C -0.204 4.204 23 C -0.011 4.011 24 O -0.315 6.315 25 C -0.008 4.008 26 C -0.205 4.205 27 N -0.065 5.065 28 N -0.102 5.102 29 H 0.052 0.948 30 H 0.189 0.811 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.235 0.765 34 H 0.076 0.924 35 H 0.106 0.894 36 H 0.246 0.754 37 H 0.249 0.751 38 H 0.145 0.855 39 H 0.107 0.893 40 H 0.117 0.883 41 H 0.092 0.908 42 H 0.139 0.861 43 H 0.093 0.907 44 H 0.131 0.869 45 H 0.100 0.900 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.088 -15.197 18.596 24.362 hybrid contribution 0.089 -1.713 -1.204 2.096 sum -3.998 -16.911 17.392 24.586 Atomic orbital electron populations 1.70944 1.07374 1.27747 1.56311 1.27092 0.97025 1.04611 1.00866 0.82609 0.73589 0.71753 0.76632 1.21450 1.19554 1.22546 1.20367 0.92315 0.86651 1.46193 0.90979 1.42473 1.04476 1.01147 1.89488 1.20806 0.94951 0.84930 0.93807 0.90781 1.22811 0.86529 0.98710 0.93249 1.86503 1.32734 1.92177 1.27662 1.21510 0.98855 0.97442 0.81734 1.45874 1.50017 1.21687 1.17578 1.16973 0.78002 0.83644 0.82882 1.90739 1.58780 1.23052 1.72332 1.21500 1.10417 0.94938 0.99430 1.23604 0.95930 0.99651 0.85367 1.50967 1.34487 1.13042 1.14078 1.22103 0.90746 0.98689 0.84303 1.22737 1.03644 0.91371 1.02638 1.22723 0.80552 1.02692 0.95112 1.87987 1.27881 1.23684 1.91989 1.22645 1.01288 0.81292 0.95541 1.22696 0.92628 1.03272 1.01915 1.81937 1.10226 1.02917 1.11458 1.74725 1.15829 1.17845 1.01760 0.94839 0.81080 0.94699 0.91130 0.76498 0.92370 0.89420 0.75401 0.75105 0.85467 0.89348 0.88281 0.90850 0.86100 0.90718 0.86887 0.90023 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.96 13.70 21.65 0.30 -62.67 16 2 C -0.10 -6.15 5.50 84.86 0.47 -5.68 16 3 Si 1.13 53.03 29.92 68.60 2.05 55.08 16 4 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 7 C -0.32 -17.94 9.93 84.03 0.83 -17.11 16 8 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 9 N -0.73 -36.89 4.51 -322.94 -1.46 -38.35 16 10 C 0.16 6.43 2.84 44.99 0.13 6.56 16 11 H 0.07 2.80 8.08 -2.38 -0.02 2.78 16 12 C 0.07 2.30 6.86 71.98 0.49 2.79 16 13 O -0.58 -20.48 12.64 -148.98 -1.88 -22.36 16 14 C 0.13 4.71 5.12 86.38 0.44 5.16 16 15 N -0.70 -26.89 5.39 -466.28 -2.51 -29.41 16 16 C 0.60 22.11 7.82 86.69 0.68 22.78 16 17 O -0.57 -22.10 16.86 -4.01 -0.07 -22.17 16 18 C -0.12 -4.04 6.99 40.81 0.29 -3.75 16 19 C 0.11 2.66 10.40 83.85 0.87 3.54 16 20 N -0.34 -7.45 3.55 -325.98 -1.16 -8.61 16 21 C 0.14 1.80 3.31 45.11 0.15 1.95 16 22 C -0.17 -1.32 5.15 30.69 0.16 -1.16 16 23 C 0.07 0.40 6.84 72.02 0.49 0.90 16 24 O -0.40 -4.41 10.77 -148.98 -1.60 -6.02 16 25 C 0.07 0.59 6.84 72.01 0.49 1.09 16 26 C -0.17 -2.01 5.75 30.68 0.18 -1.83 16 27 N -0.09 -2.68 13.78 37.02 0.51 -2.17 16 28 N -0.23 -8.29 12.04 -50.00 -0.60 -8.90 16 29 H 0.24 15.82 6.77 -92.71 -0.63 15.19 16 30 H 0.36 19.90 6.63 -92.71 -0.61 19.28 16 31 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.39 9.45 9.12 -74.06 -0.68 8.77 16 34 H 0.06 2.37 7.39 -2.39 -0.02 2.36 16 35 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 36 H 0.41 17.07 7.82 -92.71 -0.73 16.34 16 37 H 0.23 3.80 7.27 -2.91 -0.02 3.78 16 38 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.09 0.73 7.08 -2.39 -0.02 0.71 16 40 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.07 0.25 8.14 -2.38 -0.02 0.23 16 42 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -80.69 385.38 -1.59 -82.28 By element: Atomic # 1 Polarization: 48.90 SS G_CDS: -0.83 Total: 48.07 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 5.67 Total: 15.22 kcal Atomic # 7 Polarization: -145.18 SS G_CDS: -4.92 Total: -150.10 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -3.55 Total: -50.55 kcal Atomic # 14 Polarization: 53.03 SS G_CDS: 2.05 Total: 55.08 kcal Total: -80.69 -1.59 -82.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676598959.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.405 kcal (2) G-P(sol) polarization free energy of solvation -80.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds