Wall clock time and date at job start Tue Mar 31 2020 22:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.08995 * 109.47013 * 324.72220 * 10 9 7 12 12 C 1.52999 * 109.47257 * 84.72207 * 10 9 7 13 13 O 1.42898 * 109.47018 * 65.00125 * 12 10 9 14 14 C 1.53004 * 109.47065 * 204.72207 * 10 9 7 15 15 N 1.46502 * 109.46925 * 55.00022 * 14 10 9 16 16 C 1.34775 * 119.99947 * 180.02562 * 15 14 10 17 17 O 1.21595 * 119.99995 * 359.97438 * 16 15 14 18 18 C 1.47518 * 119.99847 * 179.97438 * 16 15 14 19 19 C 1.36598 * 125.76884 * 179.71500 * 18 16 15 20 20 N 1.34816 * 106.84039 * 179.89676 * 19 18 16 21 21 C 1.46500 * 126.59348 * 180.12835 * 20 19 18 22 22 C 1.53175 * 109.54644 * 35.07051 * 21 20 19 23 23 C 1.53097 * 109.15910 * 183.23958 * 22 21 20 24 24 O 1.42905 * 109.48822 * 57.47117 * 23 22 21 25 25 C 1.42904 * 114.09707 * 298.88962 * 24 23 22 26 26 C 1.53087 * 109.41469 * 61.15786 * 25 24 23 27 27 N 1.40208 * 106.80964 * 0.35449 * 20 19 18 28 28 N 1.28765 * 108.36695 * 359.77299 * 27 20 19 29 29 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47083 * 185.00118 * 12 10 9 32 32 H 1.08995 * 109.47300 * 304.99882 * 12 10 9 33 33 H 0.96709 * 114.00043 * 179.97438 * 13 12 10 34 34 H 1.08997 * 109.47038 * 174.99692 * 14 10 9 35 35 H 1.08999 * 109.47047 * 295.00318 * 14 10 9 36 36 H 0.96997 * 120.00059 * 359.97438 * 15 14 10 37 37 H 1.08006 * 126.58433 * 0.03132 * 19 18 16 38 38 H 1.09007 * 109.53832 * 155.24220 * 21 20 19 39 39 H 1.09009 * 109.51971 * 303.05417 * 22 21 20 40 40 H 1.08994 * 109.52375 * 63.23784 * 22 21 20 41 41 H 1.09000 * 109.40956 * 297.49436 * 23 22 21 42 42 H 1.09001 * 109.48364 * 177.49920 * 23 22 21 43 43 H 1.08996 * 109.48060 * 301.17057 * 25 24 23 44 44 H 1.09004 * 109.48027 * 181.13639 * 25 24 23 45 45 H 1.09005 * 109.52249 * 182.48466 * 26 25 24 46 46 H 1.09007 * 109.57589 * 62.32615 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 2.9688 -3.5536 -0.5824 12 6 2.4213 -4.0284 1.4463 13 8 1.2268 -4.2776 2.1899 14 6 1.1809 -4.7552 -0.5972 15 7 0.7348 -4.3453 -1.9310 16 6 -0.0547 -5.1607 -2.6577 17 8 -0.3965 -6.2368 -2.2065 18 6 -0.5044 -4.7476 -4.0006 19 6 -1.2980 -5.4798 -4.8373 20 7 -1.4714 -4.7446 -5.9539 21 6 -2.2541 -5.1202 -7.1340 22 6 -3.4804 -5.9288 -6.6996 23 6 -4.2476 -6.3852 -7.9433 24 8 -3.3814 -7.1505 -8.7837 25 6 -2.2428 -6.4293 -9.2589 26 6 -1.3938 -5.9766 -8.0682 27 7 -0.7544 -3.5537 -5.7707 28 7 -0.1978 -3.5897 -4.6102 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 3.0418 -4.9245 1.4445 32 1 2.9707 -3.2069 1.9060 33 1 1.3816 -4.5196 3.1134 34 1 1.7558 -5.6780 -0.6740 35 1 0.3131 -4.9198 0.0415 36 1 1.0071 -3.4867 -2.2909 37 1 -1.7096 -6.4589 -4.6409 38 1 -2.5775 -4.2208 -7.6583 39 1 -3.1585 -6.8014 -6.1310 40 1 -4.1258 -5.3068 -6.0795 41 1 -4.6052 -5.5121 -8.4890 42 1 -5.0967 -6.9986 -7.6419 43 1 -2.5742 -5.5568 -9.8218 44 1 -1.6477 -7.0746 -9.9052 45 1 -0.5486 -5.3887 -8.4261 46 1 -1.0276 -6.8496 -7.5278 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676598960.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:27 Heat of formation + Delta-G solvation = -21.292930 kcal Electronic energy + Delta-G solvation = -29375.262865 eV Core-core repulsion = 25109.722500 eV Total energy + Delta-G solvation = -4265.540365 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.28220 -39.90759 -38.98613 -37.03395 -35.75187 -34.83706 -33.41333 -31.93887 -31.78659 -31.38518 -30.66966 -28.26465 -26.16527 -25.28536 -24.34735 -23.65034 -22.92115 -22.54778 -20.56949 -20.17024 -19.97781 -18.25725 -17.48581 -16.82273 -16.70784 -16.54732 -16.07169 -15.78031 -15.74506 -15.39866 -14.91682 -14.82847 -14.63714 -14.23699 -14.13011 -14.01150 -13.43802 -13.31906 -13.09043 -12.91745 -12.76360 -12.35439 -12.12607 -12.06821 -11.92319 -11.71111 -11.40301 -11.36630 -10.97084 -10.82781 -10.79349 -10.51106 -10.38799 -10.29922 -10.01142 -9.83582 -9.69709 -9.31810 -9.26846 -8.91201 -8.50949 -6.95688 -5.73347 -3.03479 1.11643 1.83893 1.88041 3.24645 3.45130 3.49585 3.50796 3.53142 3.59916 3.78889 3.95801 4.20748 4.21135 4.29591 4.51834 4.59645 4.63990 4.71004 4.84796 4.92137 4.97467 5.03513 5.05047 5.08159 5.19855 5.31724 5.38746 5.46848 5.54149 5.58674 5.62830 5.85219 5.95003 6.08015 6.11168 6.27661 6.41754 6.54071 6.56410 6.79611 6.94166 7.70429 7.86030 8.13176 8.25030 8.43172 8.58178 9.55723 10.10849 10.47056 11.48367 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014246 B = 0.002490 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.053733 B =11241.699041 C =12579.431282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.712 5.712 10 C 0.165 3.835 11 H 0.066 0.934 12 C 0.060 3.940 13 O -0.560 6.560 14 C 0.119 3.881 15 N -0.694 5.694 16 C 0.599 3.401 17 O -0.554 6.554 18 C -0.092 4.092 19 C 0.088 3.912 20 N -0.361 5.361 21 C 0.152 3.848 22 C -0.172 4.172 23 C 0.067 3.933 24 O -0.379 6.379 25 C 0.066 3.934 26 C -0.169 4.169 27 N -0.066 5.066 28 N -0.191 5.191 29 H 0.254 0.746 30 H 0.389 0.611 31 H 0.027 0.973 32 H 0.049 0.951 33 H 0.363 0.637 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.418 0.582 37 H 0.200 0.800 38 H 0.115 0.885 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.059 0.941 42 H 0.107 0.893 43 H 0.059 0.941 44 H 0.105 0.895 45 H 0.089 0.911 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.243 -15.715 -16.304 23.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.377 4.377 8 H 0.088 0.912 9 N -0.354 5.354 10 C 0.054 3.946 11 H 0.084 0.916 12 C -0.022 4.022 13 O -0.363 6.363 14 C -0.006 4.006 15 N -0.344 5.344 16 C 0.382 3.618 17 O -0.433 6.433 18 C -0.231 4.231 19 C -0.068 4.068 20 N -0.146 5.146 21 C 0.050 3.950 22 C -0.211 4.211 23 C -0.010 4.010 24 O -0.297 6.297 25 C -0.011 4.011 26 C -0.207 4.207 27 N -0.046 5.046 28 N -0.065 5.065 29 H 0.064 0.936 30 H 0.223 0.777 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.208 0.792 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.256 0.744 37 H 0.217 0.783 38 H 0.132 0.868 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.077 0.923 42 H 0.125 0.875 43 H 0.077 0.923 44 H 0.123 0.877 45 H 0.107 0.893 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.269 -14.991 -17.250 23.454 hybrid contribution 0.354 0.715 0.990 1.271 sum -4.915 -14.276 -16.261 22.189 Atomic orbital electron populations 1.69694 1.05084 1.25502 1.56876 1.24741 0.95438 0.97629 1.02628 0.86157 0.78736 0.84333 0.77128 1.20614 1.21832 1.22006 1.19240 0.90901 0.84026 1.43546 0.91153 1.42370 1.06067 0.99036 1.87910 1.20596 0.95101 0.87039 0.91895 0.91584 1.23040 0.86479 0.97276 0.95375 1.86575 1.32179 1.92088 1.25478 1.21611 0.99659 0.97048 0.82244 1.45818 1.49214 1.21923 1.17494 1.16736 0.78697 0.84056 0.82287 1.90763 1.58387 1.22719 1.71424 1.21579 1.08166 0.93914 0.99445 1.23206 0.98011 0.99152 0.86454 1.50640 1.36073 1.14394 1.13525 1.21585 0.90384 0.99714 0.83327 1.22722 0.96489 1.01325 1.00535 1.22569 0.92598 0.96640 0.89226 1.87999 1.36039 1.39114 1.66560 1.22587 0.86909 0.97288 0.94366 1.22708 0.99587 1.00822 0.97630 1.82041 1.09258 1.01147 1.12145 1.74754 1.14371 1.16822 1.00516 0.93562 0.77655 0.95525 0.93284 0.79215 0.91875 0.90341 0.74435 0.78312 0.86754 0.89364 0.89026 0.92306 0.87526 0.92305 0.87717 0.89258 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.15 13.06 55.49 0.72 -27.42 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 7 C -0.25 -6.68 9.93 -15.06 -0.15 -6.83 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.71 -17.61 4.51 -53.43 -0.24 -17.85 16 10 C 0.16 3.25 2.84 -67.93 -0.19 3.05 16 11 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 12 C 0.06 1.05 6.85 37.16 0.25 1.31 16 13 O -0.56 -10.12 12.64 -35.23 -0.45 -10.57 16 14 C 0.12 2.19 5.12 -4.04 -0.02 2.17 16 15 N -0.69 -13.11 5.38 -61.35 -0.33 -13.44 16 16 C 0.60 10.99 7.82 -12.48 -0.10 10.90 16 17 O -0.55 -10.92 16.86 5.28 0.09 -10.83 16 18 C -0.09 -1.50 6.99 -83.55 -0.58 -2.09 16 19 C 0.09 1.10 10.40 -16.83 -0.18 0.92 16 20 N -0.36 -4.15 3.55 -54.38 -0.19 -4.35 16 21 C 0.15 1.11 3.31 -67.75 -0.22 0.89 16 22 C -0.17 -0.98 5.15 -26.59 -0.14 -1.11 16 23 C 0.07 0.32 6.84 37.21 0.25 0.57 16 24 O -0.38 -2.51 10.77 -35.23 -0.38 -2.89 16 25 C 0.07 0.32 6.84 37.20 0.25 0.58 16 26 C -0.17 -1.04 5.75 -26.59 -0.15 -1.19 16 27 N -0.07 -1.03 13.78 60.35 0.83 -0.20 16 28 N -0.19 -3.39 12.04 32.84 0.40 -2.99 16 29 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.39 10.70 7.80 -40.82 -0.32 10.38 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.36 4.72 9.12 45.56 0.42 5.14 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.08 1.60 7.39 -51.93 -0.38 1.22 16 36 H 0.42 8.41 7.82 -40.82 -0.32 8.09 16 37 H 0.20 1.88 7.27 -52.48 -0.38 1.50 16 38 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.09 0.51 7.08 -51.92 -0.37 0.14 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 42 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 387.08 15.07 5.83 5.83 Total: -1.00 -35.56 387.08 -5.78 -41.33 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -5.97 Total: 17.11 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: -1.07 Total: 8.85 kcal Atomic # 7 Polarization: -67.44 SS G_CDS: 1.19 Total: -66.25 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.74 Total: -24.29 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.56 -5.78 -41.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676598960.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.042 kcal (2) G-P(sol) polarization free energy of solvation -35.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds