Wall clock time and date at job start Tue Mar 31 2020 22:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.08995 * 109.47013 * 324.72220 * 10 9 7 12 12 C 1.52999 * 109.47257 * 84.72207 * 10 9 7 13 13 O 1.42898 * 109.47018 * 65.00125 * 12 10 9 14 14 C 1.53004 * 109.47065 * 204.72207 * 10 9 7 15 15 N 1.46502 * 109.46925 * 55.00022 * 14 10 9 16 16 C 1.34775 * 119.99947 * 180.02562 * 15 14 10 17 17 O 1.21595 * 119.99995 * 359.97438 * 16 15 14 18 18 C 1.47518 * 119.99847 * 179.97438 * 16 15 14 19 19 C 1.36598 * 125.76884 * 179.71500 * 18 16 15 20 20 N 1.34816 * 106.84039 * 179.89676 * 19 18 16 21 21 C 1.46500 * 126.59348 * 180.12835 * 20 19 18 22 22 C 1.53175 * 109.54644 * 35.07051 * 21 20 19 23 23 C 1.53097 * 109.15910 * 183.23958 * 22 21 20 24 24 O 1.42905 * 109.48822 * 57.47117 * 23 22 21 25 25 C 1.42904 * 114.09707 * 298.88962 * 24 23 22 26 26 C 1.53087 * 109.41469 * 61.15786 * 25 24 23 27 27 N 1.40208 * 106.80964 * 0.35449 * 20 19 18 28 28 N 1.28765 * 108.36695 * 359.77299 * 27 20 19 29 29 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47083 * 185.00118 * 12 10 9 32 32 H 1.08995 * 109.47300 * 304.99882 * 12 10 9 33 33 H 0.96709 * 114.00043 * 179.97438 * 13 12 10 34 34 H 1.08997 * 109.47038 * 174.99692 * 14 10 9 35 35 H 1.08999 * 109.47047 * 295.00318 * 14 10 9 36 36 H 0.96997 * 120.00059 * 359.97438 * 15 14 10 37 37 H 1.08006 * 126.58433 * 0.03132 * 19 18 16 38 38 H 1.09007 * 109.53832 * 155.24220 * 21 20 19 39 39 H 1.09009 * 109.51971 * 303.05417 * 22 21 20 40 40 H 1.08994 * 109.52375 * 63.23784 * 22 21 20 41 41 H 1.09000 * 109.40956 * 297.49436 * 23 22 21 42 42 H 1.09001 * 109.48364 * 177.49920 * 23 22 21 43 43 H 1.08996 * 109.48060 * 301.17057 * 25 24 23 44 44 H 1.09004 * 109.48027 * 181.13639 * 25 24 23 45 45 H 1.09005 * 109.52249 * 182.48466 * 26 25 24 46 46 H 1.09007 * 109.57589 * 62.32615 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 2.9688 -3.5536 -0.5824 12 6 2.4213 -4.0284 1.4463 13 8 1.2268 -4.2776 2.1899 14 6 1.1809 -4.7552 -0.5972 15 7 0.7348 -4.3453 -1.9310 16 6 -0.0547 -5.1607 -2.6577 17 8 -0.3965 -6.2368 -2.2065 18 6 -0.5044 -4.7476 -4.0006 19 6 -1.2980 -5.4798 -4.8373 20 7 -1.4714 -4.7446 -5.9539 21 6 -2.2541 -5.1202 -7.1340 22 6 -3.4804 -5.9288 -6.6996 23 6 -4.2476 -6.3852 -7.9433 24 8 -3.3814 -7.1505 -8.7837 25 6 -2.2428 -6.4293 -9.2589 26 6 -1.3938 -5.9766 -8.0682 27 7 -0.7544 -3.5537 -5.7707 28 7 -0.1978 -3.5897 -4.6102 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 3.0418 -4.9245 1.4445 32 1 2.9707 -3.2069 1.9060 33 1 1.3816 -4.5196 3.1134 34 1 1.7558 -5.6780 -0.6740 35 1 0.3131 -4.9198 0.0415 36 1 1.0071 -3.4867 -2.2909 37 1 -1.7096 -6.4589 -4.6409 38 1 -2.5775 -4.2208 -7.6583 39 1 -3.1585 -6.8014 -6.1310 40 1 -4.1258 -5.3068 -6.0795 41 1 -4.6052 -5.5121 -8.4890 42 1 -5.0967 -6.9986 -7.6419 43 1 -2.5742 -5.5568 -9.8218 44 1 -1.6477 -7.0746 -9.9052 45 1 -0.5486 -5.3887 -8.4261 46 1 -1.0276 -6.8496 -7.5278 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676598960.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:26 Heat of formation + Delta-G solvation = -52.232542 kcal Electronic energy + Delta-G solvation = -29376.604507 eV Core-core repulsion = 25109.722500 eV Total energy + Delta-G solvation = -4266.882008 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.37182 -40.62195 -40.22663 -38.56309 -36.51520 -36.36141 -35.18694 -33.21834 -32.67886 -32.26006 -31.91228 -30.03666 -27.19964 -26.34048 -25.64771 -24.84671 -24.14135 -23.42598 -21.61845 -21.39774 -21.20167 -19.58419 -19.09753 -18.13302 -17.69990 -17.31991 -17.26364 -16.91593 -16.76721 -16.36551 -16.02334 -15.89347 -15.78422 -15.60974 -15.23837 -14.94138 -14.86743 -14.84032 -14.50373 -14.29855 -13.65475 -13.49360 -13.38679 -13.04475 -12.79093 -12.73997 -12.65488 -12.59479 -12.41460 -12.26509 -12.20146 -11.85846 -11.72843 -11.50252 -11.28700 -11.26398 -10.95931 -10.74459 -10.69111 -10.45478 -9.97625 -8.98705 -7.88864 -5.17665 0.07437 0.58550 0.95343 1.48749 1.49786 1.58988 2.14882 2.25568 2.58541 2.87870 3.10199 3.16819 3.43392 3.43941 3.62352 3.65724 3.74527 3.79899 3.86372 3.91764 4.03887 4.09572 4.15348 4.21700 4.45276 4.46959 4.53233 4.58068 4.59054 4.63467 4.69060 4.76619 4.88608 4.89142 4.95321 5.02834 5.04531 5.24210 5.39113 5.45164 5.55894 6.16900 6.30023 6.45027 6.86962 7.09951 7.13124 7.37885 8.10825 8.35428 9.34429 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014246 B = 0.002490 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.053733 B =11241.699041 C =12579.431282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.074 4.074 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.299 1.299 6 H -0.299 1.299 7 C -0.233 4.233 8 H 0.082 0.918 9 N -0.723 5.723 10 C 0.158 3.842 11 H 0.077 0.923 12 C 0.067 3.933 13 O -0.583 6.583 14 C 0.129 3.871 15 N -0.700 5.700 16 C 0.599 3.401 17 O -0.571 6.571 18 C -0.121 4.121 19 C 0.111 3.889 20 N -0.342 5.342 21 C 0.141 3.859 22 C -0.167 4.167 23 C 0.067 3.933 24 O -0.396 6.396 25 C 0.068 3.932 26 C -0.162 4.162 27 N -0.088 5.088 28 N -0.227 5.227 29 H 0.247 0.753 30 H 0.372 0.628 31 H 0.069 0.931 32 H 0.036 0.964 33 H 0.386 0.614 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.411 0.589 37 H 0.232 0.768 38 H 0.124 0.876 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.071 0.929 42 H 0.120 0.880 43 H 0.072 0.928 44 H 0.116 0.884 45 H 0.085 0.915 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.854 -17.262 -17.374 24.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.226 1.226 6 H -0.226 1.226 7 C -0.365 4.365 8 H 0.100 0.900 9 N -0.363 5.363 10 C 0.049 3.951 11 H 0.095 0.905 12 C -0.014 4.014 13 O -0.390 6.390 14 C 0.005 3.995 15 N -0.349 5.349 16 C 0.384 3.616 17 O -0.451 6.451 18 C -0.261 4.261 19 C -0.047 4.047 20 N -0.126 5.126 21 C 0.041 3.959 22 C -0.206 4.206 23 C -0.010 4.010 24 O -0.315 6.315 25 C -0.009 4.009 26 C -0.201 4.201 27 N -0.067 5.067 28 N -0.100 5.100 29 H 0.056 0.944 30 H 0.203 0.797 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.234 0.766 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.247 0.753 37 H 0.248 0.752 38 H 0.142 0.858 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.138 0.862 43 H 0.091 0.909 44 H 0.134 0.866 45 H 0.104 0.896 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.828 -16.577 -18.329 25.181 hybrid contribution 0.199 1.034 1.250 1.634 sum -4.629 -15.544 -17.079 23.552 Atomic orbital electron populations 1.69862 1.06704 1.25568 1.59639 1.25509 0.96178 1.00937 1.04046 0.85138 0.78466 0.80317 0.76204 1.18670 1.22627 1.22618 1.19651 0.91476 0.84872 1.40522 0.90032 1.42481 1.05344 1.00306 1.88124 1.20882 0.95075 0.85319 0.93789 0.90527 1.22840 0.86556 0.98720 0.93282 1.86525 1.32807 1.92253 1.27413 1.21501 0.98811 0.97435 0.81739 1.45864 1.49661 1.21716 1.17674 1.16963 0.78074 0.83646 0.82884 1.90735 1.59010 1.23270 1.72104 1.21514 1.10375 0.94805 0.99412 1.23601 0.96002 0.99537 0.85539 1.50947 1.34676 1.12882 1.14141 1.22088 0.90863 1.00765 0.82198 1.22740 0.95624 1.01011 1.01230 1.22690 0.92431 0.97276 0.88570 1.87985 1.36551 1.40101 1.66836 1.22676 0.86492 0.97991 0.93771 1.22677 0.99495 1.00159 0.97777 1.81932 1.10186 1.02980 1.11595 1.74723 1.15797 1.17956 1.01515 0.94422 0.79682 0.91312 0.94518 0.76639 0.89554 0.92424 0.75271 0.75158 0.85810 0.89166 0.88865 0.91037 0.86244 0.90946 0.86591 0.89621 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.61 13.06 21.65 0.28 -60.33 16 2 C -0.07 -4.29 5.50 84.86 0.47 -3.83 16 3 Si 0.97 46.74 29.55 68.60 2.03 48.76 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 6 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 7 C -0.23 -12.68 9.93 84.03 0.83 -11.85 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.72 -36.05 4.51 -322.94 -1.46 -37.51 16 10 C 0.16 6.10 2.84 44.99 0.13 6.23 16 11 H 0.08 2.79 8.08 -2.39 -0.02 2.77 16 12 C 0.07 2.22 6.85 71.98 0.49 2.72 16 13 O -0.58 -20.37 12.64 -148.98 -1.88 -22.25 16 14 C 0.13 4.72 5.12 86.38 0.44 5.16 16 15 N -0.70 -26.79 5.38 -466.28 -2.51 -29.30 16 16 C 0.60 22.16 7.82 86.69 0.68 22.83 16 17 O -0.57 -22.28 16.86 -4.01 -0.07 -22.35 16 18 C -0.12 -3.99 6.99 40.82 0.29 -3.70 16 19 C 0.11 2.65 10.40 83.85 0.87 3.52 16 20 N -0.34 -7.51 3.55 -325.96 -1.16 -8.67 16 21 C 0.14 1.82 3.31 45.11 0.15 1.97 16 22 C -0.17 -1.52 5.15 30.69 0.16 -1.37 16 23 C 0.07 0.47 6.84 72.01 0.49 0.96 16 24 O -0.40 -4.29 10.77 -148.98 -1.60 -5.90 16 25 C 0.07 0.51 6.84 72.01 0.49 1.00 16 26 C -0.16 -1.70 5.75 30.68 0.18 -1.52 16 27 N -0.09 -2.73 13.78 37.02 0.51 -2.22 16 28 N -0.23 -8.23 12.04 -50.00 -0.60 -8.84 16 29 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 30 H 0.37 21.03 7.80 -92.71 -0.72 20.30 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.39 9.36 9.12 -74.05 -0.68 8.68 16 34 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.06 2.36 7.39 -2.39 -0.02 2.34 16 36 H 0.41 17.02 7.82 -92.71 -0.73 16.30 16 37 H 0.23 3.83 7.27 -2.91 -0.02 3.81 16 38 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.09 0.81 7.08 -2.38 -0.02 0.79 16 40 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.12 0.62 8.14 -2.38 -0.02 0.60 16 45 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 46 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -78.26 387.08 -1.88 -80.14 By element: Atomic # 1 Polarization: 47.43 SS G_CDS: -1.09 Total: 46.34 kcal Atomic # 6 Polarization: 16.44 SS G_CDS: 5.67 Total: 22.11 kcal Atomic # 7 Polarization: -141.92 SS G_CDS: -4.93 Total: -146.86 kcal Atomic # 8 Polarization: -46.94 SS G_CDS: -3.55 Total: -50.50 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.76 kcal Total: -78.26 -1.88 -80.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676598960.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.904 kcal (2) G-P(sol) polarization free energy of solvation -78.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds