Wall clock time and date at job start Tue Mar 31 2020 22:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00296 * 2 1 4 4 H 1.48494 * 109.47269 * 270.00297 * 3 2 1 5 5 H 1.48505 * 109.46835 * 30.00157 * 3 2 1 6 6 H 1.48507 * 109.47185 * 149.99908 * 3 2 1 7 7 C 1.38812 * 119.99641 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00289 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00048 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00272 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47343 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47190 * 180.02562 * 11 10 9 13 13 C 1.38229 * 120.00126 * 90.00286 * 12 11 10 14 14 C 1.38230 * 119.99985 * 179.97438 * 13 12 11 15 15 C 1.38230 * 120.00319 * 0.02562 * 14 13 12 16 16 C 1.50705 * 120.00548 * 179.97438 * 15 14 13 17 17 N 1.46490 * 109.47308 * 89.99712 * 16 15 14 18 18 C 1.34781 * 120.00221 * 180.02562 * 17 16 15 19 19 O 1.21777 * 119.99443 * 359.97438 * 18 17 16 20 20 C 1.41516 * 120.00044 * 179.97438 * 18 17 16 21 21 C 1.35622 * 119.99808 * 188.38472 * 20 18 17 22 22 C 1.41677 * 119.99965 * 32.31595 * 21 20 18 23 23 C 1.38276 * 126.25771 * 187.18720 * 22 21 20 24 24 C 1.39790 * 107.07649 * 180.02562 * 23 22 21 25 25 C 1.35504 * 107.90873 * 359.73438 * 24 23 22 26 26 N 1.35755 * 108.90879 * 0.42913 * 25 24 23 27 27 H 0.96997 * 125.68824 * 179.82227 * 26 25 24 28 28 C 1.38240 * 119.99896 * 0.25331 * 15 14 13 29 29 C 1.38236 * 119.99533 * 359.49119 * 28 15 14 30 30 H 0.97003 * 119.99570 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99766 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47045 * 59.99889 * 10 9 7 33 33 H 1.09002 * 109.46830 * 299.99897 * 10 9 7 34 34 H 1.08998 * 109.47005 * 60.00031 * 11 10 9 35 35 H 1.09002 * 109.46827 * 300.00214 * 11 10 9 36 36 H 1.08007 * 120.00091 * 359.97438 * 13 12 11 37 37 H 1.08005 * 120.00137 * 179.97438 * 14 13 12 38 38 H 1.09005 * 109.46469 * 329.99894 * 16 15 14 39 39 H 1.08998 * 109.47062 * 210.00525 * 16 15 14 40 40 H 0.97008 * 120.00082 * 359.97438 * 17 16 15 41 41 H 1.08001 * 120.00212 * 8.38695 * 20 18 17 42 42 H 1.07999 * 119.99831 * 212.32202 * 21 20 18 43 43 H 1.08005 * 126.46089 * 0.03313 * 23 22 21 44 44 H 1.08003 * 126.04037 * 179.97438 * 24 23 22 45 45 H 1.07997 * 125.54283 * 180.26007 * 25 24 23 46 46 H 1.07996 * 120.00132 * 179.72727 * 28 15 14 47 47 H 1.07999 * 119.99814 * 180.24851 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0000 11 6 5.6163 -2.1915 0.0000 12 6 6.3697 -3.4967 -0.0006 13 6 6.7152 -4.0947 -1.1980 14 6 7.4068 -5.2916 -1.1986 15 6 7.7524 -5.8907 -0.0018 16 6 8.5058 -7.1959 -0.0023 17 7 9.9461 -6.9284 -0.0023 18 6 10.8219 -7.9528 -0.0032 19 8 10.4158 -9.1009 -0.0037 20 6 12.2132 -7.6943 -0.0038 21 6 13.0921 -8.7128 -0.1760 22 6 12.7441 -9.8186 -0.9904 23 6 13.4743 -10.9827 -1.1444 24 6 12.7668 -11.7965 -2.0340 25 6 11.6402 -11.1365 -2.3964 26 7 11.6172 -9.9305 -1.7736 27 1 10.9210 -9.2609 -1.8624 28 6 7.4018 -5.2956 1.1957 29 6 6.7149 -4.0960 1.1962 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3622 0.0004 32 1 3.8490 -3.0424 -0.8902 33 1 3.8483 -3.0428 0.8898 34 1 5.8796 -1.6200 0.8900 35 1 5.8796 -1.6199 -0.8900 36 1 6.4448 -3.6268 -2.1332 37 1 7.6764 -5.7591 -2.1341 38 1 8.2424 -7.7671 -0.8926 39 1 8.2424 -7.7679 0.8874 40 1 10.2695 -6.0138 -0.0023 41 1 12.5752 -6.6860 0.1330 42 1 14.0572 -8.6809 0.3078 43 1 14.4140 -11.2188 -0.6672 44 1 13.0636 -12.7792 -2.3696 45 1 10.8850 -11.5083 -3.0730 46 1 7.6680 -5.7659 2.1307 47 1 6.4445 -3.6290 2.1318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690793645.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:32 Heat of formation + Delta-G solvation = 81.754841 kcal Electronic energy + Delta-G solvation = -26739.649783 eV Core-core repulsion = 22889.427167 eV Total energy + Delta-G solvation = -3850.222615 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.65378 -40.14606 -39.38884 -36.05376 -34.95862 -34.11407 -32.87215 -31.25466 -31.20821 -31.04758 -29.39247 -28.29789 -26.05631 -24.01597 -23.03749 -22.84338 -21.49101 -21.24240 -20.69263 -20.67380 -20.08877 -18.53060 -17.63770 -16.95491 -16.46997 -16.00165 -15.57954 -15.14729 -15.09055 -14.62959 -14.50759 -14.48878 -14.19169 -14.04234 -13.87533 -13.68735 -13.45860 -13.24861 -12.94596 -12.81874 -12.74476 -12.59498 -12.43936 -12.32795 -11.55850 -11.37382 -11.33484 -11.00750 -10.72085 -10.71425 -10.45704 -10.19252 -10.16278 -9.62349 -9.50042 -9.13740 -9.03302 -8.91579 -8.68111 -7.89798 -7.26721 -5.79080 -3.15228 0.09417 1.09236 1.30533 2.26045 2.62028 2.96778 3.02846 3.19431 3.34809 3.37314 3.42890 3.72180 4.37285 4.56587 4.61418 4.62134 4.65385 4.82651 4.85096 4.89592 5.01752 5.02073 5.03567 5.13909 5.32320 5.37722 5.42582 5.52364 5.56568 5.60747 5.63198 5.64438 5.72934 5.90234 5.92892 5.94482 5.97085 6.02275 6.08871 6.31133 6.39564 6.48924 6.58652 6.67605 6.76529 6.78506 6.88663 7.15400 7.25955 7.85199 7.96985 8.39669 9.18490 9.90611 10.10276 11.39287 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.036305 B = 0.001475 C = 0.001455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.062914 B =18980.853781 C =19242.921314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.090 0.910 9 N -0.757 5.757 10 C 0.165 3.835 11 C -0.098 4.098 12 C -0.053 4.053 13 C -0.117 4.117 14 C -0.099 4.099 15 C -0.126 4.126 16 C 0.165 3.835 17 N -0.722 5.722 18 C 0.543 3.457 19 O -0.556 6.556 20 C -0.297 4.297 21 C 0.055 3.945 22 C -0.001 4.001 23 C -0.141 4.141 24 C -0.218 4.218 25 C 0.025 3.975 26 N -0.510 5.510 27 H 0.418 0.582 28 C -0.098 4.098 29 C -0.117 4.117 30 H 0.260 0.740 31 H 0.361 0.639 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.403 0.597 41 H 0.135 0.865 42 H 0.147 0.853 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.165 0.835 46 H 0.121 0.879 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.044 -19.183 -2.548 36.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.038 3.962 11 C -0.136 4.136 12 C -0.054 4.054 13 C -0.135 4.135 14 C -0.117 4.117 15 C -0.126 4.126 16 C 0.042 3.958 17 N -0.372 5.372 18 C 0.337 3.663 19 O -0.438 6.438 20 C -0.319 4.319 21 C 0.035 3.965 22 C -0.112 4.112 23 C -0.167 4.167 24 C -0.242 4.242 25 C -0.113 4.113 26 N -0.105 5.105 27 H 0.261 0.739 28 C -0.116 4.116 29 C -0.135 4.135 30 H 0.070 0.930 31 H 0.193 0.807 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.238 0.762 41 H 0.153 0.847 42 H 0.164 0.836 43 H 0.159 0.841 44 H 0.156 0.844 45 H 0.182 0.818 46 H 0.139 0.861 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 30.337 -19.907 -2.545 36.375 hybrid contribution 0.187 2.015 0.103 2.026 sum 30.524 -17.892 -2.442 35.466 Atomic orbital electron populations 1.69707 1.05109 1.25845 1.57494 1.24682 0.95258 0.97234 1.01975 0.86525 0.79181 0.84900 0.77777 1.21051 1.21664 1.20357 1.19066 0.80580 0.94805 1.43140 0.89223 1.42720 1.04116 1.02178 1.91297 1.20567 0.87443 0.89322 0.98917 1.20913 0.96203 0.93408 1.03043 1.20017 0.95873 0.96506 0.93020 1.21113 0.98679 0.95670 0.98064 1.20994 0.98162 0.95427 0.97158 1.19714 1.02235 0.96899 0.93794 1.20140 0.78873 0.93945 1.02862 1.46161 1.06339 1.09676 1.75064 1.17243 0.87126 0.85037 0.76929 1.90870 1.80844 1.20626 1.51480 1.21811 0.92851 1.00405 1.16852 1.20841 0.99018 0.88866 0.87815 1.18245 0.91266 0.99078 1.02661 1.21520 1.00736 0.92975 1.01421 1.20840 0.96998 1.01480 1.04877 1.22148 1.00708 0.86698 1.01779 1.42637 1.18608 1.15664 1.33618 0.73949 1.21021 0.98013 0.95368 0.97247 1.21125 0.98672 0.95612 0.98088 0.93031 0.80670 0.95381 0.95419 0.90825 0.90828 0.85671 0.86216 0.90914 0.90675 0.76248 0.84677 0.83580 0.84111 0.84430 0.81788 0.86129 0.85660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.45 13.97 55.49 0.78 -28.67 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 3 Si 0.89 22.01 27.74 -169.99 -4.71 17.29 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 7 C -0.25 -7.05 10.47 -15.06 -0.16 -7.21 16 8 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 9 N -0.76 -18.08 5.41 -59.91 -0.32 -18.40 16 10 C 0.16 3.17 6.24 -4.04 -0.03 3.14 16 11 C -0.10 -1.44 5.46 -27.88 -0.15 -1.59 16 12 C -0.05 -0.68 5.13 -104.63 -0.54 -1.21 16 13 C -0.12 -1.34 9.70 -39.59 -0.38 -1.72 16 14 C -0.10 -0.97 9.70 -39.59 -0.38 -1.35 16 15 C -0.13 -1.18 5.25 -104.62 -0.55 -1.73 16 16 C 0.16 1.41 5.80 -5.20 -0.03 1.38 16 17 N -0.72 -5.42 5.54 -64.44 -0.36 -5.78 16 18 C 0.54 4.88 6.32 -15.01 -0.09 4.78 16 19 O -0.56 -6.73 12.73 5.12 0.07 -6.67 16 20 C -0.30 -2.03 9.72 -39.27 -0.38 -2.41 16 21 C 0.06 0.37 9.76 -39.21 -0.38 -0.01 16 22 C 0.00 -0.01 5.95 -83.91 -0.50 -0.51 16 23 C -0.14 -1.14 10.86 -38.99 -0.42 -1.56 16 24 C -0.22 -1.74 10.81 -39.98 -0.43 -2.17 16 25 C 0.03 0.20 11.90 -16.79 -0.20 0.00 16 26 N -0.51 -4.59 4.51 -10.56 -0.05 -4.64 16 27 H 0.42 3.74 6.14 -40.82 -0.25 3.49 16 28 C -0.10 -0.99 9.70 -39.58 -0.38 -1.37 16 29 C -0.12 -1.36 9.70 -39.58 -0.38 -1.74 16 30 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 31 H 0.36 8.29 5.53 -40.82 -0.23 8.06 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 1.05 8.09 -51.93 -0.42 0.63 16 35 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 36 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 37 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 38 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 39 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 40 H 0.40 2.39 8.42 -40.82 -0.34 2.05 16 41 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 42 H 0.15 0.53 8.06 -52.49 -0.42 0.10 16 43 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 44 H 0.14 0.83 8.06 -52.48 -0.42 0.40 16 45 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 46 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 47 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 396.20 15.07 5.97 5.97 Total: -1.00 -34.96 396.20 -10.87 -45.83 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -6.74 Total: 10.33 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -5.50 Total: -15.26 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: 0.05 Total: -57.50 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: 0.07 Total: -6.67 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.29 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.96 -10.87 -45.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690793645.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.582 kcal (2) G-P(sol) polarization free energy of solvation -34.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds