Wall clock time and date at job start Tue Mar 31 2020 22:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00296 * 2 1 4 4 H 1.48494 * 109.47269 * 270.00297 * 3 2 1 5 5 H 1.48505 * 109.46835 * 30.00157 * 3 2 1 6 6 H 1.48507 * 109.47185 * 149.99908 * 3 2 1 7 7 C 1.38812 * 119.99641 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00289 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00048 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00272 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47343 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47190 * 180.02562 * 11 10 9 13 13 C 1.38229 * 120.00126 * 90.00286 * 12 11 10 14 14 C 1.38230 * 119.99985 * 179.97438 * 13 12 11 15 15 C 1.38230 * 120.00319 * 0.02562 * 14 13 12 16 16 C 1.50705 * 120.00548 * 179.97438 * 15 14 13 17 17 N 1.46490 * 109.47308 * 89.99712 * 16 15 14 18 18 C 1.34781 * 120.00221 * 180.02562 * 17 16 15 19 19 O 1.21777 * 119.99443 * 359.97438 * 18 17 16 20 20 C 1.41516 * 120.00044 * 179.97438 * 18 17 16 21 21 C 1.35622 * 119.99808 * 188.38472 * 20 18 17 22 22 C 1.41677 * 119.99965 * 32.31595 * 21 20 18 23 23 C 1.38276 * 126.25771 * 187.18720 * 22 21 20 24 24 C 1.39790 * 107.07649 * 180.02562 * 23 22 21 25 25 C 1.35504 * 107.90873 * 359.73438 * 24 23 22 26 26 N 1.35755 * 108.90879 * 0.42913 * 25 24 23 27 27 H 0.96997 * 125.68824 * 179.82227 * 26 25 24 28 28 C 1.38240 * 119.99896 * 0.25331 * 15 14 13 29 29 C 1.38236 * 119.99533 * 359.49119 * 28 15 14 30 30 H 0.97003 * 119.99570 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99766 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47045 * 59.99889 * 10 9 7 33 33 H 1.09002 * 109.46830 * 299.99897 * 10 9 7 34 34 H 1.08998 * 109.47005 * 60.00031 * 11 10 9 35 35 H 1.09002 * 109.46827 * 300.00214 * 11 10 9 36 36 H 1.08007 * 120.00091 * 359.97438 * 13 12 11 37 37 H 1.08005 * 120.00137 * 179.97438 * 14 13 12 38 38 H 1.09005 * 109.46469 * 329.99894 * 16 15 14 39 39 H 1.08998 * 109.47062 * 210.00525 * 16 15 14 40 40 H 0.97008 * 120.00082 * 359.97438 * 17 16 15 41 41 H 1.08001 * 120.00212 * 8.38695 * 20 18 17 42 42 H 1.07999 * 119.99831 * 212.32202 * 21 20 18 43 43 H 1.08005 * 126.46089 * 0.03313 * 23 22 21 44 44 H 1.08003 * 126.04037 * 179.97438 * 24 23 22 45 45 H 1.07997 * 125.54283 * 180.26007 * 25 24 23 46 46 H 1.07996 * 120.00132 * 179.72727 * 28 15 14 47 47 H 1.07999 * 119.99814 * 180.24851 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0000 11 6 5.6163 -2.1915 0.0000 12 6 6.3697 -3.4967 -0.0006 13 6 6.7152 -4.0947 -1.1980 14 6 7.4068 -5.2916 -1.1986 15 6 7.7524 -5.8907 -0.0018 16 6 8.5058 -7.1959 -0.0023 17 7 9.9461 -6.9284 -0.0023 18 6 10.8219 -7.9528 -0.0032 19 8 10.4158 -9.1009 -0.0037 20 6 12.2132 -7.6943 -0.0038 21 6 13.0921 -8.7128 -0.1760 22 6 12.7441 -9.8186 -0.9904 23 6 13.4743 -10.9827 -1.1444 24 6 12.7668 -11.7965 -2.0340 25 6 11.6402 -11.1365 -2.3964 26 7 11.6172 -9.9305 -1.7736 27 1 10.9210 -9.2609 -1.8624 28 6 7.4018 -5.2956 1.1957 29 6 6.7149 -4.0960 1.1962 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3622 0.0004 32 1 3.8490 -3.0424 -0.8902 33 1 3.8483 -3.0428 0.8898 34 1 5.8796 -1.6200 0.8900 35 1 5.8796 -1.6199 -0.8900 36 1 6.4448 -3.6268 -2.1332 37 1 7.6764 -5.7591 -2.1341 38 1 8.2424 -7.7671 -0.8926 39 1 8.2424 -7.7679 0.8874 40 1 10.2695 -6.0138 -0.0023 41 1 12.5752 -6.6860 0.1330 42 1 14.0572 -8.6809 0.3078 43 1 14.4140 -11.2188 -0.6672 44 1 13.0636 -12.7792 -2.3696 45 1 10.8850 -11.5083 -3.0730 46 1 7.6680 -5.7659 2.1307 47 1 6.4445 -3.6290 2.1318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690793645.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:31 Heat of formation + Delta-G solvation = 60.192442 kcal Electronic energy + Delta-G solvation = -26740.584798 eV Core-core repulsion = 22889.427167 eV Total energy + Delta-G solvation = -3851.157631 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.23008 -40.87117 -40.17812 -37.38354 -36.12137 -34.67239 -34.33223 -32.90536 -31.87278 -31.82024 -30.47274 -29.10865 -27.13957 -25.23881 -24.07466 -23.67350 -23.07501 -21.85409 -21.65879 -21.24249 -20.69526 -19.71251 -19.12798 -17.59412 -17.25513 -16.86042 -16.72416 -16.15972 -15.94710 -15.87848 -15.78028 -15.22469 -15.07985 -15.02070 -14.84332 -14.75613 -14.36968 -14.23357 -14.00185 -13.84112 -13.67684 -13.51584 -13.13321 -13.11961 -12.96491 -12.85432 -12.60927 -12.39835 -12.07632 -11.93789 -11.83177 -11.80490 -11.15545 -11.00338 -10.72637 -10.16610 -9.85209 -9.73309 -9.58410 -9.34481 -8.45536 -8.05443 -5.40544 -0.43179 0.23772 0.47613 1.37072 1.41632 1.49159 1.66647 2.02679 2.31336 2.46638 2.47044 2.60309 2.90925 3.25765 3.50548 3.68374 3.84644 4.10196 4.12584 4.14587 4.15643 4.18738 4.34643 4.37354 4.45752 4.48181 4.52074 4.54149 4.66641 4.68781 4.71284 4.75553 5.03892 5.06220 5.06819 5.13124 5.21237 5.21684 5.36045 5.40008 5.43220 5.45307 5.59150 5.71814 5.74280 6.03973 6.04790 6.18035 6.20559 6.56969 6.67274 7.04683 7.23060 7.79225 8.00380 9.16028 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.036305 B = 0.001475 C = 0.001455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.062914 B =18980.853781 C =19242.921314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.064 4.064 3 Si 0.961 3.039 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.248 1.248 7 C -0.243 4.243 8 H 0.052 0.948 9 N -0.759 5.759 10 C 0.163 3.837 11 C -0.083 4.083 12 C -0.073 4.073 13 C -0.124 4.124 14 C -0.097 4.097 15 C -0.115 4.115 16 C 0.171 3.829 17 N -0.712 5.712 18 C 0.540 3.460 19 O -0.592 6.592 20 C -0.302 4.302 21 C 0.055 3.945 22 C -0.024 4.024 23 C -0.152 4.152 24 C -0.232 4.232 25 C 0.010 3.990 26 N -0.518 5.518 27 H 0.415 0.585 28 C -0.099 4.099 29 C -0.125 4.125 30 H 0.259 0.741 31 H 0.368 0.632 32 H 0.021 0.979 33 H 0.019 0.981 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.130 0.870 37 H 0.139 0.861 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.413 0.587 41 H 0.162 0.838 42 H 0.178 0.822 43 H 0.161 0.839 44 H 0.153 0.847 45 H 0.184 0.816 46 H 0.136 0.864 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.292 -18.758 -2.526 39.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.255 4.255 3 Si 0.787 3.213 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.173 1.173 7 C -0.374 4.374 8 H 0.070 0.930 9 N -0.405 5.405 10 C 0.037 3.963 11 C -0.120 4.120 12 C -0.073 4.073 13 C -0.142 4.142 14 C -0.116 4.116 15 C -0.115 4.115 16 C 0.047 3.953 17 N -0.363 5.363 18 C 0.334 3.666 19 O -0.477 6.477 20 C -0.324 4.324 21 C 0.034 3.966 22 C -0.135 4.135 23 C -0.178 4.178 24 C -0.256 4.256 25 C -0.128 4.128 26 N -0.114 5.114 27 H 0.257 0.743 28 C -0.118 4.118 29 C -0.143 4.143 30 H 0.068 0.932 31 H 0.202 0.798 32 H 0.039 0.961 33 H 0.037 0.963 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.148 0.852 37 H 0.157 0.843 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.249 0.751 41 H 0.180 0.820 42 H 0.195 0.805 43 H 0.178 0.822 44 H 0.170 0.830 45 H 0.201 0.799 46 H 0.153 0.847 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 33.642 -19.488 -2.522 38.960 hybrid contribution -0.837 1.691 0.083 1.889 sum 32.805 -17.796 -2.439 37.401 Atomic orbital electron populations 1.69902 1.07292 1.26882 1.59310 1.25591 0.96204 1.01574 1.02170 0.85326 0.78693 0.78969 0.78288 1.20146 1.22098 1.17263 1.19035 0.82801 0.93506 1.42077 0.93008 1.42705 1.02506 1.04209 1.91081 1.20690 0.90400 0.87275 0.97960 1.20706 0.92687 0.94900 1.03753 1.19895 0.97238 0.96195 0.94018 1.21246 0.98865 0.96248 0.97873 1.21194 0.97408 0.94822 0.98152 1.19794 1.01428 0.96748 0.93556 1.20015 0.79437 0.93265 1.02551 1.46034 1.05706 1.10033 1.74486 1.17604 0.88073 0.84573 0.76329 1.90856 1.81478 1.22067 1.53300 1.21969 0.91592 1.01753 1.17084 1.21264 1.00403 0.87867 0.87032 1.18743 0.91386 1.00110 1.03284 1.21895 1.01531 0.92866 1.01477 1.21170 0.97132 1.02246 1.05025 1.22609 1.01423 0.86616 1.02146 1.42736 1.18741 1.15909 1.33977 0.74284 1.21196 0.97508 0.94869 0.98201 1.21236 0.98951 0.96185 0.97918 0.93215 0.79819 0.96117 0.96282 0.90209 0.90018 0.85188 0.84291 0.90867 0.91485 0.75103 0.82045 0.80482 0.82161 0.82976 0.79906 0.84650 0.85356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.59 13.97 21.65 0.30 -63.29 16 2 C -0.06 -3.80 5.50 84.86 0.47 -3.33 16 3 Si 0.96 45.06 27.74 68.60 1.90 46.96 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.25 -10.35 6.52 99.48 0.65 -9.70 16 7 C -0.24 -14.19 10.47 84.03 0.88 -13.31 16 8 H 0.05 3.34 8.06 -2.91 -0.02 3.31 16 9 N -0.76 -35.77 5.41 -343.45 -1.86 -37.63 16 10 C 0.16 6.22 6.24 86.38 0.54 6.76 16 11 C -0.08 -2.31 5.46 29.85 0.16 -2.14 16 12 C -0.07 -1.74 5.13 -19.87 -0.10 -1.84 16 13 C -0.12 -2.63 9.70 22.27 0.22 -2.42 16 14 C -0.10 -1.70 9.70 22.27 0.22 -1.49 16 15 C -0.11 -1.93 5.25 -19.86 -0.10 -2.03 16 16 C 0.17 2.65 5.80 85.64 0.50 3.14 16 17 N -0.71 -9.36 5.54 -475.97 -2.64 -11.99 16 18 C 0.54 8.93 6.32 85.05 0.54 9.47 16 19 O -0.59 -14.01 12.73 -4.60 -0.06 -14.07 16 20 C -0.30 -3.49 9.72 22.47 0.22 -3.27 16 21 C 0.05 0.63 9.76 22.51 0.22 0.85 16 22 C -0.02 -0.40 5.95 39.08 0.23 -0.17 16 23 C -0.15 -2.30 10.86 22.65 0.25 -2.05 16 24 C -0.23 -3.52 10.81 22.01 0.24 -3.28 16 25 C 0.01 0.16 11.90 83.45 0.99 1.15 16 26 N -0.52 -9.12 4.51 -187.34 -0.84 -9.97 16 27 H 0.42 7.35 6.14 -92.71 -0.57 6.78 16 28 C -0.10 -1.81 9.70 22.27 0.22 -1.60 16 29 C -0.12 -2.71 9.70 22.27 0.22 -2.49 16 30 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 31 H 0.37 16.14 5.53 -92.71 -0.51 15.63 16 32 H 0.02 0.82 8.14 -2.39 -0.02 0.81 16 33 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 2.11 8.09 -2.39 -0.02 2.09 16 35 H 0.08 2.13 8.08 -2.39 -0.02 2.11 16 36 H 0.13 2.57 8.06 -2.91 -0.02 2.54 16 37 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 38 H 0.07 1.16 8.09 -2.38 -0.02 1.14 16 39 H 0.07 1.18 8.08 -2.39 -0.02 1.16 16 40 H 0.41 3.88 8.42 -92.70 -0.78 3.09 16 41 H 0.16 0.92 8.06 -2.91 -0.02 0.89 16 42 H 0.18 0.77 8.06 -2.91 -0.02 0.74 16 43 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 44 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 45 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 46 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 47 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -76.91 396.20 1.78 -75.14 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: -0.92 Total: 32.90 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 5.89 Total: -18.05 kcal Atomic # 7 Polarization: -117.84 SS G_CDS: -5.03 Total: -122.87 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.06 Total: -14.07 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.90 Total: 46.96 kcal Total: -76.91 1.78 -75.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690793645.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.330 kcal (2) G-P(sol) polarization free energy of solvation -76.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds