Wall clock time and date at job start Tue Mar 31 2020 22:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00479 * 2 1 4 4 H 1.48497 * 109.47015 * 272.02182 * 3 2 1 5 5 H 1.48496 * 109.46751 * 32.02075 * 3 2 1 6 6 H 1.48497 * 109.46887 * 152.02217 * 3 2 1 7 7 C 1.38819 * 119.99469 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00428 * 336.83287 * 7 2 1 9 9 N 1.36935 * 119.99590 * 156.82885 * 7 2 1 10 10 C 1.46506 * 120.00362 * 320.88777 * 9 7 2 11 11 C 1.52998 * 109.46904 * 270.00155 * 10 9 7 12 12 N 1.46506 * 109.46904 * 179.97438 * 11 10 9 13 13 C 1.34772 * 119.99748 * 180.02562 * 12 11 10 14 14 O 1.21730 * 120.00141 * 359.97438 * 13 12 11 15 15 C 1.46399 * 119.99604 * 180.02562 * 13 12 11 16 16 N 1.37623 * 126.32919 * 0.02562 * 15 13 12 17 17 H 0.97000 * 125.55364 * 359.97330 * 16 15 13 18 18 C 1.35646 * 108.90055 * 179.97438 * 16 15 13 19 19 C 1.35122 * 109.22120 * 0.02562 * 18 16 15 20 20 C 1.39101 * 126.32200 * 179.71229 * 15 13 12 21 21 C 1.48180 * 126.63794 * 0.03059 * 20 15 13 22 22 C 1.39447 * 120.12512 * 309.72140 * 21 20 15 23 23 C 1.37993 * 119.86110 * 179.78763 * 22 21 20 24 24 C 1.38349 * 120.13106 * 0.46829 * 23 22 21 25 25 C 1.38339 * 120.26540 * 359.79179 * 24 23 22 26 26 C 1.37990 * 120.13065 * 359.96790 * 25 24 23 27 27 C 1.46500 * 119.99795 * 140.88791 * 9 7 2 28 28 C 1.52999 * 117.50101 * 4.01666 * 27 9 7 29 29 C 1.53000 * 117.49710 * 295.39385 * 27 9 7 30 30 H 0.97008 * 119.99495 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.47133 * 149.99651 * 10 9 7 32 32 H 1.09005 * 109.46712 * 30.00058 * 10 9 7 33 33 H 1.09001 * 109.46916 * 299.99648 * 11 10 9 34 34 H 1.08998 * 109.47637 * 59.99805 * 11 10 9 35 35 H 0.96997 * 119.99609 * 359.97438 * 12 11 10 36 36 H 1.08000 * 125.38766 * 179.97438 * 18 16 15 37 37 H 1.07998 * 126.09879 * 179.97438 * 19 18 16 38 38 H 1.08001 * 120.07114 * 0.02562 * 22 21 20 39 39 H 1.07997 * 119.93937 * 180.25530 * 23 22 21 40 40 H 1.08000 * 119.86378 * 179.75917 * 24 23 22 41 41 H 1.08002 * 119.93755 * 180.02562 * 25 24 23 42 42 H 1.08001 * 120.06556 * 180.02562 * 26 25 24 43 43 H 1.09002 * 115.55205 * 149.72460 * 27 9 7 44 44 H 1.09000 * 117.49751 * 359.97438 * 28 27 9 45 45 H 1.08992 * 117.50043 * 145.02438 * 28 27 9 46 46 H 1.09007 * 117.49812 * 214.98112 * 29 27 9 47 47 H 1.08992 * 117.50178 * 359.97438 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4551 2.0710 -1.3992 5 1 1.4699 2.6399 0.7424 6 1 3.5686 1.4280 0.6568 7 6 2.0102 -1.2023 0.0005 8 1 1.5355 -2.0997 0.3689 9 7 3.2967 -1.2503 -0.4661 10 6 3.6778 -0.4693 -1.6456 11 6 3.4608 -1.3097 -2.9055 12 7 3.8414 -0.5284 -4.0851 13 6 3.7332 -1.0689 -5.3149 14 8 3.3197 -2.2063 -5.4456 15 6 4.1140 -0.2884 -6.4935 16 7 4.5959 1.0007 -6.4968 17 1 4.7414 1.5505 -5.7111 18 6 4.8343 1.3773 -7.7780 19 6 4.5165 0.3591 -8.6074 20 6 4.0614 -0.7150 -7.8164 21 6 3.6104 -2.0408 -8.3008 22 6 4.1271 -3.2057 -7.7345 23 6 3.7000 -4.4374 -8.1868 24 6 2.7683 -4.5181 -9.2063 25 6 2.2562 -3.3659 -9.7756 26 6 2.6720 -2.1285 -9.3284 27 6 4.2919 -2.0828 0.2142 28 6 3.8112 -2.9467 1.3818 29 6 4.6659 -1.7062 1.6492 30 1 -0.4850 0.8402 -0.0004 31 1 4.7287 -0.1894 -1.5719 32 1 3.0651 0.4306 -1.6989 33 1 4.0736 -2.2095 -2.8521 34 1 2.4100 -1.5895 -2.9792 35 1 4.1706 0.3780 -3.9808 36 1 5.2167 2.3392 -8.0862 37 1 4.6004 0.3657 -9.6841 38 1 4.8572 -3.1439 -6.9411 39 1 4.0963 -5.3404 -7.7463 40 1 2.4399 -5.4844 -9.5596 41 1 1.5288 -3.4350 -10.5709 42 1 2.2711 -1.2297 -9.7733 43 1 5.0794 -2.4880 -0.4213 44 1 2.7545 -2.8954 1.6441 45 1 4.2822 -3.9206 1.5146 46 1 5.6994 -1.8641 1.9579 47 1 4.1718 -0.8390 2.0870 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691232797.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:33 Heat of formation + Delta-G solvation = 91.164144 kcal Electronic energy + Delta-G solvation = -28589.296066 eV Core-core repulsion = 24739.481468 eV Total energy + Delta-G solvation = -3849.814597 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.43661 -38.88295 -38.66562 -37.37738 -35.02387 -33.36146 -32.54195 -31.48986 -30.78288 -30.15074 -28.88844 -27.55615 -24.45880 -23.45926 -22.52678 -22.41260 -21.68052 -21.41844 -20.52792 -19.78343 -19.34151 -18.88962 -16.64356 -16.42539 -15.84319 -15.78650 -15.61556 -15.28588 -14.94669 -14.87099 -14.62131 -14.05540 -13.80097 -13.77175 -13.52296 -13.26643 -13.04579 -12.86682 -12.82799 -12.57911 -12.33103 -12.23111 -11.94483 -11.71313 -11.08401 -10.95792 -10.93286 -10.80466 -10.50029 -10.13305 -10.04781 -9.88750 -9.59339 -9.49983 -9.37510 -8.85052 -8.72139 -8.62018 -8.54292 -7.99275 -6.87118 -6.13830 -3.57924 1.08316 1.60964 1.71109 2.62850 2.91524 3.11483 3.30656 3.33927 3.38945 3.47980 4.00413 4.36771 4.68993 4.72182 4.80386 4.92813 4.96824 5.05257 5.12303 5.15193 5.25250 5.26637 5.56494 5.63439 5.66553 5.69400 5.72163 5.73788 5.92249 5.97071 5.99734 6.09557 6.13857 6.20797 6.37337 6.38187 6.44632 6.51393 6.55619 6.60732 6.66277 6.73015 6.75740 6.84671 6.88126 7.05943 7.14755 7.18981 7.67213 7.91370 8.29121 8.36689 8.83901 9.55257 9.94101 11.00654 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012644 B = 0.002930 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.029356 B = 9552.861173 C =10364.740399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.042 3.958 3 Si 0.873 3.127 4 H -0.286 1.286 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.275 4.275 8 H 0.085 0.915 9 N -0.567 5.567 10 C 0.129 3.871 11 C 0.103 3.897 12 N -0.726 5.726 13 C 0.578 3.422 14 O -0.515 6.515 15 C -0.034 4.034 16 N -0.539 5.539 17 H 0.418 0.582 18 C 0.020 3.980 19 C -0.196 4.196 20 C -0.048 4.048 21 C -0.016 4.016 22 C -0.063 4.063 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.130 4.130 26 C -0.106 4.106 27 C 0.117 3.883 28 C -0.186 4.186 29 C -0.222 4.222 30 H 0.265 0.735 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.388 0.612 36 H 0.171 0.829 37 H 0.144 0.856 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.093 0.907 44 H 0.104 0.896 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.808 1.034 -17.092 20.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.160 4.160 3 Si 0.703 3.297 4 H -0.215 1.215 5 H -0.227 1.227 6 H -0.191 1.191 7 C -0.404 4.404 8 H 0.102 0.898 9 N -0.285 5.285 10 C 0.002 3.998 11 C -0.022 4.022 12 N -0.377 5.377 13 C 0.364 3.636 14 O -0.391 6.391 15 C -0.148 4.148 16 N -0.135 5.135 17 H 0.255 0.745 18 C -0.115 4.115 19 C -0.220 4.220 20 C -0.057 4.057 21 C -0.017 4.017 22 C -0.081 4.081 23 C -0.143 4.143 24 C -0.140 4.140 25 C -0.148 4.148 26 C -0.124 4.124 27 C 0.009 3.991 28 C -0.224 4.224 29 C -0.263 4.263 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.220 0.780 36 H 0.189 0.811 37 H 0.162 0.838 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.110 0.890 44 H 0.122 0.878 45 H 0.096 0.904 46 H 0.092 0.908 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.307 0.355 -16.969 20.395 hybrid contribution 0.523 1.915 0.612 2.078 sum 11.831 2.270 -16.357 20.314 Atomic orbital electron populations 1.69879 1.06009 1.26942 1.50014 1.25523 0.95050 0.97736 0.97673 0.87039 0.80909 0.84788 0.76961 1.21470 1.22664 1.19068 1.18743 0.86279 0.94694 1.40637 0.89752 1.43500 1.07366 1.52157 1.25526 1.21370 0.98085 0.94537 0.85774 1.22280 1.01861 0.94993 0.83102 1.46024 1.67132 1.17871 1.06662 1.16993 0.78712 0.86275 0.81574 1.90893 1.45595 1.17251 1.85341 1.20656 1.12489 0.86386 0.95247 1.41995 1.50292 1.12423 1.08743 0.74458 1.21880 1.06215 1.00732 0.82701 1.20879 1.08722 0.93023 0.99386 1.18557 1.02941 0.93925 0.90276 1.18067 0.96890 0.90681 0.96026 1.21113 0.98692 0.91391 0.96953 1.21031 0.98317 0.97538 0.97384 1.21130 0.97583 0.98161 0.97085 1.20958 1.00663 0.92477 1.00729 1.21103 0.97035 0.97576 0.96720 1.21188 0.93942 0.97282 0.86662 1.23066 1.01181 0.93498 1.04683 1.23369 0.98427 0.99677 1.04810 0.92484 0.93616 0.92004 0.91882 0.90279 0.78010 0.81132 0.83804 0.86325 0.86331 0.86545 0.86388 0.86322 0.88970 0.87810 0.90351 0.90759 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.97 55.49 0.78 -25.45 16 2 C 0.04 1.16 5.28 -17.43 -0.09 1.07 16 3 Si 0.87 20.85 25.32 -169.99 -4.30 16.55 16 4 H -0.29 -6.43 6.52 56.52 0.37 -6.06 16 5 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.28 -7.31 8.93 -15.06 -0.13 -7.44 16 8 H 0.09 2.45 6.85 -52.49 -0.36 2.09 16 9 N -0.57 -12.72 2.38 -165.66 -0.39 -13.11 16 10 C 0.13 2.54 4.68 -4.04 -0.02 2.52 16 11 C 0.10 1.92 6.00 -4.04 -0.02 1.89 16 12 N -0.73 -11.23 5.55 -61.70 -0.34 -11.57 16 13 C 0.58 9.56 7.76 -12.98 -0.10 9.46 16 14 O -0.52 -10.20 13.43 5.16 0.07 -10.13 16 15 C -0.03 -0.46 7.07 -81.66 -0.58 -1.04 16 16 N -0.54 -5.24 5.98 -9.24 -0.06 -5.29 16 17 H 0.42 2.93 8.18 -40.82 -0.33 2.59 16 18 C 0.02 0.17 11.86 -16.97 -0.20 -0.04 16 19 C -0.20 -2.05 10.73 -39.67 -0.43 -2.47 16 20 C -0.05 -0.66 5.67 -104.47 -0.59 -1.25 16 21 C -0.02 -0.23 5.27 -104.92 -0.55 -0.78 16 22 C -0.06 -0.93 7.63 -39.22 -0.30 -1.23 16 23 C -0.12 -1.65 10.03 -39.63 -0.40 -2.04 16 24 C -0.12 -1.45 10.04 -39.50 -0.40 -1.85 16 25 C -0.13 -1.53 10.03 -39.63 -0.40 -1.93 16 26 C -0.11 -1.36 9.73 -39.22 -0.38 -1.74 16 27 C 0.12 2.28 6.57 -67.93 -0.45 1.84 16 28 C -0.19 -3.47 9.80 -26.73 -0.26 -3.73 16 29 C -0.22 -4.10 10.35 -26.73 -0.28 -4.37 16 30 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.05 0.78 8.07 -51.93 -0.42 0.36 16 32 H 0.06 1.33 3.45 -51.93 -0.18 1.15 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 35 H 0.39 4.79 7.60 -40.82 -0.31 4.48 16 36 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 38 H 0.12 1.82 7.36 -52.49 -0.39 1.43 16 39 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 40 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 44 H 0.10 2.19 6.44 -51.93 -0.33 1.86 16 45 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 LS Contribution 388.26 15.07 5.85 5.85 Total: -1.00 -33.02 388.26 -10.54 -43.56 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -6.57 Total: 12.74 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -5.58 Total: -13.16 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.02 Total: -55.42 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.07 Total: -10.13 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.30 Total: 16.55 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.02 -10.54 -43.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691232797.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.726 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds