Wall clock time and date at job start Tue Mar 31 2020 22:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00479 * 2 1 4 4 H 1.48497 * 109.47015 * 272.02182 * 3 2 1 5 5 H 1.48496 * 109.46751 * 32.02075 * 3 2 1 6 6 H 1.48497 * 109.46887 * 152.02217 * 3 2 1 7 7 C 1.38819 * 119.99469 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00428 * 336.83287 * 7 2 1 9 9 N 1.36935 * 119.99590 * 156.82885 * 7 2 1 10 10 C 1.46506 * 120.00362 * 320.88777 * 9 7 2 11 11 C 1.52998 * 109.46904 * 270.00155 * 10 9 7 12 12 N 1.46506 * 109.46904 * 179.97438 * 11 10 9 13 13 C 1.34772 * 119.99748 * 180.02562 * 12 11 10 14 14 O 1.21730 * 120.00141 * 359.97438 * 13 12 11 15 15 C 1.46399 * 119.99604 * 180.02562 * 13 12 11 16 16 N 1.37623 * 126.32919 * 0.02562 * 15 13 12 17 17 H 0.97000 * 125.55364 * 359.97330 * 16 15 13 18 18 C 1.35646 * 108.90055 * 179.97438 * 16 15 13 19 19 C 1.35122 * 109.22120 * 0.02562 * 18 16 15 20 20 C 1.39101 * 126.32200 * 179.71229 * 15 13 12 21 21 C 1.48180 * 126.63794 * 0.03059 * 20 15 13 22 22 C 1.39447 * 120.12512 * 309.72140 * 21 20 15 23 23 C 1.37993 * 119.86110 * 179.78763 * 22 21 20 24 24 C 1.38349 * 120.13106 * 0.46829 * 23 22 21 25 25 C 1.38339 * 120.26540 * 359.79179 * 24 23 22 26 26 C 1.37990 * 120.13065 * 359.96790 * 25 24 23 27 27 C 1.46500 * 119.99795 * 140.88791 * 9 7 2 28 28 C 1.52999 * 117.50101 * 4.01666 * 27 9 7 29 29 C 1.53000 * 117.49710 * 295.39385 * 27 9 7 30 30 H 0.97008 * 119.99495 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.47133 * 149.99651 * 10 9 7 32 32 H 1.09005 * 109.46712 * 30.00058 * 10 9 7 33 33 H 1.09001 * 109.46916 * 299.99648 * 11 10 9 34 34 H 1.08998 * 109.47637 * 59.99805 * 11 10 9 35 35 H 0.96997 * 119.99609 * 359.97438 * 12 11 10 36 36 H 1.08000 * 125.38766 * 179.97438 * 18 16 15 37 37 H 1.07998 * 126.09879 * 179.97438 * 19 18 16 38 38 H 1.08001 * 120.07114 * 0.02562 * 22 21 20 39 39 H 1.07997 * 119.93937 * 180.25530 * 23 22 21 40 40 H 1.08000 * 119.86378 * 179.75917 * 24 23 22 41 41 H 1.08002 * 119.93755 * 180.02562 * 25 24 23 42 42 H 1.08001 * 120.06556 * 180.02562 * 26 25 24 43 43 H 1.09002 * 115.55205 * 149.72460 * 27 9 7 44 44 H 1.09000 * 117.49751 * 359.97438 * 28 27 9 45 45 H 1.08992 * 117.50043 * 145.02438 * 28 27 9 46 46 H 1.09007 * 117.49812 * 214.98112 * 29 27 9 47 47 H 1.08992 * 117.50178 * 359.97438 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4551 2.0710 -1.3992 5 1 1.4699 2.6399 0.7424 6 1 3.5686 1.4280 0.6568 7 6 2.0102 -1.2023 0.0005 8 1 1.5355 -2.0997 0.3689 9 7 3.2967 -1.2503 -0.4661 10 6 3.6778 -0.4693 -1.6456 11 6 3.4608 -1.3097 -2.9055 12 7 3.8414 -0.5284 -4.0851 13 6 3.7332 -1.0689 -5.3149 14 8 3.3197 -2.2063 -5.4456 15 6 4.1140 -0.2884 -6.4935 16 7 4.5959 1.0007 -6.4968 17 1 4.7414 1.5505 -5.7111 18 6 4.8343 1.3773 -7.7780 19 6 4.5165 0.3591 -8.6074 20 6 4.0614 -0.7150 -7.8164 21 6 3.6104 -2.0408 -8.3008 22 6 4.1271 -3.2057 -7.7345 23 6 3.7000 -4.4374 -8.1868 24 6 2.7683 -4.5181 -9.2063 25 6 2.2562 -3.3659 -9.7756 26 6 2.6720 -2.1285 -9.3284 27 6 4.2919 -2.0828 0.2142 28 6 3.8112 -2.9467 1.3818 29 6 4.6659 -1.7062 1.6492 30 1 -0.4850 0.8402 -0.0004 31 1 4.7287 -0.1894 -1.5719 32 1 3.0651 0.4306 -1.6989 33 1 4.0736 -2.2095 -2.8521 34 1 2.4100 -1.5895 -2.9792 35 1 4.1706 0.3780 -3.9808 36 1 5.2167 2.3392 -8.0862 37 1 4.6004 0.3657 -9.6841 38 1 4.8572 -3.1439 -6.9411 39 1 4.0963 -5.3404 -7.7463 40 1 2.4399 -5.4844 -9.5596 41 1 1.5288 -3.4350 -10.5709 42 1 2.2711 -1.2297 -9.7733 43 1 5.0794 -2.4880 -0.4213 44 1 2.7545 -2.8954 1.6441 45 1 4.2822 -3.9206 1.5146 46 1 5.6994 -1.8641 1.9579 47 1 4.1718 -0.8390 2.0870 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691232797.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:32 Heat of formation + Delta-G solvation = 70.469041 kcal Electronic energy + Delta-G solvation = -28590.193473 eV Core-core repulsion = 24739.481468 eV Total energy + Delta-G solvation = -3850.712004 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.32945 -40.16494 -39.61433 -39.00290 -36.47123 -35.04740 -33.60098 -33.25047 -31.75568 -31.15165 -30.02360 -28.91943 -26.28995 -24.69368 -23.81819 -23.36395 -23.01368 -22.73233 -21.50869 -21.40007 -20.39635 -19.95673 -18.34050 -17.59409 -17.45366 -17.30625 -16.74185 -16.54601 -16.35907 -15.86914 -15.72457 -15.51265 -15.12868 -14.92493 -14.63254 -14.43608 -14.28523 -14.18461 -14.15517 -13.78857 -13.66789 -13.56739 -13.35384 -13.14451 -12.72776 -12.55460 -12.13422 -12.00915 -11.89924 -11.86520 -11.77722 -11.35912 -11.25636 -10.99938 -10.65556 -10.29244 -10.20407 -9.71055 -9.41420 -8.95481 -8.71550 -8.25076 -5.66866 0.07560 0.61488 0.76550 1.21794 1.38780 1.50197 1.82248 1.97650 2.19675 2.31447 2.36744 2.98173 3.01865 3.20130 3.30673 3.83625 3.95763 4.07255 4.10596 4.15062 4.18779 4.25342 4.32296 4.33608 4.36426 4.43284 4.44093 4.54119 4.67866 4.77989 4.80447 4.87624 4.93022 4.99717 5.05027 5.15690 5.20927 5.26242 5.26453 5.35020 5.52232 5.55957 5.67280 5.69997 5.78914 5.89327 5.89900 6.17418 6.19399 6.43710 6.58334 6.92237 7.13937 7.55308 7.95089 8.93902 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012644 B = 0.002930 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.029356 B = 9552.861173 C =10364.740399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.017 4.017 3 Si 0.941 3.059 4 H -0.260 1.260 5 H -0.311 1.311 6 H -0.254 1.254 7 C -0.262 4.262 8 H 0.041 0.959 9 N -0.581 5.581 10 C 0.131 3.869 11 C 0.122 3.878 12 N -0.716 5.716 13 C 0.576 3.424 14 O -0.559 6.559 15 C -0.070 4.070 16 N -0.526 5.526 17 H 0.432 0.568 18 C 0.055 3.945 19 C -0.213 4.213 20 C -0.061 4.061 21 C -0.037 4.037 22 C -0.086 4.086 23 C -0.140 4.140 24 C -0.127 4.127 25 C -0.131 4.131 26 C -0.116 4.116 27 C 0.102 3.898 28 C -0.191 4.191 29 C -0.205 4.205 30 H 0.263 0.737 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.406 0.594 36 H 0.221 0.779 37 H 0.163 0.837 38 H 0.100 0.900 39 H 0.128 0.872 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.135 0.865 43 H 0.125 0.875 44 H 0.066 0.934 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.827 3.138 -19.061 24.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.214 4.214 3 Si 0.768 3.232 4 H -0.186 1.186 5 H -0.239 1.239 6 H -0.178 1.178 7 C -0.392 4.392 8 H 0.058 0.942 9 N -0.301 5.301 10 C 0.005 3.995 11 C -0.004 4.004 12 N -0.368 5.368 13 C 0.364 3.636 14 O -0.438 6.438 15 C -0.184 4.184 16 N -0.123 5.123 17 H 0.272 0.728 18 C -0.081 4.081 19 C -0.236 4.236 20 C -0.070 4.070 21 C -0.037 4.037 22 C -0.105 4.105 23 C -0.158 4.158 24 C -0.144 4.144 25 C -0.149 4.149 26 C -0.134 4.134 27 C -0.005 4.005 28 C -0.229 4.229 29 C -0.245 4.245 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.241 0.759 36 H 0.237 0.763 37 H 0.181 0.819 38 H 0.118 0.882 39 H 0.146 0.854 40 H 0.161 0.839 41 H 0.165 0.835 42 H 0.153 0.847 43 H 0.143 0.857 44 H 0.085 0.915 45 H 0.129 0.871 46 H 0.132 0.868 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.389 2.485 -18.929 23.907 hybrid contribution -0.406 1.149 1.150 1.676 sum 13.983 3.633 -17.779 22.909 Atomic orbital electron populations 1.70031 1.07990 1.27625 1.53073 1.26174 0.95607 1.01506 0.98137 0.85936 0.79429 0.79627 0.78214 1.18635 1.23931 1.17785 1.18531 0.88074 0.93251 1.39337 0.94167 1.43588 1.06595 1.52980 1.26891 1.21418 0.99875 0.93432 0.84765 1.21785 0.98932 0.95398 0.84281 1.45763 1.67062 1.18445 1.05565 1.17413 0.77769 0.86031 0.82353 1.90864 1.47609 1.19305 1.86021 1.20158 1.15955 0.88283 0.93971 1.41986 1.49263 1.11012 1.10062 0.72826 1.22662 1.02515 1.01571 0.81392 1.21187 1.09335 0.92556 1.00565 1.18878 1.02828 0.94371 0.90961 1.18371 0.97547 0.91163 0.96652 1.21111 0.99449 0.92607 0.97306 1.21282 0.98952 0.97465 0.98086 1.21476 0.96877 0.99653 0.96437 1.21361 1.00600 0.91979 1.00981 1.21386 0.96750 0.98826 0.96465 1.21533 0.94157 0.97303 0.87538 1.23042 0.99618 0.95520 1.04683 1.23337 0.99975 0.98110 1.03088 0.92758 0.89600 0.93506 0.91936 0.95091 0.75909 0.76267 0.81941 0.88219 0.85374 0.83931 0.83492 0.84686 0.85703 0.91511 0.87090 0.86842 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.52 13.97 21.65 0.30 -58.22 16 2 C -0.02 -0.97 5.28 84.86 0.45 -0.53 16 3 Si 0.94 43.34 25.32 68.60 1.74 45.07 16 4 H -0.26 -10.75 6.52 99.48 0.65 -10.10 16 5 H -0.31 -14.83 7.11 99.48 0.71 -14.12 16 6 H -0.25 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.26 -14.53 8.93 84.04 0.75 -13.78 16 8 H 0.04 2.53 6.85 -2.91 -0.02 2.51 16 9 N -0.58 -26.02 2.38 -678.02 -1.61 -27.63 16 10 C 0.13 4.97 4.68 86.38 0.40 5.38 16 11 C 0.12 4.62 6.00 86.38 0.52 5.14 16 12 N -0.72 -21.84 5.55 -467.33 -2.59 -24.44 16 13 C 0.58 19.41 7.76 86.37 0.67 20.08 16 14 O -0.56 -23.40 13.43 -4.45 -0.06 -23.46 16 15 C -0.07 -1.88 7.07 40.57 0.29 -1.59 16 16 N -0.53 -8.66 5.98 -183.13 -1.10 -9.76 16 17 H 0.43 4.50 8.18 -92.71 -0.76 3.74 16 18 C 0.05 0.69 11.86 83.39 0.99 1.68 16 19 C -0.21 -3.87 10.73 22.22 0.24 -3.64 16 20 C -0.06 -1.62 5.67 -19.77 -0.11 -1.73 16 21 C -0.04 -1.08 5.27 -20.05 -0.11 -1.18 16 22 C -0.09 -2.69 7.63 22.50 0.17 -2.52 16 23 C -0.14 -3.81 10.03 22.24 0.22 -3.59 16 24 C -0.13 -2.93 10.04 22.32 0.22 -2.71 16 25 C -0.13 -2.93 10.03 22.24 0.22 -2.70 16 26 C -0.12 -2.91 9.73 22.50 0.22 -2.69 16 27 C 0.10 3.79 6.57 44.99 0.30 4.08 16 28 C -0.19 -7.01 9.80 30.59 0.30 -6.71 16 29 C -0.20 -7.10 10.35 30.59 0.32 -6.78 16 30 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16 31 H 0.09 2.61 8.07 -2.39 -0.02 2.60 16 32 H 0.05 1.93 3.45 -2.38 -0.01 1.93 16 33 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.41 9.22 7.60 -92.71 -0.70 8.52 16 36 H 0.22 0.60 8.06 -2.91 -0.02 0.57 16 37 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 38 H 0.10 3.35 7.36 -2.91 -0.02 3.32 16 39 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 40 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 41 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 42 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 43 H 0.13 3.86 8.14 -2.39 -0.02 3.84 16 44 H 0.07 2.97 6.44 -2.39 -0.02 2.95 16 45 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 46 H 0.11 3.07 8.14 -2.38 -0.02 3.05 16 47 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -79.00 388.26 2.22 -76.77 By element: Atomic # 1 Polarization: 35.94 SS G_CDS: -0.51 Total: 35.43 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 6.06 Total: -13.77 kcal Atomic # 7 Polarization: -115.04 SS G_CDS: -5.00 Total: -120.04 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.06 Total: -23.46 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.74 Total: 45.07 kcal Total: -79.00 2.22 -76.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691232797.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.241 kcal (2) G-P(sol) polarization free energy of solvation -78.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds