Wall clock time and date at job start Tue Mar 31 2020 22:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00156 * 2 1 4 4 H 1.48491 * 109.47347 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47430 * 300.00611 * 3 2 1 6 6 H 1.48507 * 109.47042 * 60.00353 * 3 2 1 7 7 C 1.38811 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00009 * 160.27474 * 7 2 1 9 9 N 1.36934 * 120.00015 * 340.27455 * 7 2 1 10 10 C 1.46501 * 120.00392 * 320.54003 * 9 7 2 11 11 C 1.53001 * 109.46907 * 270.00173 * 10 9 7 12 12 N 1.46502 * 109.47287 * 179.97438 * 11 10 9 13 13 C 1.34775 * 120.00009 * 179.97438 * 12 11 10 14 14 O 1.21712 * 120.00328 * 359.97438 * 13 12 11 15 15 C 1.46587 * 119.99841 * 179.97438 * 13 12 11 16 16 C 1.38051 * 126.00651 * 179.68730 * 15 13 12 17 17 C 1.39356 * 107.44136 * 179.84722 * 16 15 13 18 18 C 1.37827 * 107.65829 * 0.41975 * 17 16 15 19 19 C 1.47806 * 125.83043 * 179.74079 * 18 17 16 20 20 C 1.39585 * 120.14808 * 179.72417 * 19 18 17 21 21 C 1.37956 * 119.85149 * 179.74668 * 20 19 18 22 22 C 1.38356 * 120.14569 * 0.53218 * 21 20 19 23 23 C 1.38367 * 120.29553 * 359.73955 * 22 21 20 24 24 C 1.37948 * 120.14588 * 359.97438 * 23 22 21 25 25 N 1.36417 * 108.34575 * 359.74128 * 18 17 16 26 26 H 0.96992 * 125.71320 * 179.97438 * 25 18 17 27 27 C 1.46505 * 120.00252 * 140.53458 * 9 7 2 28 28 C 1.52998 * 117.49323 * 3.29117 * 27 9 7 29 29 C 1.52996 * 60.00019 * 252.50921 * 28 27 9 30 30 H 0.97007 * 120.00064 * 355.00953 * 1 2 3 31 31 H 1.08999 * 109.46960 * 29.99737 * 10 9 7 32 32 H 1.08998 * 109.47735 * 150.00011 * 10 9 7 33 33 H 1.09008 * 109.46851 * 299.99429 * 11 10 9 34 34 H 1.09004 * 109.47488 * 59.99381 * 11 10 9 35 35 H 0.97005 * 119.99630 * 359.97438 * 12 11 10 36 36 H 1.08004 * 126.27487 * 359.97179 * 16 15 13 37 37 H 1.08003 * 126.17915 * 180.16508 * 17 16 15 38 38 H 1.08001 * 120.07381 * 0.02562 * 20 19 18 39 39 H 1.08002 * 119.92857 * 180.29901 * 21 20 19 40 40 H 1.08008 * 119.85412 * 179.76560 * 22 21 20 41 41 H 1.08004 * 119.92501 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.07156 * 180.02562 * 24 23 22 43 43 H 1.08997 * 115.55452 * 148.99459 * 27 9 7 44 44 H 1.08997 * 117.50310 * 359.97438 * 28 27 9 45 45 H 1.09007 * 117.49716 * 145.02112 * 28 27 9 46 46 H 1.09000 * 117.50217 * 252.51464 * 29 28 27 47 47 H 1.08997 * 117.52095 * 107.48552 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0426 -1.2295 -0.3162 9 7 1.3858 -2.3534 0.3992 10 6 0.4640 -2.3295 1.5376 11 6 1.2394 -2.6055 2.8274 12 7 0.3178 -2.5810 3.9660 13 6 0.7808 -2.8005 5.2126 14 8 1.9645 -3.0194 5.3924 15 6 -0.1413 -2.7754 6.3518 16 6 0.1957 -2.9885 7.6735 17 6 -0.9714 -2.8723 8.4261 18 6 -2.0048 -2.6000 7.5557 19 6 -3.4216 -2.4049 7.9288 20 6 -4.3735 -2.1275 6.9463 21 6 -5.6951 -1.9517 7.3007 22 6 -6.0760 -2.0388 8.6279 23 6 -5.1365 -2.3079 9.6075 24 6 -3.8127 -2.4916 9.2660 25 7 -1.4967 -2.5413 6.2910 26 1 -2.0053 -2.3646 5.4843 27 6 1.6394 -3.6091 -0.3116 28 6 2.6697 -3.5850 -1.4424 29 6 1.1794 -3.7018 -1.7679 30 1 -0.4850 0.8369 0.0731 31 1 -0.0097 -1.3499 1.6010 32 1 -0.3003 -3.0947 1.4024 33 1 1.7131 -3.5852 2.7640 34 1 2.0039 -1.8403 2.9627 35 1 -0.6257 -2.4069 3.8226 36 1 1.1832 -3.2036 8.0545 37 1 -1.0524 -2.9806 9.4977 38 1 -4.0767 -2.0553 5.9103 39 1 -6.4334 -1.7419 6.5409 40 1 -7.1114 -1.8966 8.9006 41 1 -5.4404 -2.3741 10.6418 42 1 -3.0805 -2.7020 10.0316 43 1 1.5777 -4.5131 0.2942 44 1 3.1586 -2.6349 -1.6578 45 1 3.2862 -4.4733 -1.5806 46 1 0.8153 -4.6670 -2.1201 47 1 0.6876 -2.8289 -2.1969 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691239408.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:12 Heat of formation + Delta-G solvation = 76.859502 kcal Electronic energy + Delta-G solvation = -27771.185399 eV Core-core repulsion = 23920.750506 eV Total energy + Delta-G solvation = -3850.434893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.43353 -39.30166 -38.60076 -37.12296 -34.86232 -33.29892 -32.31201 -31.77436 -31.02734 -30.68675 -28.73393 -27.26627 -24.61505 -23.60267 -23.02665 -22.03221 -21.42108 -21.23043 -20.45841 -19.93875 -19.75930 -18.76540 -17.08644 -16.31258 -15.92799 -15.60687 -15.45258 -15.20610 -15.09070 -14.65446 -14.48695 -14.28685 -14.07737 -13.84041 -13.67144 -13.50964 -13.04001 -12.82224 -12.70219 -12.64655 -12.51068 -11.98209 -11.63551 -11.61965 -11.33938 -11.11009 -10.80185 -10.76704 -10.38840 -10.21123 -9.96708 -9.83082 -9.74096 -9.67377 -9.32981 -9.30967 -9.16836 -8.71605 -8.56682 -7.79840 -6.65844 -5.90801 -3.57304 0.53838 1.05750 1.69612 2.64454 2.82316 3.27580 3.37555 3.39858 3.43319 3.54205 3.60053 4.33108 4.37241 4.49929 4.60780 4.77668 4.88321 4.94320 5.05785 5.13042 5.18012 5.22168 5.25005 5.28926 5.52981 5.66173 5.84670 5.86872 5.93235 5.97226 6.02169 6.11180 6.12108 6.16738 6.18825 6.24205 6.42990 6.47275 6.56399 6.59404 6.62609 6.71096 6.78408 6.90099 7.02195 7.16298 7.19480 7.38902 7.71213 7.76679 8.37787 8.41235 9.02840 9.63413 10.21238 11.04671 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012388 B = 0.002352 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.719060 B =11903.756953 C =12364.264625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.015 3.985 3 Si 0.896 3.104 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.260 4.260 8 H 0.067 0.933 9 N -0.547 5.547 10 C 0.141 3.859 11 C 0.098 3.902 12 N -0.720 5.720 13 C 0.580 3.420 14 O -0.532 6.532 15 C -0.030 4.030 16 C -0.112 4.112 17 C -0.183 4.183 18 C 0.074 3.926 19 C -0.016 4.016 20 C -0.121 4.121 21 C -0.111 4.111 22 C -0.123 4.123 23 C -0.114 4.114 24 C -0.101 4.101 25 N -0.530 5.530 26 H 0.416 0.584 27 C 0.118 3.882 28 C -0.194 4.194 29 C -0.219 4.219 30 H 0.254 0.746 31 H 0.098 0.902 32 H 0.032 0.968 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.390 0.610 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.118 0.882 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.763 -5.695 16.740 21.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.186 4.186 3 Si 0.725 3.275 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.213 1.213 7 C -0.389 4.389 8 H 0.084 0.916 9 N -0.263 5.263 10 C 0.014 3.986 11 C -0.026 4.026 12 N -0.370 5.370 13 C 0.366 3.634 14 O -0.408 6.408 15 C -0.145 4.145 16 C -0.138 4.138 17 C -0.207 4.207 18 C -0.042 4.042 19 C -0.017 4.017 20 C -0.140 4.140 21 C -0.129 4.129 22 C -0.141 4.141 23 C -0.132 4.132 24 C -0.120 4.120 25 N -0.126 5.126 26 H 0.254 0.746 27 C 0.009 3.991 28 C -0.232 4.232 29 C -0.260 4.260 30 H 0.064 0.936 31 H 0.116 0.884 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.223 0.777 36 H 0.168 0.832 37 H 0.163 0.837 38 H 0.136 0.864 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.148 0.852 43 H 0.105 0.895 44 H 0.116 0.884 45 H 0.093 0.907 46 H 0.088 0.912 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.026 -5.663 16.577 20.699 hybrid contribution -0.380 1.105 -0.615 1.320 sum -11.407 -4.558 15.963 20.142 Atomic orbital electron populations 1.70064 1.05537 1.26153 1.50783 1.25251 0.95074 0.98936 0.99302 0.86334 0.80023 0.83737 0.77383 1.19819 1.21501 1.21304 1.19100 0.93489 0.84877 1.41467 0.91560 1.43163 1.51003 1.03461 1.28719 1.21001 0.91064 1.02888 0.83618 1.22414 0.93441 1.01393 0.85394 1.46021 1.12210 1.71790 1.06936 1.17072 0.87083 0.77588 0.81678 1.90841 1.15533 1.49754 1.84715 1.20716 0.82433 1.14958 0.96388 1.21204 0.99292 1.02949 0.90320 1.21062 0.91215 1.09466 0.98976 1.19088 0.92578 1.08524 0.84030 1.18105 0.89250 1.00413 0.93928 1.21156 0.93332 1.00781 0.98697 1.21066 0.95725 0.99565 0.96575 1.21252 0.99720 1.00085 0.93047 1.21098 0.92885 0.99584 0.99637 1.21119 0.96378 0.99729 0.94755 1.42067 1.07597 1.54618 1.08312 0.74560 1.21251 1.00973 0.90303 0.86531 1.23026 0.92175 1.01960 1.06030 1.23339 0.96926 1.00998 1.04731 0.93590 0.88395 0.94991 0.92722 0.91222 0.77723 0.83151 0.83683 0.86381 0.85663 0.85915 0.85606 0.85247 0.89521 0.88385 0.90687 0.91221 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.88 11.50 55.49 0.64 -23.24 16 2 C 0.02 0.40 4.98 -17.43 -0.09 0.31 16 3 Si 0.90 21.00 29.60 -169.99 -5.03 15.97 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.26 -6.74 8.47 -15.06 -0.13 -6.87 16 8 H 0.07 1.75 6.74 -52.49 -0.35 1.40 16 9 N -0.55 -12.89 2.75 -165.67 -0.46 -13.34 16 10 C 0.14 3.01 5.45 -4.04 -0.02 2.99 16 11 C 0.10 1.93 6.00 -4.04 -0.02 1.90 16 12 N -0.72 -11.70 5.55 -61.64 -0.34 -12.04 16 13 C 0.58 9.93 7.78 -12.89 -0.10 9.83 16 14 O -0.53 -11.03 16.87 5.18 0.09 -10.95 16 15 C -0.03 -0.43 7.04 -81.94 -0.58 -1.01 16 16 C -0.11 -1.47 10.60 -39.23 -0.42 -1.88 16 17 C -0.18 -2.02 10.22 -39.32 -0.40 -2.42 16 18 C 0.07 0.81 6.93 -82.06 -0.57 0.25 16 19 C -0.02 -0.16 5.87 -104.98 -0.62 -0.77 16 20 C -0.12 -1.08 9.70 -39.18 -0.38 -1.46 16 21 C -0.11 -0.87 10.03 -39.64 -0.40 -1.27 16 22 C -0.12 -0.87 10.04 -39.49 -0.40 -1.27 16 23 C -0.11 -0.81 10.03 -39.64 -0.40 -1.21 16 24 C -0.10 -0.83 9.56 -39.18 -0.37 -1.20 16 25 N -0.53 -6.01 5.90 -5.81 -0.03 -6.04 16 26 H 0.42 3.80 7.24 -40.82 -0.30 3.51 16 27 C 0.12 2.47 6.56 -67.93 -0.45 2.02 16 28 C -0.19 -3.78 9.80 -26.73 -0.26 -4.04 16 29 C -0.22 -4.38 10.36 -26.73 -0.28 -4.66 16 30 H 0.25 6.64 8.32 -40.82 -0.34 6.30 16 31 H 0.10 2.33 5.59 -51.93 -0.29 2.04 16 32 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 33 H 0.05 1.09 8.14 -51.92 -0.42 0.67 16 34 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.39 5.24 7.58 -40.82 -0.31 4.93 16 36 H 0.15 1.89 8.06 -52.48 -0.42 1.46 16 37 H 0.15 1.21 7.26 -52.48 -0.38 0.83 16 38 H 0.12 0.90 7.14 -52.49 -0.37 0.53 16 39 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 41 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 42 H 0.13 0.85 6.98 -52.49 -0.37 0.48 16 43 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 44 H 0.10 2.09 6.46 -51.93 -0.34 1.75 16 45 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 46 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.09 2.12 8.14 -51.93 -0.42 1.69 16 LS Contribution 395.39 15.07 5.96 5.96 Total: -1.00 -31.17 395.39 -11.54 -42.71 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -6.49 Total: 11.73 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -5.87 Total: -10.76 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.19 Total: -54.67 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.17 -11.54 -42.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691239408.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.570 kcal (2) G-P(sol) polarization free energy of solvation -31.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds