Wall clock time and date at job start Tue Mar 31 2020 22:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00156 * 2 1 4 4 H 1.48491 * 109.47347 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47430 * 300.00611 * 3 2 1 6 6 H 1.48507 * 109.47042 * 60.00353 * 3 2 1 7 7 C 1.38811 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00009 * 160.27474 * 7 2 1 9 9 N 1.36934 * 120.00015 * 340.27455 * 7 2 1 10 10 C 1.46501 * 120.00392 * 320.54003 * 9 7 2 11 11 C 1.53001 * 109.46907 * 270.00173 * 10 9 7 12 12 N 1.46502 * 109.47287 * 179.97438 * 11 10 9 13 13 C 1.34775 * 120.00009 * 179.97438 * 12 11 10 14 14 O 1.21712 * 120.00328 * 359.97438 * 13 12 11 15 15 C 1.46587 * 119.99841 * 179.97438 * 13 12 11 16 16 C 1.38051 * 126.00651 * 179.68730 * 15 13 12 17 17 C 1.39356 * 107.44136 * 179.84722 * 16 15 13 18 18 C 1.37827 * 107.65829 * 0.41975 * 17 16 15 19 19 C 1.47806 * 125.83043 * 179.74079 * 18 17 16 20 20 C 1.39585 * 120.14808 * 179.72417 * 19 18 17 21 21 C 1.37956 * 119.85149 * 179.74668 * 20 19 18 22 22 C 1.38356 * 120.14569 * 0.53218 * 21 20 19 23 23 C 1.38367 * 120.29553 * 359.73955 * 22 21 20 24 24 C 1.37948 * 120.14588 * 359.97438 * 23 22 21 25 25 N 1.36417 * 108.34575 * 359.74128 * 18 17 16 26 26 H 0.96992 * 125.71320 * 179.97438 * 25 18 17 27 27 C 1.46505 * 120.00252 * 140.53458 * 9 7 2 28 28 C 1.52998 * 117.49323 * 3.29117 * 27 9 7 29 29 C 1.52996 * 60.00019 * 252.50921 * 28 27 9 30 30 H 0.97007 * 120.00064 * 355.00953 * 1 2 3 31 31 H 1.08999 * 109.46960 * 29.99737 * 10 9 7 32 32 H 1.08998 * 109.47735 * 150.00011 * 10 9 7 33 33 H 1.09008 * 109.46851 * 299.99429 * 11 10 9 34 34 H 1.09004 * 109.47488 * 59.99381 * 11 10 9 35 35 H 0.97005 * 119.99630 * 359.97438 * 12 11 10 36 36 H 1.08004 * 126.27487 * 359.97179 * 16 15 13 37 37 H 1.08003 * 126.17915 * 180.16508 * 17 16 15 38 38 H 1.08001 * 120.07381 * 0.02562 * 20 19 18 39 39 H 1.08002 * 119.92857 * 180.29901 * 21 20 19 40 40 H 1.08008 * 119.85412 * 179.76560 * 22 21 20 41 41 H 1.08004 * 119.92501 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.07156 * 180.02562 * 24 23 22 43 43 H 1.08997 * 115.55452 * 148.99459 * 27 9 7 44 44 H 1.08997 * 117.50310 * 359.97438 * 28 27 9 45 45 H 1.09007 * 117.49716 * 145.02112 * 28 27 9 46 46 H 1.09000 * 117.50217 * 252.51464 * 29 28 27 47 47 H 1.08997 * 117.52095 * 107.48552 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0426 -1.2295 -0.3162 9 7 1.3858 -2.3534 0.3992 10 6 0.4640 -2.3295 1.5376 11 6 1.2394 -2.6055 2.8274 12 7 0.3178 -2.5810 3.9660 13 6 0.7808 -2.8005 5.2126 14 8 1.9645 -3.0194 5.3924 15 6 -0.1413 -2.7754 6.3518 16 6 0.1957 -2.9885 7.6735 17 6 -0.9714 -2.8723 8.4261 18 6 -2.0048 -2.6000 7.5557 19 6 -3.4216 -2.4049 7.9288 20 6 -4.3735 -2.1275 6.9463 21 6 -5.6951 -1.9517 7.3007 22 6 -6.0760 -2.0388 8.6279 23 6 -5.1365 -2.3079 9.6075 24 6 -3.8127 -2.4916 9.2660 25 7 -1.4967 -2.5413 6.2910 26 1 -2.0053 -2.3646 5.4843 27 6 1.6394 -3.6091 -0.3116 28 6 2.6697 -3.5850 -1.4424 29 6 1.1794 -3.7018 -1.7679 30 1 -0.4850 0.8369 0.0731 31 1 -0.0097 -1.3499 1.6010 32 1 -0.3003 -3.0947 1.4024 33 1 1.7131 -3.5852 2.7640 34 1 2.0039 -1.8403 2.9627 35 1 -0.6257 -2.4069 3.8226 36 1 1.1832 -3.2036 8.0545 37 1 -1.0524 -2.9806 9.4977 38 1 -4.0767 -2.0553 5.9103 39 1 -6.4334 -1.7419 6.5409 40 1 -7.1114 -1.8966 8.9006 41 1 -5.4404 -2.3741 10.6418 42 1 -3.0805 -2.7020 10.0316 43 1 1.5777 -4.5131 0.2942 44 1 3.1586 -2.6349 -1.6578 45 1 3.2862 -4.4733 -1.5806 46 1 0.8153 -4.6670 -2.1201 47 1 0.6876 -2.8289 -2.1969 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691239408.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:11 Heat of formation + Delta-G solvation = 59.942012 kcal Electronic energy + Delta-G solvation = -27771.918997 eV Core-core repulsion = 23920.750506 eV Total energy + Delta-G solvation = -3851.168491 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.39173 -40.38611 -39.51000 -38.81948 -36.40763 -35.04666 -33.14329 -32.77571 -32.43383 -31.52712 -30.04074 -28.59862 -26.37705 -24.65814 -23.70255 -23.41765 -22.91610 -22.39999 -21.61438 -21.45865 -20.79929 -19.89302 -18.26629 -17.75059 -17.30303 -17.07739 -16.63065 -16.57996 -16.25812 -15.79714 -15.75439 -15.43890 -15.23568 -15.00311 -14.55560 -14.50892 -14.35952 -14.27056 -13.79914 -13.65480 -13.56848 -13.44386 -13.30185 -12.98321 -12.67051 -12.52669 -12.21224 -12.16412 -11.97341 -11.90158 -11.71601 -11.39424 -11.32308 -10.93174 -10.55416 -10.48488 -10.18776 -10.08661 -9.88271 -8.67585 -8.57054 -7.86917 -5.57554 -0.22388 0.48432 0.70629 1.38797 1.44286 1.52816 1.79793 1.88647 2.07459 2.30428 2.45697 2.97477 3.11491 3.37668 3.51520 3.58475 3.81549 3.92430 4.06169 4.23992 4.27695 4.28271 4.31259 4.33383 4.41600 4.49941 4.55719 4.58095 4.60417 4.74261 4.86327 4.93703 5.01361 5.03730 5.12278 5.13020 5.15045 5.24903 5.37346 5.41632 5.52429 5.54331 5.59940 5.61164 5.68861 5.76876 5.82688 6.04026 6.28015 6.40843 6.49696 7.05443 7.10656 7.75070 8.27375 9.03673 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012388 B = 0.002352 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.719060 B =11903.756953 C =12364.264625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.027 4.027 3 Si 0.947 3.053 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.263 4.263 8 H 0.056 0.944 9 N -0.564 5.564 10 C 0.150 3.850 11 C 0.120 3.880 12 N -0.711 5.711 13 C 0.581 3.419 14 O -0.576 6.576 15 C -0.063 4.063 16 C -0.113 4.113 17 C -0.189 4.189 18 C 0.091 3.909 19 C -0.042 4.042 20 C -0.133 4.133 21 C -0.123 4.123 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.103 4.103 25 N -0.523 5.523 26 H 0.424 0.576 27 C 0.098 3.902 28 C -0.184 4.184 29 C -0.211 4.211 30 H 0.253 0.747 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.037 0.963 35 H 0.405 0.595 36 H 0.150 0.850 37 H 0.174 0.826 38 H 0.122 0.878 39 H 0.140 0.860 40 H 0.146 0.854 41 H 0.152 0.848 42 H 0.145 0.855 43 H 0.111 0.889 44 H 0.074 0.926 45 H 0.110 0.890 46 H 0.103 0.897 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.561 -6.550 18.324 23.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.225 4.225 3 Si 0.776 3.224 4 H -0.197 1.197 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.393 4.393 8 H 0.074 0.926 9 N -0.282 5.282 10 C 0.023 3.977 11 C -0.006 4.006 12 N -0.362 5.362 13 C 0.370 3.630 14 O -0.456 6.456 15 C -0.176 4.176 16 C -0.140 4.140 17 C -0.213 4.213 18 C -0.026 4.026 19 C -0.043 4.043 20 C -0.151 4.151 21 C -0.141 4.141 22 C -0.139 4.139 23 C -0.136 4.136 24 C -0.122 4.122 25 N -0.120 5.120 26 H 0.264 0.736 27 C -0.010 4.010 28 C -0.222 4.222 29 C -0.252 4.252 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.240 0.760 36 H 0.168 0.832 37 H 0.191 0.809 38 H 0.140 0.860 39 H 0.158 0.842 40 H 0.164 0.836 41 H 0.169 0.831 42 H 0.163 0.837 43 H 0.129 0.871 44 H 0.093 0.907 45 H 0.128 0.872 46 H 0.121 0.879 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.849 -6.525 18.142 23.169 hybrid contribution 0.021 1.331 -1.024 1.679 sum -12.828 -5.194 17.118 22.012 Atomic orbital electron populations 1.70144 1.06311 1.26440 1.52060 1.25787 0.95735 1.01118 0.99847 0.85538 0.79071 0.80883 0.76946 1.19656 1.21593 1.21489 1.19176 0.93239 0.86139 1.40776 0.92618 1.43355 1.51187 1.03840 1.29800 1.20858 0.91078 1.02000 0.83761 1.21912 0.92884 0.99983 0.85799 1.45801 1.12530 1.71718 1.06155 1.17415 0.86991 0.76376 0.82206 1.90803 1.17504 1.51947 1.85379 1.20224 0.83268 1.18616 0.95521 1.21411 1.00127 1.02164 0.90294 1.21367 0.90128 1.09438 1.00324 1.19482 0.93447 1.06089 0.83610 1.18198 0.88446 1.02663 0.94993 1.21359 0.93937 1.00828 0.99001 1.21343 0.95604 0.99554 0.97601 1.21639 1.01029 0.98485 0.92730 1.21451 0.92367 0.98737 1.01032 1.21403 0.97430 0.98957 0.94427 1.42002 1.06634 1.54281 1.09087 0.73615 1.21553 1.02276 0.89980 0.87168 1.23038 0.92163 1.02328 1.04644 1.23239 0.97140 1.01143 1.03628 0.93806 0.90760 0.93454 0.92933 0.94468 0.76010 0.83246 0.80902 0.85958 0.84177 0.83603 0.83063 0.83715 0.87120 0.90720 0.87205 0.87918 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.00 11.50 21.65 0.25 -49.76 16 2 C -0.03 -1.42 4.98 84.86 0.42 -1.00 16 3 Si 0.95 44.07 29.60 68.60 2.03 46.10 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 7 C -0.26 -13.95 8.47 84.03 0.71 -13.24 16 8 H 0.06 3.02 6.74 -2.91 -0.02 3.00 16 9 N -0.56 -26.92 2.75 -678.04 -1.86 -28.78 16 10 C 0.15 6.48 5.45 86.38 0.47 6.95 16 11 C 0.12 4.83 6.00 86.38 0.52 5.35 16 12 N -0.71 -23.68 5.55 -467.14 -2.59 -26.27 16 13 C 0.58 20.51 7.78 86.42 0.67 21.18 16 14 O -0.58 -24.87 16.87 -4.39 -0.07 -24.94 16 15 C -0.06 -1.78 7.04 40.36 0.28 -1.50 16 16 C -0.11 -2.95 10.60 22.49 0.24 -2.71 16 17 C -0.19 -3.88 10.22 22.44 0.23 -3.65 16 18 C 0.09 1.89 6.93 40.87 0.28 2.17 16 19 C -0.04 -0.74 5.87 -20.09 -0.12 -0.86 16 20 C -0.13 -2.16 9.70 22.53 0.22 -1.94 16 21 C -0.12 -1.65 10.03 22.23 0.22 -1.43 16 22 C -0.12 -1.35 10.04 22.33 0.22 -1.13 16 23 C -0.12 -1.30 10.03 22.23 0.22 -1.07 16 24 C -0.10 -1.43 9.56 22.53 0.22 -1.21 16 25 N -0.52 -11.61 5.90 -172.29 -1.02 -12.63 16 26 H 0.42 7.58 7.24 -92.71 -0.67 6.91 16 27 C 0.10 4.00 6.56 44.99 0.30 4.30 16 28 C -0.18 -6.95 9.80 30.59 0.30 -6.65 16 29 C -0.21 -8.20 10.36 30.59 0.32 -7.88 16 30 H 0.25 13.46 8.32 -92.70 -0.77 12.69 16 31 H 0.07 3.63 5.59 -2.39 -0.01 3.61 16 32 H 0.05 1.87 8.07 -2.39 -0.02 1.85 16 33 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.40 10.99 7.58 -92.70 -0.70 10.29 16 36 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 37 H 0.17 2.43 7.26 -2.91 -0.02 2.41 16 38 H 0.12 1.75 7.14 -2.91 -0.02 1.73 16 39 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 40 H 0.15 0.91 8.06 -2.91 -0.02 0.89 16 41 H 0.15 0.85 8.06 -2.91 -0.02 0.83 16 42 H 0.15 1.45 6.98 -2.91 -0.02 1.43 16 43 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 44 H 0.07 3.19 6.46 -2.39 -0.02 3.17 16 45 H 0.11 3.38 8.14 -2.38 -0.02 3.36 16 46 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 47 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -68.82 395.39 2.10 -66.72 By element: Atomic # 1 Polarization: 34.23 SS G_CDS: -0.36 Total: 33.86 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 5.73 Total: -4.31 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -5.22 Total: -117.44 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.07 Total: -24.94 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -68.82 2.10 -66.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691239408.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.663 kcal (2) G-P(sol) polarization free energy of solvation -68.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds