Wall clock time and date at job start Tue Mar 31 2020 22:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99847 * 2 1 4 4 H 1.48495 * 109.47125 * 270.00497 * 3 2 1 5 5 H 1.48502 * 109.46762 * 30.00315 * 3 2 1 6 6 H 1.48500 * 109.47109 * 150.00042 * 3 2 1 7 7 C 1.38814 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99896 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99738 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00091 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47361 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47452 * 64.99959 * 11 10 9 13 13 N 1.46500 * 109.47327 * 304.99897 * 11 10 9 14 14 C 1.34773 * 120.00431 * 155.00306 * 13 11 10 15 15 O 1.21583 * 119.99900 * 359.97438 * 14 13 11 16 16 C 1.47637 * 120.00162 * 179.72279 * 14 13 11 17 17 C 1.39721 * 120.07712 * 0.02562 * 16 14 13 18 18 C 1.37716 * 119.92107 * 179.80926 * 17 16 14 19 19 C 1.39066 * 120.07843 * 0.44183 * 18 17 16 20 20 N 1.39795 * 119.92211 * 179.76417 * 19 18 17 21 21 C 1.36638 * 125.67581 * 179.71083 * 20 19 18 22 22 C 1.34814 * 108.19216 * 179.83067 * 21 20 19 23 23 C 1.40977 * 107.48522 * 0.43148 * 22 21 20 24 24 C 1.34818 * 107.48411 * 359.73204 * 23 22 21 25 25 C 1.39067 * 120.15273 * 359.78493 * 19 18 17 26 26 C 1.37702 * 120.08099 * 0.02562 * 25 19 18 27 27 C 1.53008 * 109.47295 * 185.00014 * 11 10 9 28 28 C 1.52999 * 117.49583 * 248.74725 * 27 11 10 29 29 C 1.52992 * 117.50026 * 180.08936 * 27 11 10 30 30 H 0.97003 * 120.00495 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00610 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47274 * 59.99816 * 10 9 7 33 33 H 1.09007 * 109.46750 * 299.99825 * 10 9 7 34 34 H 0.97000 * 119.99456 * 334.99869 * 13 11 10 35 35 H 1.07997 * 120.04321 * 359.97438 * 17 16 14 36 36 H 1.07998 * 119.96362 * 180.20419 * 18 17 16 37 37 H 1.08004 * 125.90480 * 359.97438 * 21 20 19 38 38 H 1.08009 * 126.25882 * 180.18380 * 22 21 20 39 39 H 1.07997 * 126.26240 * 179.75834 * 23 22 21 40 40 H 1.07995 * 125.91031 * 180.02562 * 24 23 22 41 41 H 1.07998 * 119.95396 * 179.97438 * 25 19 18 42 42 H 1.08005 * 120.03694 * 179.97438 * 26 25 19 43 43 H 1.08997 * 115.54678 * 34.40721 * 27 11 10 44 44 H 1.08998 * 117.50367 * 359.97438 * 28 27 11 45 45 H 1.09000 * 117.49955 * 145.01750 * 28 27 11 46 46 H 1.09008 * 117.49544 * 214.98033 * 29 27 11 47 47 H 1.09002 * 117.50408 * 359.96815 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4707 -0.0011 11 6 5.6163 -2.1911 -0.0011 12 1 5.8942 -1.6977 0.9303 13 7 5.9517 -1.3230 -1.1325 14 6 7.0496 -0.5430 -1.0813 15 8 7.7615 -0.5594 -0.0958 16 6 7.3909 0.3273 -2.2240 17 6 6.5765 0.3440 -3.3592 18 6 6.8957 1.1599 -4.4217 19 6 8.0321 1.9598 -4.3694 20 7 8.3557 2.7831 -5.4518 21 6 9.4357 3.6170 -5.5238 22 6 9.4087 4.2385 -6.7198 23 6 8.2670 3.7813 -7.4090 24 6 7.6413 2.8925 -6.6114 25 6 8.8475 1.9422 -3.2430 26 6 8.5323 1.1317 -2.1754 27 6 6.3805 -3.5107 -0.1268 28 6 7.1795 -3.9829 1.0895 29 6 7.9088 -3.4433 -0.1433 30 1 -0.4851 0.8400 0.0004 31 1 3.8646 -0.3620 -0.0014 32 1 3.8485 -3.0425 -0.8908 33 1 3.8492 -3.0421 0.8892 34 1 5.3835 -1.3096 -1.9186 35 1 5.6962 -0.2803 -3.4023 36 1 6.2649 1.1758 -5.2981 37 1 10.1833 3.7528 -4.7563 38 1 10.1278 4.9584 -7.0820 39 1 7.9516 4.0867 -8.3957 40 1 6.7327 2.3589 -6.8482 41 1 9.7295 2.5644 -3.2060 42 1 9.1663 1.1182 -1.3011 43 1 5.9036 -4.2732 -0.7426 44 1 7.1613 -3.3534 1.9791 45 1 7.2287 -5.0561 1.2736 46 1 8.4375 -4.1617 -0.7699 47 1 8.3701 -2.4588 -0.0651 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699579355.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:59 Heat of formation + Delta-G solvation = 92.214432 kcal Electronic energy + Delta-G solvation = -28531.845926 eV Core-core repulsion = 24682.076872 eV Total energy + Delta-G solvation = -3849.769054 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.94638 -40.34642 -38.73239 -37.16040 -35.25344 -33.84095 -33.31183 -31.73300 -31.30026 -29.61070 -29.14583 -28.19904 -24.47401 -23.80585 -23.25225 -22.23195 -21.45923 -21.28956 -20.42393 -20.18708 -20.01612 -18.97580 -18.09005 -17.32685 -16.47343 -15.59073 -15.37451 -15.27502 -15.19236 -14.92910 -14.70605 -14.44745 -14.17859 -13.88804 -13.79996 -13.61603 -13.32531 -12.84801 -12.79850 -12.67824 -12.62215 -12.35189 -12.28307 -11.97342 -11.46145 -11.34453 -11.28996 -11.09400 -10.93198 -10.28923 -10.22526 -10.12704 -10.05020 -9.79515 -9.66297 -9.45964 -9.00347 -8.87323 -8.58169 -8.31025 -7.33562 -5.84224 -3.20872 0.28440 0.95997 1.95590 2.48764 2.68810 2.85338 3.13503 3.30992 3.36808 3.40777 3.63268 4.01461 4.25490 4.37081 4.52245 4.61653 4.67180 4.70106 4.79208 4.88030 4.92103 5.05769 5.12243 5.16855 5.25307 5.28000 5.37720 5.43820 5.53724 5.57669 5.67487 5.70313 5.77264 5.82136 5.84741 5.91946 5.97616 6.01207 6.05142 6.23327 6.30249 6.34034 6.40520 6.51077 6.57981 6.73733 6.85451 7.08783 7.60466 7.90688 8.26225 8.34374 9.12565 9.84773 10.03788 11.33832 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009077 B = 0.003402 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.024710 B = 8229.474225 C =10552.154097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.009 3.991 3 Si 0.879 3.121 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.092 0.908 9 N -0.755 5.755 10 C 0.152 3.848 11 C 0.165 3.835 12 H 0.090 0.910 13 N -0.706 5.706 14 C 0.560 3.440 15 O -0.539 6.539 16 C -0.144 4.144 17 C -0.053 4.053 18 C -0.147 4.147 19 C 0.162 3.838 20 N -0.399 5.399 21 C -0.015 4.015 22 C -0.190 4.190 23 C -0.190 4.190 24 C -0.013 4.013 25 C -0.151 4.151 26 C -0.030 4.030 27 C -0.163 4.163 28 C -0.169 4.169 29 C -0.185 4.185 30 H 0.260 0.740 31 H 0.362 0.638 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.403 0.597 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.166 0.834 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.167 0.833 41 H 0.136 0.864 42 H 0.146 0.854 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.742 1.302 -11.419 23.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.188 4.188 3 Si 0.709 3.291 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.110 0.890 9 N -0.402 5.402 10 C 0.025 3.975 11 C 0.060 3.940 12 H 0.108 0.892 13 N -0.356 5.356 14 C 0.348 3.652 15 O -0.419 6.419 16 C -0.148 4.148 17 C -0.072 4.072 18 C -0.167 4.167 19 C 0.069 3.931 20 N -0.070 5.070 21 C -0.141 4.141 22 C -0.214 4.214 23 C -0.214 4.214 24 C -0.139 4.139 25 C -0.171 4.171 26 C -0.050 4.050 27 C -0.183 4.183 28 C -0.207 4.207 29 C -0.222 4.222 30 H 0.070 0.930 31 H 0.195 0.805 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.239 0.761 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.183 0.817 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.184 0.816 41 H 0.154 0.846 42 H 0.163 0.837 43 H 0.124 0.876 44 H 0.113 0.887 45 H 0.109 0.891 46 H 0.102 0.898 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 20.900 1.031 -10.494 23.409 hybrid contribution 0.111 1.261 -0.463 1.348 sum 21.010 2.292 -10.957 23.806 Atomic orbital electron populations 1.69689 1.05060 1.25904 1.57210 1.24649 0.95179 0.97083 1.01851 0.86634 0.79390 0.85204 0.77860 1.21014 1.21563 1.20343 1.19031 0.80424 0.94771 1.43436 0.89046 1.42708 1.04124 1.02053 1.91283 1.20910 0.86803 0.89870 0.99951 1.20916 0.95317 0.88093 0.89655 0.89187 1.45966 1.26300 1.42345 1.20984 1.18070 0.81033 0.79565 0.86555 1.90695 1.50676 1.67317 1.33204 1.20069 0.97993 1.01277 0.95440 1.21272 0.98086 0.96364 0.91469 1.20756 0.96824 0.98358 1.00740 1.18082 0.95494 0.92261 0.87281 1.41660 1.21045 1.31833 1.12498 1.21950 0.93578 0.97723 1.00870 1.21029 1.00815 1.04571 0.94959 1.21035 0.97876 1.01635 1.00852 1.21996 1.00398 1.04889 0.86627 1.20761 1.01005 1.02663 0.92672 1.21107 0.94698 0.91589 0.97582 1.22616 0.93730 0.98986 1.02967 1.22903 1.04286 1.00806 0.92704 1.23262 0.93950 1.04064 1.00906 0.92960 0.80461 0.94773 0.93672 0.76076 0.84261 0.84497 0.81692 0.84099 0.84057 0.81574 0.84641 0.83662 0.87631 0.88717 0.89061 0.89804 0.86580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.75 13.97 55.49 0.78 -27.97 16 2 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 3 Si 0.88 21.98 27.73 -169.99 -4.71 17.26 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.74 6.52 56.52 0.37 -6.37 16 7 C -0.25 -6.75 10.47 -15.06 -0.16 -6.91 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 9 N -0.76 -17.11 5.24 -59.91 -0.31 -17.43 16 10 C 0.15 2.74 5.80 -4.04 -0.02 2.71 16 11 C 0.16 2.53 2.43 -67.93 -0.17 2.36 16 12 H 0.09 1.57 7.33 -51.93 -0.38 1.19 16 13 N -0.71 -10.19 4.45 -54.81 -0.24 -10.43 16 14 C 0.56 8.32 7.10 -12.43 -0.09 8.23 16 15 O -0.54 -9.19 13.36 5.29 0.07 -9.12 16 16 C -0.14 -1.83 5.88 -104.95 -0.62 -2.44 16 17 C -0.05 -0.59 9.53 -39.22 -0.37 -0.96 16 18 C -0.15 -1.53 9.43 -39.46 -0.37 -1.90 16 19 C 0.16 1.73 6.62 -83.61 -0.55 1.18 16 20 N -0.40 -4.14 2.97 -60.89 -0.18 -4.32 16 21 C -0.02 -0.14 10.73 -16.62 -0.18 -0.32 16 22 C -0.19 -1.72 10.86 -39.76 -0.43 -2.15 16 23 C -0.19 -1.75 10.86 -39.76 -0.43 -2.19 16 24 C -0.01 -0.13 10.73 -16.62 -0.18 -0.30 16 25 C -0.15 -1.51 9.43 -39.47 -0.37 -1.89 16 26 C -0.03 -0.34 9.58 -39.22 -0.38 -0.72 16 27 C -0.16 -2.13 5.36 -90.62 -0.49 -2.61 16 28 C -0.17 -2.07 10.18 -26.70 -0.27 -2.34 16 29 C -0.18 -2.36 9.73 -26.70 -0.26 -2.62 16 30 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 31 H 0.36 8.25 5.20 -40.82 -0.21 8.04 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 34 H 0.40 5.34 6.62 -40.82 -0.27 5.07 16 35 H 0.14 1.37 6.39 -52.49 -0.34 1.04 16 36 H 0.14 1.15 6.68 -52.49 -0.35 0.80 16 37 H 0.17 1.12 6.99 -52.48 -0.37 0.75 16 38 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 39 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 40 H 0.17 1.24 6.99 -52.49 -0.37 0.87 16 41 H 0.14 1.03 6.68 -52.49 -0.35 0.68 16 42 H 0.15 1.57 7.64 -52.48 -0.40 1.16 16 43 H 0.11 1.27 8.11 -51.93 -0.42 0.85 16 44 H 0.09 1.21 8.05 -51.93 -0.42 0.79 16 45 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 47 H 0.12 1.71 5.02 -51.93 -0.26 1.45 16 LS Contribution 385.43 15.07 5.81 5.81 Total: -1.00 -33.21 385.43 -10.49 -43.70 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -6.26 Total: 15.21 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -5.43 Total: -12.71 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: 0.04 Total: -60.15 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.07 Total: -9.12 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.71 Total: 17.26 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.21 -10.49 -43.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699579355.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.915 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds