Wall clock time and date at job start Tue Mar 31 2020 22:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99847 * 2 1 4 4 H 1.48495 * 109.47125 * 270.00497 * 3 2 1 5 5 H 1.48502 * 109.46762 * 30.00315 * 3 2 1 6 6 H 1.48500 * 109.47109 * 150.00042 * 3 2 1 7 7 C 1.38814 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99896 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99738 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00091 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47361 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47452 * 64.99959 * 11 10 9 13 13 N 1.46500 * 109.47327 * 304.99897 * 11 10 9 14 14 C 1.34773 * 120.00431 * 155.00306 * 13 11 10 15 15 O 1.21583 * 119.99900 * 359.97438 * 14 13 11 16 16 C 1.47637 * 120.00162 * 179.72279 * 14 13 11 17 17 C 1.39721 * 120.07712 * 0.02562 * 16 14 13 18 18 C 1.37716 * 119.92107 * 179.80926 * 17 16 14 19 19 C 1.39066 * 120.07843 * 0.44183 * 18 17 16 20 20 N 1.39795 * 119.92211 * 179.76417 * 19 18 17 21 21 C 1.36638 * 125.67581 * 179.71083 * 20 19 18 22 22 C 1.34814 * 108.19216 * 179.83067 * 21 20 19 23 23 C 1.40977 * 107.48522 * 0.43148 * 22 21 20 24 24 C 1.34818 * 107.48411 * 359.73204 * 23 22 21 25 25 C 1.39067 * 120.15273 * 359.78493 * 19 18 17 26 26 C 1.37702 * 120.08099 * 0.02562 * 25 19 18 27 27 C 1.53008 * 109.47295 * 185.00014 * 11 10 9 28 28 C 1.52999 * 117.49583 * 248.74725 * 27 11 10 29 29 C 1.52992 * 117.50026 * 180.08936 * 27 11 10 30 30 H 0.97003 * 120.00495 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00610 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47274 * 59.99816 * 10 9 7 33 33 H 1.09007 * 109.46750 * 299.99825 * 10 9 7 34 34 H 0.97000 * 119.99456 * 334.99869 * 13 11 10 35 35 H 1.07997 * 120.04321 * 359.97438 * 17 16 14 36 36 H 1.07998 * 119.96362 * 180.20419 * 18 17 16 37 37 H 1.08004 * 125.90480 * 359.97438 * 21 20 19 38 38 H 1.08009 * 126.25882 * 180.18380 * 22 21 20 39 39 H 1.07997 * 126.26240 * 179.75834 * 23 22 21 40 40 H 1.07995 * 125.91031 * 180.02562 * 24 23 22 41 41 H 1.07998 * 119.95396 * 179.97438 * 25 19 18 42 42 H 1.08005 * 120.03694 * 179.97438 * 26 25 19 43 43 H 1.08997 * 115.54678 * 34.40721 * 27 11 10 44 44 H 1.08998 * 117.50367 * 359.97438 * 28 27 11 45 45 H 1.09000 * 117.49955 * 145.01750 * 28 27 11 46 46 H 1.09008 * 117.49544 * 214.98033 * 29 27 11 47 47 H 1.09002 * 117.50408 * 359.96815 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4707 -0.0011 11 6 5.6163 -2.1911 -0.0011 12 1 5.8942 -1.6977 0.9303 13 7 5.9517 -1.3230 -1.1325 14 6 7.0496 -0.5430 -1.0813 15 8 7.7615 -0.5594 -0.0958 16 6 7.3909 0.3273 -2.2240 17 6 6.5765 0.3440 -3.3592 18 6 6.8957 1.1599 -4.4217 19 6 8.0321 1.9598 -4.3694 20 7 8.3557 2.7831 -5.4518 21 6 9.4357 3.6170 -5.5238 22 6 9.4087 4.2385 -6.7198 23 6 8.2670 3.7813 -7.4090 24 6 7.6413 2.8925 -6.6114 25 6 8.8475 1.9422 -3.2430 26 6 8.5323 1.1317 -2.1754 27 6 6.3805 -3.5107 -0.1268 28 6 7.1795 -3.9829 1.0895 29 6 7.9088 -3.4433 -0.1433 30 1 -0.4851 0.8400 0.0004 31 1 3.8646 -0.3620 -0.0014 32 1 3.8485 -3.0425 -0.8908 33 1 3.8492 -3.0421 0.8892 34 1 5.3835 -1.3096 -1.9186 35 1 5.6962 -0.2803 -3.4023 36 1 6.2649 1.1758 -5.2981 37 1 10.1833 3.7528 -4.7563 38 1 10.1278 4.9584 -7.0820 39 1 7.9516 4.0867 -8.3957 40 1 6.7327 2.3589 -6.8482 41 1 9.7295 2.5644 -3.2060 42 1 9.1663 1.1182 -1.3011 43 1 5.9036 -4.2732 -0.7426 44 1 7.1613 -3.3534 1.9791 45 1 7.2287 -5.0561 1.2736 46 1 8.4375 -4.1617 -0.7699 47 1 8.3701 -2.4588 -0.0651 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699579355.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:58 Heat of formation + Delta-G solvation = 74.100191 kcal Electronic energy + Delta-G solvation = -28532.631418 eV Core-core repulsion = 24682.076872 eV Total energy + Delta-G solvation = -3850.554546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.65093 -41.41576 -39.64773 -38.29270 -36.77521 -35.18897 -34.26682 -33.34899 -32.39694 -30.71757 -29.82401 -29.45827 -25.92638 -24.97416 -24.08273 -23.25607 -23.00763 -22.28671 -21.45774 -20.93121 -20.90355 -19.98879 -19.59675 -18.58153 -17.59023 -16.83293 -16.54003 -16.23580 -16.16397 -16.01217 -15.92770 -15.64168 -15.18862 -14.94346 -14.82706 -14.76525 -14.60818 -14.35714 -13.92268 -13.63675 -13.59571 -13.46158 -13.24507 -12.99057 -12.92845 -12.73498 -12.58637 -12.29947 -12.21562 -12.13555 -11.86321 -11.32915 -11.15217 -11.04850 -10.92750 -10.88612 -10.25965 -10.05906 -9.34555 -9.25607 -9.08724 -8.05441 -5.38647 -0.56704 0.16083 1.16676 1.32407 1.35490 1.41457 1.77604 1.90494 2.02394 2.03494 2.43069 2.73215 2.99191 3.26469 3.40587 3.49346 3.62029 3.67489 3.84004 3.97060 4.01534 4.06053 4.13024 4.14532 4.23194 4.26699 4.40131 4.41957 4.55551 4.59136 4.68848 4.80461 4.82830 4.87319 4.94278 4.99435 5.04169 5.06219 5.17354 5.28256 5.29207 5.31884 5.34755 5.47328 5.54209 5.74416 5.92303 6.17364 6.18119 6.38692 6.48667 7.04004 7.14336 7.79170 7.97337 9.15871 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009077 B = 0.003402 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.024710 B = 8229.474225 C =10552.154097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.055 4.055 3 Si 0.943 3.057 4 H -0.271 1.271 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.229 4.229 8 H 0.065 0.935 9 N -0.757 5.757 10 C 0.152 3.848 11 C 0.176 3.824 12 H 0.068 0.932 13 N -0.705 5.705 14 C 0.559 3.441 15 O -0.567 6.567 16 C -0.164 4.164 17 C -0.054 4.054 18 C -0.151 4.151 19 C 0.160 3.840 20 N -0.408 5.408 21 C -0.028 4.028 22 C -0.200 4.200 23 C -0.200 4.200 24 C -0.030 4.030 25 C -0.148 4.148 26 C -0.034 4.034 27 C -0.165 4.165 28 C -0.164 4.164 29 C -0.181 4.181 30 H 0.258 0.742 31 H 0.363 0.637 32 H 0.049 0.951 33 H 0.044 0.956 34 H 0.409 0.591 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.187 0.813 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.183 0.817 41 H 0.159 0.841 42 H 0.146 0.854 43 H 0.122 0.878 44 H 0.084 0.916 45 H 0.114 0.886 46 H 0.101 0.899 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.727 1.614 -12.762 26.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.247 4.247 3 Si 0.772 3.228 4 H -0.197 1.197 5 H -0.224 1.224 6 H -0.193 1.193 7 C -0.359 4.359 8 H 0.083 0.917 9 N -0.403 5.403 10 C 0.026 3.974 11 C 0.071 3.929 12 H 0.086 0.914 13 N -0.355 5.355 14 C 0.348 3.652 15 O -0.448 6.448 16 C -0.167 4.167 17 C -0.073 4.073 18 C -0.170 4.170 19 C 0.066 3.934 20 N -0.080 5.080 21 C -0.153 4.153 22 C -0.223 4.223 23 C -0.224 4.224 24 C -0.156 4.156 25 C -0.168 4.168 26 C -0.054 4.054 27 C -0.185 4.185 28 C -0.202 4.202 29 C -0.218 4.218 30 H 0.067 0.933 31 H 0.197 0.803 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.246 0.754 35 H 0.167 0.833 36 H 0.173 0.827 37 H 0.204 0.796 38 H 0.176 0.824 39 H 0.174 0.826 40 H 0.200 0.800 41 H 0.176 0.824 42 H 0.163 0.837 43 H 0.139 0.861 44 H 0.102 0.898 45 H 0.132 0.868 46 H 0.120 0.880 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 22.930 1.322 -11.864 25.851 hybrid contribution -0.460 1.117 -0.097 1.212 sum 22.469 2.439 -11.961 25.571 Atomic orbital electron populations 1.69848 1.06853 1.26555 1.59711 1.25344 0.95896 1.00565 1.02886 0.85593 0.78138 0.80750 0.78364 1.19650 1.22437 1.19347 1.19028 0.82365 0.93606 1.40949 0.91670 1.42700 1.02614 1.03892 1.91056 1.21049 0.88117 0.87932 1.00317 1.20651 0.93607 0.89399 0.89255 0.91398 1.45926 1.26480 1.42301 1.20818 1.18400 0.80560 0.79418 0.86823 1.90679 1.51514 1.68208 1.34444 1.19990 0.99308 1.02110 0.95340 1.21379 0.98162 0.96609 0.91176 1.20975 0.97064 0.97921 1.01078 1.18269 0.95515 0.92071 0.87547 1.41797 1.21559 1.32102 1.12561 1.22431 0.93770 0.97458 1.01671 1.21384 1.01140 1.04815 0.94990 1.21383 0.97949 1.01444 1.01577 1.22409 1.01157 1.05394 0.86610 1.20961 1.01578 1.02333 0.91917 1.21179 0.94407 0.91692 0.98101 1.22547 0.93820 0.98002 1.04112 1.22988 1.03271 1.01930 0.91996 1.23199 0.93503 1.03554 1.01579 0.93302 0.80347 0.93340 0.93804 0.75368 0.83338 0.82709 0.79644 0.82383 0.82551 0.80031 0.82368 0.83653 0.86050 0.89758 0.86817 0.88016 0.88623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.53 13.97 21.65 0.30 -61.23 16 2 C -0.05 -3.17 5.50 84.86 0.47 -2.70 16 3 Si 0.94 45.46 27.73 68.60 1.90 47.36 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 6 H -0.27 -12.33 6.52 99.48 0.65 -11.68 16 7 C -0.23 -12.54 10.47 84.03 0.88 -11.66 16 8 H 0.07 3.88 8.06 -2.91 -0.02 3.85 16 9 N -0.76 -33.71 5.24 -343.46 -1.80 -35.51 16 10 C 0.15 5.32 5.80 86.38 0.50 5.82 16 11 C 0.18 5.25 2.43 44.99 0.11 5.36 16 12 H 0.07 2.36 7.33 -2.39 -0.02 2.34 16 13 N -0.70 -19.67 4.45 -445.60 -1.98 -21.65 16 14 C 0.56 16.29 7.10 86.73 0.62 16.91 16 15 O -0.57 -19.35 13.36 -3.98 -0.05 -19.40 16 16 C -0.16 -3.99 5.88 -20.08 -0.12 -4.11 16 17 C -0.05 -1.13 9.53 22.50 0.21 -0.91 16 18 C -0.15 -2.84 9.43 22.35 0.21 -2.63 16 19 C 0.16 3.10 6.62 38.27 0.25 3.35 16 20 N -0.41 -7.62 2.97 -346.56 -1.03 -8.65 16 21 C -0.03 -0.46 10.73 83.16 0.89 0.43 16 22 C -0.20 -3.19 10.86 22.15 0.24 -2.95 16 23 C -0.20 -3.30 10.86 22.16 0.24 -3.06 16 24 C -0.03 -0.53 10.73 83.16 0.89 0.36 16 25 C -0.15 -2.69 9.43 22.34 0.21 -2.48 16 26 C -0.03 -0.74 9.58 22.50 0.22 -0.53 16 27 C -0.17 -4.03 5.36 -10.79 -0.06 -4.08 16 28 C -0.16 -3.73 10.18 30.62 0.31 -3.42 16 29 C -0.18 -4.34 9.73 30.61 0.30 -4.04 16 30 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 31 H 0.36 16.11 5.20 -92.71 -0.48 15.63 16 32 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.41 10.30 6.62 -92.71 -0.61 9.68 16 35 H 0.15 2.69 6.39 -2.91 -0.02 2.68 16 36 H 0.16 2.25 6.68 -2.91 -0.02 2.23 16 37 H 0.19 2.02 6.99 -2.91 -0.02 2.00 16 38 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 39 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 40 H 0.18 2.33 6.99 -2.91 -0.02 2.31 16 41 H 0.16 2.03 6.68 -2.91 -0.02 2.01 16 42 H 0.15 3.06 7.64 -2.91 -0.02 3.04 16 43 H 0.12 2.61 8.11 -2.39 -0.02 2.59 16 44 H 0.08 2.10 8.05 -2.39 -0.02 2.08 16 45 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 47 H 0.10 2.78 5.02 -2.39 -0.01 2.76 16 Total: -1.00 -71.44 385.43 3.58 -67.86 By element: Atomic # 1 Polarization: 41.72 SS G_CDS: -0.14 Total: 41.58 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: 6.38 Total: -10.35 kcal Atomic # 7 Polarization: -122.54 SS G_CDS: -4.51 Total: -127.04 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.05 Total: -19.40 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.90 Total: 47.36 kcal Total: -71.44 3.58 -67.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699579355.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.958 kcal (2) G-P(sol) polarization free energy of solvation -71.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds