Wall clock time and date at job start Tue Mar 31 2020 22:55:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86797 * 120.00365 * 2 1
4 4 H 1.48507 * 109.47200 * 240.00624 * 3 2 1
5 5 H 1.48501 * 109.46986 * 0.02562 * 3 2 1
6 6 H 1.48499 * 109.47367 * 120.00343 * 3 2 1
7 7 C 1.38813 * 119.99756 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00026 * 179.97438 * 7 2 1
9 9 N 1.36940 * 119.99883 * 359.97438 * 7 2 1
10 10 C 1.46507 * 119.99713 * 180.02562 * 9 7 2
11 11 C 1.53000 * 109.46629 * 179.97438 * 10 9 7
12 12 H 1.08992 * 109.47416 * 294.99883 * 11 10 9
13 13 N 1.46499 * 109.47506 * 55.00205 * 11 10 9
14 14 C 1.34775 * 120.00059 * 205.00009 * 13 11 10
15 15 O 1.21572 * 120.00082 * 359.97438 * 14 13 11
16 16 C 1.47649 * 119.99889 * 180.02562 * 14 13 11
17 17 C 1.39717 * 120.07586 * 179.97438 * 16 14 13
18 18 C 1.37714 * 119.91563 * 180.02562 * 17 16 14
19 19 C 1.39054 * 120.08288 * 0.02562 * 18 17 16
20 20 N 1.39799 * 119.92537 * 179.97438 * 19 18 17
21 21 C 1.36644 * 125.67536 * 359.96599 * 20 19 18
22 22 C 1.34806 * 108.19301 * 180.02562 * 21 20 19
23 23 C 1.40985 * 107.48610 * 359.97438 * 22 21 20
24 24 C 1.34804 * 107.48059 * 0.02562 * 23 22 21
25 25 C 1.39063 * 120.15416 * 0.27216 * 19 18 17
26 26 C 1.37710 * 120.08255 * 359.44996 * 25 19 18
27 27 C 1.53002 * 109.46850 * 175.00279 * 11 10 9
28 28 C 1.53007 * 117.49555 * 248.74831 * 27 11 10
29 29 C 1.52995 * 117.49950 * 180.08940 * 27 11 10
30 30 H 0.96998 * 119.99782 * 359.97438 * 1 2 3
31 31 H 0.97001 * 120.00356 * 0.02562 * 9 7 2
32 32 H 1.08995 * 109.46723 * 60.00197 * 10 9 7
33 33 H 1.08994 * 109.46867 * 299.99574 * 10 9 7
34 34 H 0.97002 * 119.99503 * 24.99522 * 13 11 10
35 35 H 1.07996 * 120.04091 * 0.02562 * 17 16 14
36 36 H 1.07997 * 119.95699 * 179.97438 * 18 17 16
37 37 H 1.07999 * 125.90242 * 0.02934 * 21 20 19
38 38 H 1.08008 * 126.25500 * 180.26575 * 22 21 20
39 39 H 1.08000 * 126.25715 * 179.97438 * 23 22 21
40 40 H 1.07998 * 125.90104 * 179.97438 * 24 23 22
41 41 H 1.08005 * 119.95668 * 179.70124 * 25 19 18
42 42 H 1.08000 * 120.04252 * 180.27004 * 26 25 19
43 43 H 1.09001 * 115.55385 * 34.41270 * 27 11 10
44 44 H 1.08995 * 117.50040 * 359.97438 * 28 27 11
45 45 H 1.09000 * 117.49739 * 145.02193 * 28 27 11
46 46 H 1.09001 * 117.49902 * 214.97727 * 29 27 11
47 47 H 1.08998 * 117.50072 * 359.97438 * 29 27 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6176 0.0000
4 1 3.1040 1.6963 -1.2126
5 1 1.2853 2.7464 0.0006
6 1 3.1041 1.6963 1.2124
7 6 2.0102 -1.2022 -0.0005
8 1 3.0902 -1.2022 -0.0010
9 7 1.3254 -2.3881 -0.0005
10 6 2.0580 -3.6569 -0.0005
11 6 1.0636 -4.8197 0.0001
12 1 0.4978 -4.8134 0.9316
13 7 0.1437 -4.6763 -1.1310
14 6 -1.0808 -5.2371 -1.0790
15 8 -1.4217 -5.8623 -0.0937
16 6 -2.0077 -5.0930 -2.2192
17 6 -3.2772 -5.6741 -2.1673
18 6 -4.1389 -5.5381 -3.2329
19 6 -3.7467 -4.8241 -4.3598
20 7 -4.6238 -4.6885 -5.4398
21 6 -5.8858 -5.2076 -5.5115
22 6 -6.4144 -4.8659 -6.7036
23 6 -5.4468 -4.1083 -7.3945
24 6 -4.3620 -4.0152 -6.5996
25 6 -2.4815 -4.2496 -4.4174
26 6 -1.6167 -4.3766 -3.3533
27 6 1.8243 -6.1412 -0.1255
28 6 1.6658 -6.9264 -1.4292
29 6 1.0015 -7.4309 -0.1457
30 1 -0.4850 0.8401 0.0004
31 1 0.3554 -2.3881 -0.0005
32 1 2.6845 -3.7146 0.8894
33 1 2.6845 -3.7146 -0.8905
34 1 0.4159 -4.1777 -1.9173
35 1 -3.5824 -6.2292 -1.2926
36 1 -5.1202 -5.9874 -3.1936
37 1 -6.3752 -5.7908 -4.7455
38 1 -7.4008 -5.1214 -7.0618
39 1 -5.5546 -3.6814 -8.3807
40 1 -3.4445 -3.4980 -6.8383
41 1 -2.1784 -3.6998 -5.2962
42 1 -0.6359 -3.9265 -3.3970
43 1 2.7969 -6.1724 0.3656
44 1 1.0192 -6.5017 -2.1970
45 1 2.5339 -7.4745 -1.7954
46 1 1.4328 -8.3106 0.3320
47 1 -0.0818 -7.3380 -0.0690
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001699579356.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:55:01
Heat of formation + Delta-G solvation = 76.557873 kcal
Electronic energy + Delta-G solvation = -28571.217870 eV
Core-core repulsion = 24720.769897 eV
Total energy + Delta-G solvation = -3850.447973 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-42.63031 -41.49697 -39.65038 -38.19645 -36.55127 -34.99162 -34.20944 -33.07899
-32.32211 -30.52998 -29.80118 -29.31216 -26.02923 -25.02664 -24.06848 -23.46228
-22.97354 -22.33009 -21.16955 -20.89783 -20.74398 -19.73336 -19.28088 -18.54802
-17.34733 -17.24561 -16.66756 -16.15122 -16.02479 -15.93861 -15.76444 -15.34011
-15.17619 -15.07307 -14.89403 -14.63238 -14.46187 -14.33138 -13.72253 -13.60204
-13.41715 -13.22660 -13.12146 -12.97343 -12.82399 -12.69854 -12.68162 -12.30796
-12.19185 -12.12889 -11.83653 -11.31553 -11.00395 -10.93700 -10.89496 -10.78390
-10.22895 -10.00262 -9.23648 -9.06040 -9.01085 -7.93565 -5.23311 -0.53230
0.19045 1.19650 1.48716 1.51020 1.57103 1.79845 1.93264 2.04409
2.14257 2.56084 2.77042 2.95615 3.40601 3.51454 3.57658 3.66640
3.71850 3.97910 3.99775 4.08322 4.09863 4.15777 4.18906 4.26586
4.39936 4.45539 4.50234 4.57579 4.63127 4.70842 4.82502 4.83548
4.88788 4.96234 5.02524 5.05858 5.14060 5.20426 5.26910 5.30298
5.33916 5.40244 5.50032 5.52152 5.58366 5.94610 6.19800 6.26339
6.40733 6.52335 7.18582 7.34205 8.07115 8.31255 9.28882
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.008776 B = 0.003188 C = 0.002496
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3189.756595 B = 8781.361425 C =11215.030550
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.967 5.967
2 C -0.072 4.072
3 Si 0.972 3.028
4 H -0.275 1.275
5 H -0.299 1.299
6 H -0.281 1.281
7 C -0.244 4.244
8 H 0.079 0.921
9 N -0.743 5.743
10 C 0.150 3.850
11 C 0.178 3.822
12 H 0.063 0.937
13 N -0.698 5.698
14 C 0.559 3.441
15 O -0.569 6.569
16 C -0.162 4.162
17 C -0.036 4.036
18 C -0.148 4.148
19 C 0.160 3.840
20 N -0.407 5.407
21 C -0.029 4.029
22 C -0.199 4.199
23 C -0.200 4.200
24 C -0.031 4.031
25 C -0.149 4.149
26 C -0.051 4.051
27 C -0.165 4.165
28 C -0.162 4.162
29 C -0.190 4.190
30 H 0.249 0.751
31 H 0.374 0.626
32 H 0.038 0.962
33 H 0.042 0.958
34 H 0.408 0.592
35 H 0.144 0.856
36 H 0.159 0.841
37 H 0.186 0.814
38 H 0.159 0.841
39 H 0.158 0.842
40 H 0.182 0.818
41 H 0.155 0.845
42 H 0.145 0.855
43 H 0.126 0.874
44 H 0.087 0.913
45 H 0.110 0.890
46 H 0.102 0.898
47 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.593 -14.950 -13.459 21.169
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.617 5.617
2 C -0.265 4.265
3 Si 0.801 3.199
4 H -0.201 1.201
5 H -0.226 1.226
6 H -0.207 1.207
7 C -0.375 4.375
8 H 0.097 0.903
9 N -0.386 5.386
10 C 0.023 3.977
11 C 0.073 3.927
12 H 0.081 0.919
13 N -0.349 5.349
14 C 0.348 3.652
15 O -0.450 6.450
16 C -0.166 4.166
17 C -0.055 4.055
18 C -0.168 4.168
19 C 0.066 3.934
20 N -0.080 5.080
21 C -0.154 4.154
22 C -0.223 4.223
23 C -0.223 4.223
24 C -0.156 4.156
25 C -0.169 4.169
26 C -0.070 4.070
27 C -0.185 4.185
28 C -0.199 4.199
29 C -0.227 4.227
30 H 0.058 0.942
31 H 0.206 0.794
32 H 0.056 0.944
33 H 0.060 0.940
34 H 0.245 0.755
35 H 0.162 0.838
36 H 0.177 0.823
37 H 0.203 0.797
38 H 0.177 0.823
39 H 0.175 0.825
40 H 0.199 0.801
41 H 0.173 0.827
42 H 0.162 0.838
43 H 0.144 0.856
44 H 0.105 0.895
45 H 0.128 0.872
46 H 0.121 0.879
47 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -6.470 -15.296 -12.555 20.820
hybrid contribution 0.091 1.453 0.016 1.456
sum -6.380 -13.842 -12.539 19.737
Atomic orbital electron populations
1.69825 1.06595 1.25980 1.59330 1.25530 0.96273 1.00983 1.03679
0.85241 0.77147 0.79314 0.78190 1.20060 1.22584 1.20739 1.19577
0.91564 0.85050 1.41328 0.90301 1.42516 1.05628 1.00891 1.89556
1.21042 0.93339 0.83770 0.99539 1.20528 0.89575 0.93549 0.89048
0.91899 1.45836 1.14311 1.54101 1.20648 1.18405 0.81701 0.78322
0.86794 1.90671 1.76685 1.43234 1.34435 1.19990 0.96410 1.04807
0.95346 1.21169 0.91071 0.95219 0.98088 1.20946 1.01934 1.01944
0.91947 1.18232 0.90234 0.97322 0.87607 1.41790 1.12412 1.41132
1.12617 1.22436 0.85298 1.05925 1.01760 1.21380 1.01458 1.04415
0.95035 1.21377 0.94063 1.05289 1.01591 1.22407 1.02812 1.03808
0.86576 1.20944 0.92123 1.02854 1.00965 1.21316 1.00115 0.94393
0.91195 1.22617 1.01115 0.91012 1.03748 1.22960 1.03240 1.02918
0.90821 1.23283 1.00335 0.97123 1.01912 0.94193 0.79388 0.94379
0.94038 0.75526 0.83812 0.82334 0.79701 0.82317 0.82468 0.80080
0.82737 0.83756 0.85614 0.89496 0.87186 0.87946 0.88879
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -58.21 13.06 21.65 0.28 -57.93 16
2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16
3 Si 0.97 45.11 29.55 68.60 2.03 47.14 16
4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16
5 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16
6 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16
7 C -0.24 -13.04 9.99 84.03 0.84 -12.20 16
8 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16
9 N -0.74 -35.98 5.43 -343.44 -1.87 -37.85 16
10 C 0.15 5.58 5.80 86.38 0.50 6.08 16
11 C 0.18 5.87 2.59 44.99 0.12 5.99 16
12 H 0.06 2.46 7.58 -2.39 -0.02 2.44 16
13 N -0.70 -21.84 3.00 -445.61 -1.34 -23.18 16
14 C 0.56 18.27 6.60 86.73 0.57 18.84 16
15 O -0.57 -21.55 13.36 -3.94 -0.05 -21.60 16
16 C -0.16 -4.49 5.88 -20.08 -0.12 -4.61 16
17 C -0.04 -0.89 9.58 22.50 0.22 -0.67 16
18 C -0.15 -3.07 9.43 22.34 0.21 -2.86 16
19 C 0.16 3.47 6.62 38.26 0.25 3.72 16
20 N -0.41 -8.35 2.97 -346.58 -1.03 -9.38 16
21 C -0.03 -0.52 10.73 83.15 0.89 0.37 16
22 C -0.20 -3.43 10.86 22.15 0.24 -3.19 16
23 C -0.20 -3.53 10.86 22.15 0.24 -3.29 16
24 C -0.03 -0.58 10.73 83.16 0.89 0.31 16
25 C -0.15 -3.20 9.43 22.34 0.21 -2.99 16
26 C -0.05 -1.23 9.53 22.50 0.21 -1.01 16
27 C -0.17 -4.38 5.71 -10.79 -0.06 -4.44 16
28 C -0.16 -3.77 9.74 30.62 0.30 -3.47 16
29 C -0.19 -4.97 9.82 30.62 0.30 -4.67 16
30 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16
31 H 0.37 19.78 7.33 -92.71 -0.68 19.10 16
32 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16
33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16
34 H 0.41 11.96 6.62 -92.71 -0.61 11.34 16
35 H 0.14 3.49 7.64 -2.91 -0.02 3.47 16
36 H 0.16 2.39 6.68 -2.91 -0.02 2.37 16
37 H 0.19 2.32 6.99 -2.91 -0.02 2.30 16
38 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16
39 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16
40 H 0.18 2.61 6.99 -2.91 -0.02 2.59 16
41 H 0.16 2.61 6.68 -2.91 -0.02 2.59 16
42 H 0.14 3.18 6.39 -2.91 -0.02 3.17 16
43 H 0.13 2.94 8.11 -2.39 -0.02 2.92 16
44 H 0.09 2.11 6.67 -2.39 -0.02 2.09 16
45 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16
46 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16
47 H 0.09 2.96 5.01 -2.39 -0.01 2.95 16
Total: -1.00 -68.86 385.62 4.03 -64.83
By element:
Atomic # 1 Polarization: 49.91 SS G_CDS: -0.28 Total: 49.64 kcal
Atomic # 6 Polarization: -17.96 SS G_CDS: 6.29 Total: -11.67 kcal
Atomic # 7 Polarization: -124.38 SS G_CDS: -3.95 Total: -128.33 kcal
Atomic # 8 Polarization: -21.55 SS G_CDS: -0.05 Total: -21.60 kcal
Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal
Total: -68.86 4.03 -64.83 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001699579356.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 141.388 kcal
(2) G-P(sol) polarization free energy of solvation -68.863 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.524 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.830 kcal
(6) G-S(sol) free energy of system = (1) + (5) 76.558 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds