Wall clock time and date at job start Tue Mar 31 2020 23:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36543 * 120.09545 * 2 1 4 4 C 1.40708 * 118.24833 * 179.97438 * 3 2 1 5 5 C 1.40427 * 121.28937 * 179.97438 * 4 3 2 6 6 C 1.36130 * 119.65142 * 180.02562 * 5 4 3 7 7 C 1.39444 * 120.92158 * 359.97438 * 6 5 4 8 8 C 1.35990 * 121.08278 * 359.96029 * 7 6 5 9 9 C 1.40829 * 119.74145 * 0.09025 * 8 7 6 10 10 N 1.33243 * 120.98936 * 179.89038 * 9 8 7 11 11 C 1.31897 * 121.29757 * 180.02562 * 10 9 8 12 12 C 1.48275 * 119.24015 * 179.97438 * 11 10 9 13 13 O 1.21500 * 120.00010 * 256.09242 * 12 11 10 14 14 N 1.34776 * 120.00178 * 76.08788 * 12 11 10 15 15 C 1.47425 * 125.64346 * 5.15445 * 14 12 11 16 16 C 1.54910 * 104.82866 * 204.08731 * 15 14 12 17 17 C 1.55155 * 101.58517 * 322.99159 * 16 15 14 18 18 C 1.47022 * 125.64918 * 184.84057 * 14 12 11 19 19 H 1.08993 * 109.87948 * 59.56479 * 18 14 12 20 20 C 1.52996 * 109.88293 * 298.39809 * 18 14 12 21 21 N 1.46504 * 109.47101 * 176.28077 * 20 18 14 22 22 C 1.36930 * 120.00036 * 184.96786 * 21 20 18 23 23 H 1.08003 * 120.00172 * 0.02562 * 22 21 20 24 24 C 1.38818 * 120.00035 * 179.97438 * 22 21 20 25 25 N 1.31618 * 119.99585 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99973 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.46914 * 90.00451 * 26 24 22 28 28 H 1.48502 * 109.46988 * 210.00073 * 26 24 22 29 29 H 1.48501 * 109.47273 * 330.00218 * 26 24 22 30 30 H 1.08999 * 109.46606 * 85.27404 * 1 2 3 31 31 H 1.08994 * 109.46828 * 205.27255 * 1 2 3 32 32 H 1.08998 * 109.47030 * 325.27627 * 1 2 3 33 33 H 1.08004 * 120.87233 * 359.96030 * 3 2 1 34 34 H 1.08004 * 120.17377 * 0.02562 * 5 4 3 35 35 H 1.08002 * 119.54047 * 180.02562 * 6 5 4 36 36 H 1.08000 * 119.45418 * 179.97438 * 7 6 5 37 37 H 1.07999 * 120.12515 * 179.97438 * 8 7 6 38 38 H 1.08997 * 110.37156 * 322.92505 * 15 14 12 39 39 H 1.08999 * 110.36820 * 85.25563 * 15 14 12 40 40 H 1.09002 * 111.00318 * 81.06764 * 16 15 14 41 41 H 1.09003 * 111.00805 * 204.91522 * 16 15 14 42 42 H 1.08999 * 110.72204 * 153.86182 * 17 16 15 43 43 H 1.09004 * 110.72094 * 277.14172 * 17 16 15 44 44 H 1.09003 * 109.47430 * 296.27916 * 20 18 14 45 45 H 1.08999 * 109.47095 * 56.28049 * 20 18 14 46 46 H 0.96999 * 119.99894 * 4.96895 * 21 20 18 47 47 H 0.97007 * 119.99680 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1917 1.1814 0.0000 4 6 3.5980 1.1360 0.0006 5 6 4.3656 2.3119 0.0001 6 6 5.7244 2.2292 0.0001 7 6 6.3669 0.9916 0.0011 8 6 5.6568 -0.1682 0.0030 9 6 4.2491 -0.1254 0.0019 10 7 3.5287 -1.2463 0.0015 11 6 2.2102 -1.2134 0.0000 12 6 1.4538 -2.4887 -0.0010 13 8 0.9276 -2.8821 -1.0230 14 7 1.3501 -3.2116 1.1317 15 6 1.8440 -2.8036 2.4595 16 6 2.0572 -4.1314 3.2284 17 6 0.8631 -4.9814 2.7196 18 6 0.7201 -4.5348 1.2491 19 1 1.2269 -5.2458 0.5968 20 6 -0.7598 -4.4417 0.8723 21 7 -1.3575 -5.7789 0.9064 22 6 -2.6541 -5.9597 0.5052 23 1 -3.2362 -5.1167 0.1631 24 6 -3.2203 -7.2268 0.5370 25 7 -2.5108 -8.2542 0.9534 26 14 -4.9889 -7.4736 -0.0111 27 1 -5.0197 -7.7676 -1.4664 28 1 -5.5847 -8.6102 0.7362 29 1 -5.7684 -6.2392 0.2611 30 1 -0.3632 0.0847 -1.0242 31 1 -0.3633 -0.9293 0.4387 32 1 -0.3633 0.8446 0.5854 33 1 1.6675 2.1257 -0.0006 34 1 3.8805 3.2769 -0.0004 35 1 6.3130 3.1347 0.0001 36 1 7.4463 0.9535 0.0007 37 1 6.1703 -1.1182 0.0034 38 1 2.7866 -2.2646 2.3646 39 1 1.1025 -2.1864 2.9668 40 1 3.0076 -4.5913 2.9577 41 1 1.9939 -3.9739 4.3052 42 1 1.0928 -6.0451 2.7813 43 1 -0.0426 -4.7481 3.2794 44 1 -1.2756 -3.7950 1.5822 45 1 -0.8538 -4.0272 -0.1314 46 1 -0.8347 -6.5361 1.2133 47 1 -2.9063 -9.1397 0.9753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699755602.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:29 Heat of formation + Delta-G solvation = 36.831556 kcal Electronic energy + Delta-G solvation = -29032.778058 eV Core-core repulsion = 25180.607423 eV Total energy + Delta-G solvation = -3852.170635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.37348 -39.90549 -37.84203 -36.91954 -34.50911 -34.38424 -32.20450 -31.61011 -31.28258 -30.44200 -28.69357 -27.37550 -25.77326 -24.92879 -23.11862 -22.82976 -22.38557 -22.02305 -20.91851 -19.49818 -18.25395 -17.81631 -17.10734 -16.82714 -16.43017 -15.93051 -15.07152 -14.99744 -14.71245 -14.49063 -14.40116 -13.96686 -13.74936 -13.62050 -13.37916 -13.33873 -13.26772 -13.17893 -12.70060 -12.58889 -12.46833 -12.24525 -11.95496 -11.92418 -11.76263 -11.51668 -11.11643 -10.88137 -10.80513 -10.68955 -10.52179 -10.41020 -10.19408 -10.00875 -9.71045 -9.54190 -8.96045 -8.79623 -8.57553 -8.47024 -6.85310 -5.70398 -2.98346 0.00041 0.40567 1.65669 2.36616 2.62256 2.91517 3.48799 3.53730 3.55136 3.71680 3.99516 4.17982 4.30408 4.41003 4.53083 4.62989 4.66744 4.68431 4.74740 4.87585 4.95467 5.01665 5.06275 5.24775 5.39926 5.41720 5.45909 5.48618 5.57209 5.61581 5.64738 5.66765 5.75063 5.83118 5.90694 5.96519 6.00078 6.05706 6.06491 6.09361 6.18741 6.20692 6.44305 6.46411 6.55190 6.85110 7.02114 7.50024 7.57754 7.77231 8.16691 8.48604 9.59607 10.16119 10.51911 11.52719 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021226 B = 0.002545 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.795640 B =10998.684206 C =11699.797268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.102 4.102 3 C -0.063 4.063 4 C -0.090 4.090 5 C -0.099 4.099 6 C -0.112 4.112 7 C -0.106 4.106 8 C -0.084 4.084 9 C 0.122 3.878 10 N -0.441 5.441 11 C 0.143 3.857 12 C 0.588 3.412 13 O -0.509 6.509 14 N -0.597 5.597 15 C 0.099 3.901 16 C -0.132 4.132 17 C -0.121 4.121 18 C 0.130 3.870 19 H 0.080 0.920 20 C 0.145 3.855 21 N -0.728 5.728 22 C -0.233 4.233 23 H 0.070 0.930 24 C -0.015 4.015 25 N -0.935 5.935 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.145 0.855 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.015 0.985 45 H 0.041 0.959 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.145 23.622 4.173 30.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.105 4.105 3 C -0.089 4.089 4 C -0.092 4.092 5 C -0.118 4.118 6 C -0.130 4.130 7 C -0.126 4.126 8 C -0.103 4.103 9 C -0.001 4.001 10 N -0.150 5.150 11 C -0.013 4.013 12 C 0.373 3.627 13 O -0.382 6.382 14 N -0.331 5.331 15 C -0.024 4.024 16 C -0.170 4.170 17 C -0.159 4.159 18 C 0.028 3.972 19 H 0.098 0.902 20 C 0.017 3.983 21 N -0.373 5.373 22 C -0.364 4.364 23 H 0.088 0.912 24 C -0.211 4.211 25 N -0.584 5.584 26 Si 0.739 3.261 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.163 0.837 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.155 0.845 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.033 0.967 45 H 0.059 0.941 46 H 0.217 0.783 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 18.220 22.689 3.480 29.306 hybrid contribution -1.115 0.393 -0.258 1.210 sum 17.104 23.082 3.222 28.909 Atomic orbital electron populations 1.20863 0.89134 1.03776 1.03699 1.20509 0.98138 0.92318 0.99512 1.21288 0.92433 0.98324 0.96827 1.18934 0.94164 0.94573 1.01570 1.20981 0.94092 0.97030 0.99715 1.20973 0.94652 0.98059 0.99329 1.20914 1.00475 0.91998 0.99243 1.20876 0.91053 0.99503 0.98846 1.18889 0.94221 0.87638 0.99366 1.67921 1.05939 1.30302 1.10868 1.21198 0.90007 0.93513 0.96587 1.17429 0.80032 0.82262 0.82994 1.90879 1.46532 1.69109 1.31664 1.48385 1.57374 1.19636 1.07728 1.22349 0.99092 0.97831 0.83097 1.22777 0.99500 0.94868 0.99860 1.22693 0.98428 1.00620 0.94146 1.21922 0.95357 0.82492 0.97440 0.90226 1.20983 0.88749 0.89593 0.98996 1.42202 1.12432 1.03401 1.79223 1.19212 0.88473 0.93394 1.35323 0.91248 1.24722 0.98343 0.95634 1.02409 1.69659 1.36133 0.99033 1.53563 0.86177 0.84650 0.77167 0.78145 1.21740 1.21822 1.20813 0.89789 0.90723 0.90561 0.83693 0.85113 0.85436 0.85157 0.84506 0.90917 0.91306 0.90627 0.89906 0.89552 0.89790 0.96700 0.94117 0.78304 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 9.67 36.00 0.35 -0.94 16 2 C -0.10 -1.23 5.89 -104.48 -0.62 -1.85 16 3 C -0.06 -0.61 9.54 -39.26 -0.37 -0.98 16 4 C -0.09 -0.92 5.75 -106.72 -0.61 -1.54 16 5 C -0.10 -0.74 9.77 -39.52 -0.39 -1.12 16 6 C -0.11 -0.72 9.96 -39.89 -0.40 -1.12 16 7 C -0.11 -0.75 9.94 -39.94 -0.40 -1.15 16 8 C -0.08 -0.81 9.99 -39.41 -0.39 -1.20 16 9 C 0.12 1.47 6.61 -84.85 -0.56 0.91 16 10 N -0.44 -6.39 10.05 -7.54 -0.08 -6.47 16 11 C 0.14 2.11 5.41 -82.96 -0.45 1.66 16 12 C 0.59 10.29 5.60 -12.13 -0.07 10.22 16 13 O -0.51 -10.88 15.91 5.37 0.09 -10.80 16 14 N -0.60 -9.56 3.06 -163.96 -0.50 -10.06 16 15 C 0.10 1.22 6.73 -2.53 -0.02 1.20 16 16 C -0.13 -1.50 7.09 -24.58 -0.17 -1.67 16 17 C -0.12 -1.80 6.04 -24.89 -0.15 -1.95 16 18 C 0.13 2.35 2.99 -66.95 -0.20 2.15 16 19 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 20 C 0.15 3.19 5.64 -4.04 -0.02 3.17 16 21 N -0.73 -19.16 5.45 -59.91 -0.33 -19.48 16 22 C -0.23 -6.77 9.99 -15.06 -0.15 -6.92 16 23 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 24 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 25 N -0.93 -28.75 13.06 55.49 0.72 -28.02 16 26 Si 0.91 23.06 29.55 -169.99 -5.02 18.04 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 28 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 29 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.98 6.87 -51.93 -0.36 0.62 16 32 H 0.08 0.61 8.11 -51.93 -0.42 0.19 16 33 H 0.15 0.91 8.06 -52.48 -0.42 0.48 16 34 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 35 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 36 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 38 H 0.07 0.86 7.44 -51.93 -0.39 0.47 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.08 1.31 7.78 -51.93 -0.40 0.91 16 44 H 0.02 0.33 8.06 -51.93 -0.42 -0.09 16 45 H 0.04 1.00 6.59 -51.93 -0.34 0.66 16 46 H 0.38 10.36 7.41 -40.82 -0.30 10.06 16 47 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 388.04 15.07 5.85 5.85 Total: -1.00 -35.49 388.04 -10.82 -46.30 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.83 Total: 6.32 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -4.72 Total: -1.67 kcal Atomic # 7 Polarization: -63.86 SS G_CDS: -0.18 Total: -64.04 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.49 -10.82 -46.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699755602.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.136 kcal (2) G-P(sol) polarization free energy of solvation -35.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds