Wall clock time and date at job start Tue Mar 31 2020 23:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36543 * 120.09545 * 2 1 4 4 C 1.40708 * 118.24833 * 179.97438 * 3 2 1 5 5 C 1.40427 * 121.28937 * 179.97438 * 4 3 2 6 6 C 1.36130 * 119.65142 * 180.02562 * 5 4 3 7 7 C 1.39444 * 120.92158 * 359.97438 * 6 5 4 8 8 C 1.35990 * 121.08278 * 359.96029 * 7 6 5 9 9 C 1.40829 * 119.74145 * 0.09025 * 8 7 6 10 10 N 1.33243 * 120.98936 * 179.89038 * 9 8 7 11 11 C 1.31897 * 121.29757 * 180.02562 * 10 9 8 12 12 C 1.48275 * 119.24015 * 179.97438 * 11 10 9 13 13 O 1.21500 * 120.00010 * 256.09242 * 12 11 10 14 14 N 1.34776 * 120.00178 * 76.08788 * 12 11 10 15 15 C 1.47425 * 125.64346 * 5.15445 * 14 12 11 16 16 C 1.54910 * 104.82866 * 204.08731 * 15 14 12 17 17 C 1.55155 * 101.58517 * 322.99159 * 16 15 14 18 18 C 1.47022 * 125.64918 * 184.84057 * 14 12 11 19 19 H 1.08993 * 109.87948 * 59.56479 * 18 14 12 20 20 C 1.52996 * 109.88293 * 298.39809 * 18 14 12 21 21 N 1.46504 * 109.47101 * 176.28077 * 20 18 14 22 22 C 1.36930 * 120.00036 * 184.96786 * 21 20 18 23 23 H 1.08003 * 120.00172 * 0.02562 * 22 21 20 24 24 C 1.38818 * 120.00035 * 179.97438 * 22 21 20 25 25 N 1.31618 * 119.99585 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99973 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.46914 * 90.00451 * 26 24 22 28 28 H 1.48502 * 109.46988 * 210.00073 * 26 24 22 29 29 H 1.48501 * 109.47273 * 330.00218 * 26 24 22 30 30 H 1.08999 * 109.46606 * 85.27404 * 1 2 3 31 31 H 1.08994 * 109.46828 * 205.27255 * 1 2 3 32 32 H 1.08998 * 109.47030 * 325.27627 * 1 2 3 33 33 H 1.08004 * 120.87233 * 359.96030 * 3 2 1 34 34 H 1.08004 * 120.17377 * 0.02562 * 5 4 3 35 35 H 1.08002 * 119.54047 * 180.02562 * 6 5 4 36 36 H 1.08000 * 119.45418 * 179.97438 * 7 6 5 37 37 H 1.07999 * 120.12515 * 179.97438 * 8 7 6 38 38 H 1.08997 * 110.37156 * 322.92505 * 15 14 12 39 39 H 1.08999 * 110.36820 * 85.25563 * 15 14 12 40 40 H 1.09002 * 111.00318 * 81.06764 * 16 15 14 41 41 H 1.09003 * 111.00805 * 204.91522 * 16 15 14 42 42 H 1.08999 * 110.72204 * 153.86182 * 17 16 15 43 43 H 1.09004 * 110.72094 * 277.14172 * 17 16 15 44 44 H 1.09003 * 109.47430 * 296.27916 * 20 18 14 45 45 H 1.08999 * 109.47095 * 56.28049 * 20 18 14 46 46 H 0.96999 * 119.99894 * 4.96895 * 21 20 18 47 47 H 0.97007 * 119.99680 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1917 1.1814 0.0000 4 6 3.5980 1.1360 0.0006 5 6 4.3656 2.3119 0.0001 6 6 5.7244 2.2292 0.0001 7 6 6.3669 0.9916 0.0011 8 6 5.6568 -0.1682 0.0030 9 6 4.2491 -0.1254 0.0019 10 7 3.5287 -1.2463 0.0015 11 6 2.2102 -1.2134 0.0000 12 6 1.4538 -2.4887 -0.0010 13 8 0.9276 -2.8821 -1.0230 14 7 1.3501 -3.2116 1.1317 15 6 1.8440 -2.8036 2.4595 16 6 2.0572 -4.1314 3.2284 17 6 0.8631 -4.9814 2.7196 18 6 0.7201 -4.5348 1.2491 19 1 1.2269 -5.2458 0.5968 20 6 -0.7598 -4.4417 0.8723 21 7 -1.3575 -5.7789 0.9064 22 6 -2.6541 -5.9597 0.5052 23 1 -3.2362 -5.1167 0.1631 24 6 -3.2203 -7.2268 0.5370 25 7 -2.5108 -8.2542 0.9534 26 14 -4.9889 -7.4736 -0.0111 27 1 -5.0197 -7.7676 -1.4664 28 1 -5.5847 -8.6102 0.7362 29 1 -5.7684 -6.2392 0.2611 30 1 -0.3632 0.0847 -1.0242 31 1 -0.3633 -0.9293 0.4387 32 1 -0.3633 0.8446 0.5854 33 1 1.6675 2.1257 -0.0006 34 1 3.8805 3.2769 -0.0004 35 1 6.3130 3.1347 0.0001 36 1 7.4463 0.9535 0.0007 37 1 6.1703 -1.1182 0.0034 38 1 2.7866 -2.2646 2.3646 39 1 1.1025 -2.1864 2.9668 40 1 3.0076 -4.5913 2.9577 41 1 1.9939 -3.9739 4.3052 42 1 1.0928 -6.0451 2.7813 43 1 -0.0426 -4.7481 3.2794 44 1 -1.2756 -3.7950 1.5822 45 1 -0.8538 -4.0272 -0.1314 46 1 -0.8347 -6.5361 1.2133 47 1 -2.9063 -9.1397 0.9753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699755602.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:28 Heat of formation + Delta-G solvation = 13.819839 kcal Electronic energy + Delta-G solvation = -29033.775921 eV Core-core repulsion = 25180.607423 eV Total energy + Delta-G solvation = -3853.168498 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.27772 -41.08385 -38.96092 -37.94532 -36.45234 -35.24235 -33.60585 -32.95931 -32.48960 -31.26256 -30.33927 -28.14771 -26.88353 -26.59255 -24.69087 -23.69757 -23.48527 -23.03025 -22.10171 -20.81018 -19.41709 -19.03276 -18.62658 -17.85523 -17.68163 -17.05245 -16.46177 -16.03441 -15.79603 -15.65260 -15.44124 -15.18663 -15.11016 -15.05685 -14.83604 -14.37855 -14.20427 -14.13827 -14.03299 -13.85523 -13.71845 -13.31108 -13.10877 -12.96203 -12.79863 -12.69098 -12.55612 -12.44846 -12.22757 -12.12453 -11.93559 -11.82536 -11.66476 -11.42424 -11.41375 -10.97870 -10.59767 -9.86999 -9.73413 -9.23841 -9.05995 -7.98408 -5.28331 -0.74560 -0.35761 0.94924 1.21310 1.44052 1.47525 1.55191 1.60722 1.85235 2.53879 2.91621 3.04938 3.34046 3.38760 3.53146 3.59008 3.64541 3.66837 3.79929 3.89901 4.04882 4.06176 4.18139 4.20616 4.27273 4.32534 4.38922 4.40182 4.45969 4.59989 4.61767 4.75093 4.77184 4.83133 4.90849 4.97204 4.99786 5.04498 5.06090 5.09097 5.11814 5.27908 5.33449 5.38069 5.44314 5.45571 5.49422 5.86764 6.22388 6.29535 6.62195 6.84341 7.29649 7.99957 8.28522 9.24859 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021226 B = 0.002545 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.795640 B =10998.684206 C =11699.797268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.123 4.123 3 C -0.043 4.043 4 C -0.102 4.102 5 C -0.097 4.097 6 C -0.106 4.106 7 C -0.089 4.089 8 C -0.113 4.113 9 C 0.097 3.903 10 N -0.470 5.470 11 C 0.119 3.881 12 C 0.585 3.415 13 O -0.566 6.566 14 N -0.596 5.596 15 C 0.098 3.902 16 C -0.115 4.115 17 C -0.115 4.115 18 C 0.135 3.865 19 H 0.053 0.947 20 C 0.155 3.845 21 N -0.736 5.736 22 C -0.249 4.249 23 H 0.068 0.932 24 C -0.071 4.071 25 N -0.966 5.966 26 Si 0.976 3.024 27 H -0.289 1.289 28 H -0.288 1.288 29 H -0.269 1.269 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.110 0.890 33 H 0.186 0.814 34 H 0.165 0.835 35 H 0.165 0.835 36 H 0.160 0.840 37 H 0.133 0.867 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.118 0.882 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.021 0.979 45 H 0.010 0.990 46 H 0.377 0.623 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.640 27.505 5.568 34.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.126 4.126 3 C -0.068 4.068 4 C -0.104 4.104 5 C -0.116 4.116 6 C -0.123 4.123 7 C -0.109 4.109 8 C -0.132 4.132 9 C -0.026 4.026 10 N -0.180 5.180 11 C -0.035 4.035 12 C 0.371 3.629 13 O -0.443 6.443 14 N -0.328 5.328 15 C -0.023 4.023 16 C -0.153 4.153 17 C -0.153 4.153 18 C 0.031 3.969 19 H 0.071 0.929 20 C 0.027 3.973 21 N -0.379 5.379 22 C -0.381 4.381 23 H 0.086 0.914 24 C -0.264 4.264 25 N -0.616 5.616 26 Si 0.805 3.195 27 H -0.216 1.216 28 H -0.214 1.214 29 H -0.194 1.194 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.129 0.871 33 H 0.204 0.796 34 H 0.183 0.817 35 H 0.183 0.817 36 H 0.178 0.822 37 H 0.151 0.849 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.136 0.864 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.039 0.961 45 H 0.028 0.972 46 H 0.210 0.790 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 19.738 26.608 4.912 33.492 hybrid contribution -1.375 -0.663 -0.727 1.691 sum 18.362 25.945 4.185 32.060 Atomic orbital electron populations 1.20818 0.88913 1.03510 1.03606 1.20563 0.98373 0.92274 1.01353 1.21707 0.92379 0.98748 0.93978 1.19249 0.94745 0.94912 1.01495 1.21387 0.94519 0.97185 0.98465 1.21470 0.94739 0.99012 0.97099 1.21343 1.01963 0.91383 0.96205 1.21017 0.90349 1.00723 1.01082 1.19315 0.95150 0.87927 1.00248 1.67778 1.05934 1.32290 1.11980 1.20803 0.90367 0.92721 0.99615 1.18056 0.79354 0.83075 0.82369 1.90821 1.49003 1.70840 1.33653 1.48489 1.56602 1.18644 1.09092 1.22591 0.99854 0.98718 0.81176 1.22786 0.97877 0.93026 1.01603 1.22605 1.00001 1.01113 0.91577 1.21686 0.92403 0.83528 0.99246 0.92888 1.20917 0.91469 0.87521 0.97370 1.42315 1.11905 1.04699 1.79026 1.19545 0.89621 0.93668 1.35248 0.91406 1.25582 1.02714 0.95274 1.02809 1.69810 1.37889 0.99282 1.54597 0.85106 0.79609 0.77451 0.77375 1.21636 1.21376 1.19421 0.90508 0.93869 0.87132 0.79646 0.81719 0.81718 0.82201 0.84916 0.90042 0.89673 0.89982 0.86400 0.89782 0.90325 0.96128 0.97179 0.79017 0.93753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.50 9.67 71.24 0.69 -1.81 16 2 C -0.12 -2.98 5.89 -19.77 -0.12 -3.09 16 3 C -0.04 -0.73 9.54 22.48 0.21 -0.51 16 4 C -0.10 -1.85 5.75 -21.22 -0.12 -1.97 16 5 C -0.10 -1.00 9.77 22.31 0.22 -0.78 16 6 C -0.11 -0.85 9.96 22.07 0.22 -0.63 16 7 C -0.09 -0.96 9.94 22.04 0.22 -0.74 16 8 C -0.11 -2.06 9.99 22.38 0.22 -1.84 16 9 C 0.10 2.30 6.61 40.48 0.27 2.57 16 10 N -0.47 -14.23 10.05 -177.77 -1.79 -16.01 16 11 C 0.12 3.72 5.41 42.29 0.23 3.94 16 12 C 0.58 22.24 5.60 86.91 0.49 22.73 16 13 O -0.57 -26.80 15.91 -3.72 -0.06 -26.85 16 14 N -0.60 -20.31 3.06 -790.94 -2.42 -22.74 16 15 C 0.10 2.39 6.73 86.86 0.58 2.97 16 16 C -0.12 -2.47 7.09 31.99 0.23 -2.24 16 17 C -0.11 -3.48 6.04 31.79 0.19 -3.29 16 18 C 0.14 5.21 2.99 45.34 0.14 5.35 16 19 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 20 C 0.15 7.31 5.64 86.38 0.49 7.79 16 21 N -0.74 -40.76 5.45 -343.45 -1.87 -42.63 16 22 C -0.25 -14.99 9.99 84.04 0.84 -14.15 16 23 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 24 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 25 N -0.97 -60.77 13.06 21.65 0.28 -60.49 16 26 Si 0.98 48.16 29.55 68.60 2.03 50.18 16 27 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 28 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 29 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.04 1.22 6.87 -2.39 -0.02 1.20 16 32 H 0.11 1.59 8.11 -2.39 -0.02 1.57 16 33 H 0.19 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 35 H 0.17 0.17 8.06 -2.91 -0.02 0.15 16 36 H 0.16 0.74 8.06 -2.91 -0.02 0.71 16 37 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 38 H 0.08 1.89 7.44 -2.39 -0.02 1.87 16 39 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.12 1.78 8.14 -2.39 -0.02 1.77 16 42 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 43 H 0.08 2.48 7.78 -2.39 -0.02 2.46 16 44 H 0.02 0.96 8.06 -2.39 -0.02 0.94 16 45 H 0.01 0.54 6.59 -2.39 -0.02 0.53 16 46 H 0.38 21.50 7.41 -92.71 -0.69 20.81 16 47 H 0.25 15.33 8.31 -92.70 -0.77 14.56 16 Total: -1.00 -83.55 388.04 1.93 -81.62 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 0.30 Total: 26.43 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 5.46 Total: 10.49 kcal Atomic # 7 Polarization: -136.07 SS G_CDS: -5.80 Total: -141.87 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.06 Total: -26.85 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.03 Total: 50.18 kcal Total: -83.55 1.93 -81.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699755602.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.443 kcal (2) G-P(sol) polarization free energy of solvation -83.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds