Wall clock time and date at job start Tue Mar 31 2020 22:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99738 * 2 1 4 4 H 1.48495 * 109.47001 * 269.99714 * 3 2 1 5 5 H 1.48507 * 109.47288 * 29.99793 * 3 2 1 6 6 H 1.48507 * 109.47142 * 149.99753 * 3 2 1 7 7 C 1.38806 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99566 * 158.95021 * 7 2 1 9 9 N 1.36940 * 120.00292 * 338.95529 * 7 2 1 10 10 C 1.46493 * 119.99992 * 323.51187 * 9 7 2 11 11 C 1.53004 * 109.47177 * 270.00079 * 10 9 7 12 12 C 1.52998 * 109.47099 * 179.97438 * 11 10 9 13 13 N 1.46501 * 109.46968 * 179.97438 * 12 11 10 14 14 C 1.34775 * 119.99884 * 180.02562 * 13 12 11 15 15 O 1.21582 * 120.00003 * 359.97438 * 14 13 12 16 16 C 1.47556 * 119.99787 * 180.02562 * 14 13 12 17 17 C 1.38696 * 120.39040 * 353.99959 * 16 14 13 18 18 C 1.38964 * 120.54367 * 180.28811 * 17 16 14 19 19 C 1.36213 * 121.23099 * 359.71825 * 18 17 16 20 20 C 1.40706 * 120.20316 * 0.02562 * 19 18 17 21 21 N 1.33684 * 120.93882 * 179.97438 * 20 19 18 22 22 C 1.31068 * 121.34446 * 180.02562 * 21 20 19 23 23 C 1.39341 * 121.70181 * 0.02562 * 22 21 20 24 24 C 1.36668 * 119.87206 * 359.97438 * 23 22 21 25 25 C 1.40472 * 118.17016 * 359.97438 * 24 23 22 26 26 C 1.46505 * 119.99820 * 143.51102 * 9 7 2 27 27 C 1.52999 * 117.50146 * 3.23996 * 26 9 7 28 28 C 1.52996 * 117.50000 * 294.57903 * 26 9 7 29 29 H 0.96997 * 120.00238 * 5.36351 * 1 2 3 30 30 H 1.08994 * 109.47513 * 149.99671 * 10 9 7 31 31 H 1.09004 * 109.47379 * 29.99802 * 10 9 7 32 32 H 1.09003 * 109.47170 * 59.99687 * 11 10 9 33 33 H 1.09004 * 109.46740 * 300.00114 * 11 10 9 34 34 H 1.08998 * 109.46859 * 60.00179 * 12 11 10 35 35 H 1.08998 * 109.47204 * 299.99529 * 12 11 10 36 36 H 0.97003 * 119.99771 * 0.02562 * 13 12 11 37 37 H 1.08002 * 119.72868 * 359.97438 * 17 16 14 38 38 H 1.07998 * 119.38700 * 179.70344 * 18 17 16 39 39 H 1.08007 * 119.89798 * 180.02562 * 19 18 17 40 40 H 1.08001 * 119.14938 * 180.02562 * 22 21 20 41 41 H 1.08003 * 120.05988 * 179.97438 * 23 22 21 42 42 H 1.08007 * 120.91517 * 180.02562 * 24 23 22 43 43 H 1.08992 * 115.54614 * 148.90998 * 26 9 7 44 44 H 1.08998 * 117.49643 * 0.02562 * 27 26 9 45 45 H 1.09000 * 117.49938 * 145.01916 * 27 26 9 46 46 H 1.08993 * 117.50281 * 214.98627 * 28 26 9 47 47 H 1.09002 * 117.49884 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6528 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0363 -1.2334 -0.3354 9 7 1.3942 -2.3483 0.4269 10 6 0.4453 -2.2986 1.5419 11 6 1.1938 -2.5158 2.8586 12 6 0.2029 -2.4633 4.0232 13 7 0.9195 -2.6718 5.2838 14 6 0.2454 -2.6670 6.4509 15 8 -0.9573 -2.4891 6.4575 16 6 0.9672 -2.8765 7.7206 17 6 2.3155 -3.2019 7.7158 18 6 2.9970 -3.4058 8.9096 19 6 2.3672 -3.2874 10.1115 20 6 1.0013 -2.9536 10.1651 21 7 0.3684 -2.8341 11.3366 22 6 -0.9037 -2.5240 11.3957 23 6 -1.6582 -2.3047 10.2450 24 6 -1.0710 -2.4113 9.0154 25 6 0.2928 -2.7427 8.9584 26 6 1.6839 -3.6243 -0.2321 27 6 2.7397 -3.6238 -1.3395 28 6 1.2584 -3.7772 -1.6937 29 1 -0.4850 0.8363 -0.0785 30 1 -0.3039 -3.0803 1.4166 31 1 -0.0447 -1.3251 1.5589 32 1 1.9430 -1.7341 2.9839 33 1 1.6838 -3.4893 2.8416 34 1 -0.5465 -3.2448 3.8980 35 1 -0.2867 -1.4896 4.0400 36 1 1.8791 -2.8134 5.2785 37 1 2.8388 -3.3026 6.7765 38 1 4.0456 -3.6631 8.8839 39 1 2.9179 -3.4501 11.0263 40 1 -1.3794 -2.4363 12.3613 41 1 -2.7050 -2.0509 10.3246 42 1 -1.6398 -2.2444 8.1126 43 1 1.6230 -4.5067 0.4048 44 1 3.2189 -2.6742 -1.5774 45 1 3.3730 -4.5061 -1.4314 46 1 0.9178 -4.7603 -2.0186 47 1 0.7625 -2.9286 -2.1649 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713041916.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:39 Heat of formation + Delta-G solvation = 71.728150 kcal Electronic energy + Delta-G solvation = -27961.719528 eV Core-core repulsion = 24111.062123 eV Total energy + Delta-G solvation = -3850.657405 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.26997 -39.46311 -37.22213 -37.12086 -35.48312 -33.65338 -33.51510 -31.83831 -30.81527 -30.51870 -29.18832 -25.71147 -24.77291 -23.95528 -23.64748 -22.72411 -21.46613 -21.11862 -20.53943 -19.67322 -18.44366 -17.78141 -17.06582 -16.45843 -16.25726 -15.79236 -15.63679 -15.31651 -15.04052 -14.71784 -14.55907 -14.31689 -14.03854 -13.95321 -13.54549 -13.40001 -12.98232 -12.66126 -12.40259 -12.21906 -12.03884 -11.93004 -11.63972 -11.53327 -11.04718 -10.87796 -10.77592 -10.71097 -10.69191 -10.35683 -10.23114 -10.05795 -9.70570 -9.60998 -9.39059 -9.27677 -9.09342 -9.04901 -8.54237 -8.52085 -6.53398 -5.88959 -3.43559 -0.11447 0.54166 1.53171 2.41631 3.06420 3.12063 3.29173 3.37777 3.39277 3.89929 3.98780 4.35402 4.38570 4.42186 4.53861 4.63493 4.81081 4.85377 4.90756 5.06405 5.11151 5.17210 5.26804 5.49343 5.54459 5.58035 5.68478 5.70784 5.86672 5.88426 5.94453 5.95105 6.07985 6.09125 6.23026 6.25023 6.33191 6.38810 6.46913 6.51529 6.61850 6.62657 6.70076 7.00757 7.05588 7.20490 7.47528 7.60852 7.62889 7.77589 8.14930 8.45287 9.10202 9.72923 10.29646 11.12618 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015185 B = 0.002255 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.445852 B =12411.294386 C =12794.611700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.015 3.985 3 Si 0.898 3.102 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.263 4.263 8 H 0.065 0.935 9 N -0.552 5.552 10 C 0.151 3.849 11 C -0.147 4.147 12 C 0.120 3.880 13 N -0.714 5.714 14 C 0.556 3.444 15 O -0.537 6.537 16 C -0.108 4.108 17 C -0.076 4.076 18 C -0.110 4.110 19 C -0.069 4.069 20 C 0.118 3.882 21 N -0.480 5.480 22 C 0.132 3.868 23 C -0.181 4.181 24 C -0.058 4.058 25 C -0.068 4.068 26 C 0.121 3.879 27 C -0.197 4.197 28 C -0.222 4.222 29 H 0.257 0.743 30 H 0.028 0.972 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.399 0.601 37 H 0.135 0.865 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.159 0.841 41 H 0.139 0.861 42 H 0.180 0.820 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.474 -7.377 18.815 20.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.186 4.186 3 Si 0.727 3.273 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.392 4.392 8 H 0.082 0.918 9 N -0.268 5.268 10 C 0.024 3.976 11 C -0.187 4.187 12 C -0.003 4.003 13 N -0.365 5.365 14 C 0.343 3.657 15 O -0.416 6.416 16 C -0.112 4.112 17 C -0.095 4.095 18 C -0.130 4.130 19 C -0.088 4.088 20 C -0.003 4.003 21 N -0.188 5.188 22 C -0.040 4.040 23 C -0.201 4.201 24 C -0.083 4.083 25 C -0.070 4.070 26 C 0.012 3.988 27 C -0.235 4.235 28 C -0.263 4.263 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.120 0.880 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.235 0.765 37 H 0.152 0.848 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.176 0.824 41 H 0.156 0.844 42 H 0.196 0.804 43 H 0.103 0.897 44 H 0.115 0.885 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.059 -7.232 19.576 20.971 hybrid contribution 0.465 0.934 -0.919 1.390 sum 2.525 -6.298 18.657 19.853 Atomic orbital electron populations 1.69865 1.05551 1.26202 1.51299 1.25222 0.95100 0.98710 0.99573 0.86379 0.79465 0.83554 0.77931 1.21202 1.21382 1.20237 1.18996 0.94302 0.84756 1.41153 0.91788 1.43386 1.49439 1.01930 1.32050 1.20845 0.90387 1.03255 0.83066 1.22479 0.98950 1.01314 0.95957 1.21545 0.95562 1.01965 0.81247 1.46129 1.11887 1.71941 1.06511 1.18104 0.86959 0.77130 0.83524 1.90557 1.14265 1.50299 1.86526 1.19971 0.94300 1.04086 0.92796 1.21483 0.92912 0.95973 0.99176 1.20839 1.00725 0.99845 0.91586 1.20996 0.92088 0.96839 0.98889 1.18855 0.94519 0.98859 0.88088 1.68049 1.10554 1.13459 1.26765 1.23014 0.89582 0.92522 0.98918 1.22073 1.02002 1.02648 0.93361 1.22706 0.93704 0.91236 1.00699 1.18653 0.95011 1.00653 0.92732 1.21212 1.00406 0.90348 0.86856 1.23027 0.91984 1.01775 1.06700 1.23360 0.97218 1.00728 1.05012 0.93223 0.95334 0.87999 0.91493 0.93109 0.91562 0.91066 0.76546 0.84763 0.84430 0.84343 0.82387 0.84355 0.80354 0.89687 0.88510 0.90850 0.91289 0.89028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.41 11.36 55.49 0.63 -23.78 16 2 C 0.01 0.38 4.98 -17.43 -0.09 0.30 16 3 Si 0.90 20.74 29.61 -169.99 -5.03 15.71 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.26 -6.73 8.58 -15.06 -0.13 -6.86 16 8 H 0.06 1.65 6.61 -52.48 -0.35 1.31 16 9 N -0.55 -12.89 2.77 -165.67 -0.46 -13.34 16 10 C 0.15 3.25 5.33 -4.04 -0.02 3.23 16 11 C -0.15 -2.52 5.65 -26.73 -0.15 -2.67 16 12 C 0.12 1.86 5.67 -4.04 -0.02 1.84 16 13 N -0.71 -9.37 5.51 -61.35 -0.34 -9.71 16 14 C 0.56 7.91 7.73 -12.46 -0.10 7.81 16 15 O -0.54 -9.06 13.41 5.29 0.07 -8.99 16 16 C -0.11 -1.32 5.90 -104.65 -0.62 -1.94 16 17 C -0.08 -0.71 9.51 -39.14 -0.37 -1.08 16 18 C -0.11 -0.89 9.92 -40.04 -0.40 -1.29 16 19 C -0.07 -0.66 9.96 -39.38 -0.39 -1.05 16 20 C 0.12 1.43 6.60 -84.88 -0.56 0.87 16 21 N -0.48 -5.69 10.34 -10.99 -0.11 -5.80 16 22 C 0.13 1.28 11.15 -17.47 -0.19 1.08 16 23 C -0.18 -1.79 10.03 -39.74 -0.40 -2.19 16 24 C -0.06 -0.73 9.29 -39.31 -0.37 -1.10 16 25 C -0.07 -0.88 5.76 -106.53 -0.61 -1.49 16 26 C 0.12 2.49 6.56 -67.93 -0.45 2.04 16 27 C -0.20 -3.77 9.80 -26.69 -0.26 -4.03 16 28 C -0.22 -4.45 10.36 -26.70 -0.28 -4.72 16 29 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 30 H 0.03 0.59 8.07 -51.93 -0.42 0.17 16 31 H 0.10 2.53 5.42 -51.93 -0.28 2.25 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.40 4.19 6.54 -40.82 -0.27 3.92 16 37 H 0.13 0.92 6.43 -52.49 -0.34 0.58 16 38 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16 40 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 42 H 0.18 2.47 4.97 -52.50 -0.26 2.21 16 43 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 44 H 0.10 2.03 6.40 -51.93 -0.33 1.69 16 45 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.09 2.11 8.14 -51.93 -0.42 1.68 16 LS Contribution 387.24 15.07 5.84 5.84 Total: -1.00 -30.85 387.24 -11.26 -42.11 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -6.45 Total: 9.21 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -5.40 Total: -11.25 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.28 Total: -52.64 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.07 Total: -8.99 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.85 -11.26 -42.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713041916.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.842 kcal (2) G-P(sol) polarization free energy of solvation -30.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds