Wall clock time and date at job start Tue Mar 31 2020 22:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99738 * 2 1 4 4 H 1.48495 * 109.47001 * 269.99714 * 3 2 1 5 5 H 1.48507 * 109.47288 * 29.99793 * 3 2 1 6 6 H 1.48507 * 109.47142 * 149.99753 * 3 2 1 7 7 C 1.38806 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99566 * 158.95021 * 7 2 1 9 9 N 1.36940 * 120.00292 * 338.95529 * 7 2 1 10 10 C 1.46493 * 119.99992 * 323.51187 * 9 7 2 11 11 C 1.53004 * 109.47177 * 270.00079 * 10 9 7 12 12 C 1.52998 * 109.47099 * 179.97438 * 11 10 9 13 13 N 1.46501 * 109.46968 * 179.97438 * 12 11 10 14 14 C 1.34775 * 119.99884 * 180.02562 * 13 12 11 15 15 O 1.21582 * 120.00003 * 359.97438 * 14 13 12 16 16 C 1.47556 * 119.99787 * 180.02562 * 14 13 12 17 17 C 1.38696 * 120.39040 * 353.99959 * 16 14 13 18 18 C 1.38964 * 120.54367 * 180.28811 * 17 16 14 19 19 C 1.36213 * 121.23099 * 359.71825 * 18 17 16 20 20 C 1.40706 * 120.20316 * 0.02562 * 19 18 17 21 21 N 1.33684 * 120.93882 * 179.97438 * 20 19 18 22 22 C 1.31068 * 121.34446 * 180.02562 * 21 20 19 23 23 C 1.39341 * 121.70181 * 0.02562 * 22 21 20 24 24 C 1.36668 * 119.87206 * 359.97438 * 23 22 21 25 25 C 1.40472 * 118.17016 * 359.97438 * 24 23 22 26 26 C 1.46505 * 119.99820 * 143.51102 * 9 7 2 27 27 C 1.52999 * 117.50146 * 3.23996 * 26 9 7 28 28 C 1.52996 * 117.50000 * 294.57903 * 26 9 7 29 29 H 0.96997 * 120.00238 * 5.36351 * 1 2 3 30 30 H 1.08994 * 109.47513 * 149.99671 * 10 9 7 31 31 H 1.09004 * 109.47379 * 29.99802 * 10 9 7 32 32 H 1.09003 * 109.47170 * 59.99687 * 11 10 9 33 33 H 1.09004 * 109.46740 * 300.00114 * 11 10 9 34 34 H 1.08998 * 109.46859 * 60.00179 * 12 11 10 35 35 H 1.08998 * 109.47204 * 299.99529 * 12 11 10 36 36 H 0.97003 * 119.99771 * 0.02562 * 13 12 11 37 37 H 1.08002 * 119.72868 * 359.97438 * 17 16 14 38 38 H 1.07998 * 119.38700 * 179.70344 * 18 17 16 39 39 H 1.08007 * 119.89798 * 180.02562 * 19 18 17 40 40 H 1.08001 * 119.14938 * 180.02562 * 22 21 20 41 41 H 1.08003 * 120.05988 * 179.97438 * 23 22 21 42 42 H 1.08007 * 120.91517 * 180.02562 * 24 23 22 43 43 H 1.08992 * 115.54614 * 148.90998 * 26 9 7 44 44 H 1.08998 * 117.49643 * 0.02562 * 27 26 9 45 45 H 1.09000 * 117.49938 * 145.01916 * 27 26 9 46 46 H 1.08993 * 117.50281 * 214.98627 * 28 26 9 47 47 H 1.09002 * 117.49884 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6528 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0363 -1.2334 -0.3354 9 7 1.3942 -2.3483 0.4269 10 6 0.4453 -2.2986 1.5419 11 6 1.1938 -2.5158 2.8586 12 6 0.2029 -2.4633 4.0232 13 7 0.9195 -2.6718 5.2838 14 6 0.2454 -2.6670 6.4509 15 8 -0.9573 -2.4891 6.4575 16 6 0.9672 -2.8765 7.7206 17 6 2.3155 -3.2019 7.7158 18 6 2.9970 -3.4058 8.9096 19 6 2.3672 -3.2874 10.1115 20 6 1.0013 -2.9536 10.1651 21 7 0.3684 -2.8341 11.3366 22 6 -0.9037 -2.5240 11.3957 23 6 -1.6582 -2.3047 10.2450 24 6 -1.0710 -2.4113 9.0154 25 6 0.2928 -2.7427 8.9584 26 6 1.6839 -3.6243 -0.2321 27 6 2.7397 -3.6238 -1.3395 28 6 1.2584 -3.7772 -1.6937 29 1 -0.4850 0.8363 -0.0785 30 1 -0.3039 -3.0803 1.4166 31 1 -0.0447 -1.3251 1.5589 32 1 1.9430 -1.7341 2.9839 33 1 1.6838 -3.4893 2.8416 34 1 -0.5465 -3.2448 3.8980 35 1 -0.2867 -1.4896 4.0400 36 1 1.8791 -2.8134 5.2785 37 1 2.8388 -3.3026 6.7765 38 1 4.0456 -3.6631 8.8839 39 1 2.9179 -3.4501 11.0263 40 1 -1.3794 -2.4363 12.3613 41 1 -2.7050 -2.0509 10.3246 42 1 -1.6398 -2.2444 8.1126 43 1 1.6230 -4.5067 0.4048 44 1 3.2189 -2.6742 -1.5774 45 1 3.3730 -4.5061 -1.4314 46 1 0.9178 -4.7603 -2.0186 47 1 0.7625 -2.9286 -2.1649 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713041916.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:39 Heat of formation + Delta-G solvation = 54.385739 kcal Electronic energy + Delta-G solvation = -27962.471551 eV Core-core repulsion = 24111.062123 eV Total energy + Delta-G solvation = -3851.409429 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.11338 -40.50955 -38.83973 -37.94963 -36.78929 -35.29372 -34.35324 -33.44653 -31.75028 -31.56472 -30.54649 -27.28426 -25.86233 -25.21805 -24.45212 -23.88253 -23.01604 -22.51409 -21.72659 -21.32926 -19.28887 -18.62620 -18.24757 -17.85410 -17.30551 -17.16923 -16.93095 -16.63670 -16.38973 -15.82925 -15.75801 -15.43584 -15.29517 -14.91057 -14.80395 -14.41680 -14.15101 -13.97511 -13.75282 -13.64794 -13.20892 -13.08323 -12.81854 -12.70071 -12.59369 -12.46057 -12.37067 -12.25527 -12.03239 -11.82525 -11.54001 -11.43696 -11.31776 -11.25956 -10.87590 -10.48298 -10.32403 -10.22830 -9.84427 -9.34213 -8.42183 -7.84503 -5.42596 -0.91968 -0.21993 0.64846 1.43104 1.47282 1.54932 1.62135 2.00746 2.15087 2.48018 3.08140 3.16022 3.29198 3.41337 3.47059 3.54353 3.72653 3.79005 3.83964 4.04864 4.15154 4.18314 4.24216 4.34161 4.40980 4.45277 4.47795 4.56503 4.61119 4.76158 4.76778 4.77440 4.89460 4.96584 5.01853 5.09125 5.09400 5.16664 5.22574 5.30069 5.38354 5.42652 5.48698 5.56184 5.57021 5.70440 5.77280 5.88134 6.43647 6.49146 6.83317 7.09754 7.17035 7.87720 8.37713 9.12857 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015185 B = 0.002255 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.445852 B =12411.294386 C =12794.611700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.035 4.035 3 Si 0.953 3.047 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.258 4.258 8 H 0.062 0.938 9 N -0.569 5.569 10 C 0.150 3.850 11 C -0.122 4.122 12 C 0.134 3.866 13 N -0.705 5.705 14 C 0.554 3.446 15 O -0.572 6.572 16 C -0.138 4.138 17 C -0.059 4.059 18 C -0.103 4.103 19 C -0.070 4.070 20 C 0.095 3.905 21 N -0.495 5.495 22 C 0.128 3.872 23 C -0.172 4.172 24 C -0.090 4.090 25 C -0.087 4.087 26 C 0.104 3.896 27 C -0.180 4.180 28 C -0.224 4.224 29 H 0.251 0.749 30 H 0.029 0.971 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.414 0.586 37 H 0.161 0.839 38 H 0.178 0.822 39 H 0.159 0.841 40 H 0.195 0.805 41 H 0.164 0.836 42 H 0.159 0.841 43 H 0.115 0.885 44 H 0.074 0.926 45 H 0.112 0.888 46 H 0.100 0.900 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.044 -9.080 20.427 22.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.232 4.232 3 Si 0.781 3.219 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.192 1.192 7 C -0.389 4.389 8 H 0.079 0.921 9 N -0.286 5.286 10 C 0.024 3.976 11 C -0.163 4.163 12 C 0.009 3.991 13 N -0.356 5.356 14 C 0.343 3.657 15 O -0.454 6.454 16 C -0.142 4.142 17 C -0.078 4.078 18 C -0.122 4.122 19 C -0.088 4.088 20 C -0.026 4.026 21 N -0.203 5.203 22 C -0.044 4.044 23 C -0.191 4.191 24 C -0.116 4.116 25 C -0.090 4.090 26 C -0.004 4.004 27 C -0.218 4.218 28 C -0.265 4.265 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.252 0.748 37 H 0.179 0.821 38 H 0.196 0.804 39 H 0.176 0.824 40 H 0.212 0.788 41 H 0.182 0.818 42 H 0.176 0.824 43 H 0.132 0.868 44 H 0.092 0.908 45 H 0.130 0.870 46 H 0.118 0.882 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.678 -8.959 21.190 23.476 hybrid contribution -0.335 1.390 -1.398 2.000 sum 4.343 -7.569 19.791 21.630 Atomic orbital electron populations 1.70013 1.06801 1.26213 1.53290 1.25840 0.95668 1.01373 1.00349 0.85504 0.78590 0.80228 0.77571 1.21355 1.22138 1.19151 1.19168 0.94200 0.85782 1.39733 0.92087 1.43597 1.49483 1.02461 1.33064 1.20739 0.90684 1.01370 0.84847 1.22107 0.98170 1.01970 0.94011 1.21186 0.95199 1.00691 0.81982 1.45886 1.12501 1.71816 1.05389 1.18492 0.86688 0.76242 0.84317 1.90552 1.15940 1.51846 1.87094 1.19841 0.95636 1.07326 0.91364 1.21876 0.91602 0.93270 1.01064 1.21264 1.02351 0.98300 0.90300 1.21358 0.91156 0.95817 1.00483 1.19221 0.95773 0.99796 0.87815 1.68103 1.11525 1.13973 1.26736 1.23600 0.89113 0.91436 1.00234 1.22376 1.03218 1.00953 0.92558 1.22643 0.94243 0.93608 1.01082 1.18859 0.95327 1.01255 0.93542 1.21548 1.01472 0.90025 0.87403 1.23034 0.91650 1.02293 1.04867 1.23280 0.98008 1.00767 1.04433 0.93933 0.95204 0.91569 0.92627 0.90858 0.91698 0.93464 0.74793 0.82121 0.80436 0.82354 0.78818 0.81833 0.82419 0.86763 0.90750 0.87017 0.88201 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.51 11.36 21.65 0.25 -52.27 16 2 C -0.04 -1.88 4.98 84.86 0.42 -1.46 16 3 Si 0.95 43.43 29.61 68.60 2.03 45.46 16 4 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.26 -13.36 8.58 84.03 0.72 -12.63 16 8 H 0.06 3.15 6.61 -2.91 -0.02 3.13 16 9 N -0.57 -26.51 2.77 -678.05 -1.88 -28.39 16 10 C 0.15 6.55 5.33 86.38 0.46 7.01 16 11 C -0.12 -4.13 5.65 30.59 0.17 -3.96 16 12 C 0.13 4.20 5.67 86.38 0.49 4.69 16 13 N -0.70 -18.12 5.51 -466.26 -2.57 -20.69 16 14 C 0.55 16.08 7.73 86.70 0.67 16.75 16 15 O -0.57 -20.48 13.41 -3.98 -0.05 -20.53 16 16 C -0.14 -3.34 5.90 -19.88 -0.12 -3.45 16 17 C -0.06 -0.96 9.51 22.55 0.21 -0.74 16 18 C -0.10 -1.30 9.92 21.97 0.22 -1.08 16 19 C -0.07 -1.16 9.96 22.40 0.22 -0.94 16 20 C 0.09 2.21 6.60 40.27 0.27 2.47 16 21 N -0.49 -11.17 10.34 -188.68 -1.95 -13.12 16 22 C 0.13 2.32 11.15 85.07 0.95 3.27 16 23 C -0.17 -3.36 10.03 22.17 0.22 -3.13 16 24 C -0.09 -2.38 9.29 22.45 0.21 -2.17 16 25 C -0.09 -2.28 5.76 -21.10 -0.12 -2.40 16 26 C 0.10 4.08 6.56 44.99 0.30 4.38 16 27 C -0.18 -6.51 9.80 30.62 0.30 -6.21 16 28 C -0.22 -8.69 10.36 30.62 0.32 -8.37 16 29 H 0.25 14.05 8.32 -92.71 -0.77 13.28 16 30 H 0.03 1.25 8.07 -2.39 -0.02 1.23 16 31 H 0.07 3.43 5.42 -2.38 -0.01 3.42 16 32 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.41 7.89 6.54 -92.71 -0.61 7.28 16 37 H 0.16 1.62 6.43 -2.91 -0.02 1.60 16 38 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 39 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 40 H 0.20 1.89 8.06 -2.91 -0.02 1.87 16 41 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 42 H 0.16 4.79 4.97 -3.14 -0.02 4.77 16 43 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 44 H 0.07 3.03 6.40 -2.39 -0.02 3.02 16 45 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 46 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 47 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -70.88 387.24 2.13 -68.75 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.39 Total: 28.77 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 5.91 Total: -7.98 kcal Atomic # 7 Polarization: -108.31 SS G_CDS: -6.15 Total: -114.46 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.05 Total: -20.53 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -70.88 2.13 -68.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713041916.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.133 kcal (2) G-P(sol) polarization free energy of solvation -70.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds