Wall clock time and date at job start Tue Mar 31 2020 22:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00297 * 2 1 4 4 H 1.48491 * 109.47473 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47099 * 300.00549 * 3 2 1 6 6 H 1.48498 * 109.47119 * 59.99624 * 3 2 1 7 7 C 1.38817 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00292 * 157.93247 * 7 2 1 9 9 N 1.36943 * 119.99408 * 337.93451 * 7 2 1 10 10 C 1.46496 * 120.00274 * 324.92321 * 9 7 2 11 11 C 1.52997 * 109.47499 * 270.00442 * 10 9 7 12 12 C 1.52998 * 109.47232 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.47170 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00070 * 179.97438 * 13 12 11 15 15 O 1.21561 * 120.00304 * 359.97438 * 14 13 12 16 16 C 1.47780 * 120.00317 * 179.97438 * 14 13 12 17 17 C 1.40651 * 119.69192 * 0.02562 * 16 14 13 18 18 C 1.35850 * 120.87486 * 179.97438 * 17 16 14 19 19 C 1.40398 * 119.83993 * 359.97438 * 18 17 16 20 20 C 1.40634 * 121.97083 * 180.02562 * 19 18 17 21 21 C 1.36218 * 118.73277 * 179.97438 * 20 19 18 22 22 N 1.32593 * 121.89818 * 359.97438 * 21 20 19 23 23 C 1.31240 * 122.74514 * 0.02562 * 22 21 20 24 24 C 1.40546 * 119.88549 * 359.97438 * 23 22 21 25 25 C 1.38559 * 119.70068 * 179.72696 * 16 14 13 26 26 C 1.46504 * 119.99489 * 144.93086 * 9 7 2 27 27 C 1.53000 * 117.49921 * 3.23472 * 26 9 7 28 28 C 1.52998 * 117.49703 * 294.57074 * 26 9 7 29 29 H 0.96995 * 119.99672 * 355.90991 * 1 2 3 30 30 H 1.09005 * 109.47045 * 30.00589 * 10 9 7 31 31 H 1.08998 * 109.47092 * 149.99943 * 10 9 7 32 32 H 1.09005 * 109.47091 * 300.00118 * 11 10 9 33 33 H 1.09004 * 109.46959 * 59.99639 * 11 10 9 34 34 H 1.09005 * 109.47181 * 300.00066 * 12 11 10 35 35 H 1.08992 * 109.47145 * 60.00006 * 12 11 10 36 36 H 0.96999 * 119.99950 * 359.97438 * 13 12 11 37 37 H 1.07999 * 119.57053 * 359.97438 * 17 16 14 38 38 H 1.07997 * 120.08370 * 179.97438 * 18 17 16 39 39 H 1.08001 * 120.63407 * 0.02562 * 20 19 18 40 40 H 1.08003 * 119.05215 * 180.02562 * 21 20 19 41 41 H 1.07996 * 120.05828 * 180.02562 * 23 22 21 42 42 H 1.08001 * 120.34687 * 0.02562 * 25 16 14 43 43 H 1.09004 * 115.54877 * 148.90350 * 26 9 7 44 44 H 1.08998 * 117.50153 * 359.97438 * 27 26 9 45 45 H 1.08995 * 117.49708 * 145.02504 * 27 26 9 46 46 H 1.08995 * 117.49988 * 214.98174 * 28 26 9 47 47 H 1.08997 * 117.49880 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0309 -1.2363 -0.3519 9 7 1.4007 -2.3448 0.4445 10 6 0.4457 -2.2813 1.5535 11 6 1.1887 -2.4675 2.8779 12 6 0.1913 -2.4005 4.0361 13 7 0.9029 -2.5781 5.3043 14 6 0.2228 -2.5551 6.4676 15 8 -0.9811 -2.3864 6.4647 16 6 0.9405 -2.7348 7.7469 17 6 2.3335 -2.9290 7.7429 18 6 3.0174 -3.0962 8.9047 19 6 2.3304 -3.0754 10.1289 20 6 2.9934 -3.2432 11.3578 21 6 2.2617 -3.2110 12.5064 22 7 0.9488 -3.0261 12.4957 23 6 0.2639 -2.8626 11.3882 24 6 0.9241 -2.8791 10.1476 25 6 0.2359 -2.7044 8.9395 26 6 1.7039 -3.6309 -0.1884 27 6 2.7655 -3.6431 -1.2902 28 6 1.2873 -3.8149 -1.6490 29 1 -0.4849 0.8379 0.0599 30 1 -0.0520 -1.3115 1.5493 31 1 -0.2968 -3.0711 1.4393 32 1 1.6864 -3.4373 2.8821 33 1 1.9312 -1.6776 2.9921 34 1 -0.3060 -1.4305 4.0317 35 1 -0.5514 -3.1900 3.9221 36 1 1.8636 -2.7123 5.3067 37 1 2.8667 -2.9454 6.8038 38 1 4.0870 -3.2447 8.8867 39 1 4.0623 -3.3940 11.3903 40 1 2.7657 -3.3389 13.4530 41 1 -0.8051 -2.7147 11.4302 42 1 -0.8331 -2.5506 8.9380 43 1 1.6465 -4.5015 0.4649 44 1 3.2380 -2.6944 -1.5444 45 1 3.4061 -4.5220 -1.3619 46 1 0.9562 -4.8067 -1.9568 47 1 0.7872 -2.9795 -2.1389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713047648.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:49 Heat of formation + Delta-G solvation = 62.531030 kcal Electronic energy + Delta-G solvation = -27533.024678 eV Core-core repulsion = 23681.968456 eV Total energy + Delta-G solvation = -3851.056222 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.24958 -39.69105 -37.36021 -37.11303 -35.39491 -33.66119 -33.36259 -32.10834 -31.24360 -30.13855 -29.33919 -25.92911 -24.70242 -24.30016 -23.37320 -22.54260 -21.47574 -21.10418 -20.89171 -19.70417 -18.37690 -18.10353 -17.10157 -16.43064 -16.05615 -15.71825 -15.53786 -15.38087 -15.24286 -14.69568 -14.58766 -14.31003 -14.06609 -13.97616 -13.90441 -13.56232 -13.44022 -12.69190 -12.38611 -12.31586 -12.18949 -11.95954 -11.65629 -11.54370 -11.06498 -10.86804 -10.77025 -10.71252 -10.59915 -10.24642 -10.17920 -10.00307 -9.81314 -9.68053 -9.60331 -9.53285 -9.29884 -8.95609 -8.51644 -8.47501 -6.62616 -5.83722 -3.44639 -0.14842 0.32801 1.43093 2.27150 3.14564 3.18267 3.30112 3.39853 3.41180 3.72728 3.99684 4.12358 4.26935 4.36030 4.39841 4.54092 4.62750 4.75298 4.82017 4.89344 5.12307 5.18237 5.27937 5.28512 5.37677 5.48892 5.55949 5.59927 5.70864 5.87514 5.88725 5.93392 5.96025 6.08465 6.19480 6.23412 6.29396 6.32794 6.34445 6.46080 6.61028 6.63586 6.70519 6.99973 7.05724 7.19412 7.52366 7.55273 7.62464 7.75604 8.18627 8.42085 9.09871 9.73029 10.28580 11.11895 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016300 B = 0.002033 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.368198 B =13770.160819 C =14141.803669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.010 3.990 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.258 4.258 8 H 0.066 0.934 9 N -0.551 5.551 10 C 0.149 3.851 11 C -0.146 4.146 12 C 0.120 3.880 13 N -0.718 5.718 14 C 0.551 3.449 15 O -0.538 6.538 16 C -0.132 4.132 17 C -0.070 4.070 18 C -0.118 4.118 19 C -0.009 4.009 20 C -0.160 4.160 21 C 0.082 3.918 22 N -0.493 5.493 23 C 0.159 3.841 24 C -0.124 4.124 25 C -0.018 4.018 26 C 0.120 3.880 27 C -0.197 4.197 28 C -0.222 4.222 29 H 0.255 0.745 30 H 0.103 0.897 31 H 0.028 0.972 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.398 0.602 37 H 0.133 0.867 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.154 0.846 41 H 0.168 0.832 42 H 0.150 0.850 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.820 -7.926 20.280 22.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.190 4.190 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.387 4.387 8 H 0.084 0.916 9 N -0.268 5.268 10 C 0.022 3.978 11 C -0.186 4.186 12 C -0.003 4.003 13 N -0.369 5.369 14 C 0.338 3.662 15 O -0.416 6.416 16 C -0.135 4.135 17 C -0.090 4.090 18 C -0.136 4.136 19 C -0.015 4.015 20 C -0.180 4.180 21 C -0.060 4.060 22 N -0.201 5.201 23 C -0.013 4.013 24 C -0.126 4.126 25 C -0.038 4.038 26 C 0.011 3.989 27 C -0.235 4.235 28 C -0.263 4.263 29 H 0.065 0.935 30 H 0.120 0.880 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.233 0.767 37 H 0.151 0.849 38 H 0.155 0.845 39 H 0.158 0.842 40 H 0.171 0.829 41 H 0.185 0.815 42 H 0.167 0.833 43 H 0.104 0.896 44 H 0.115 0.885 45 H 0.092 0.908 46 H 0.088 0.912 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.531 -7.647 21.068 22.866 hybrid contribution 1.504 0.781 -0.974 1.955 sum 6.035 -6.866 20.093 22.075 Atomic orbital electron populations 1.70046 1.05481 1.26018 1.50839 1.25136 0.94986 0.98752 1.00152 0.86368 0.79751 0.84090 0.77442 1.20081 1.21621 1.21352 1.19102 0.94405 0.85458 1.39770 0.91600 1.43411 1.49115 1.01404 1.32851 1.20857 0.90464 1.03390 0.83089 1.22454 0.98854 1.01283 0.96003 1.21517 0.95587 1.02037 0.81141 1.46105 1.11661 1.72723 1.06409 1.18193 0.87048 0.77300 0.83697 1.90787 1.13980 1.49411 1.87425 1.20063 0.93963 1.05426 0.94046 1.21101 0.92991 0.95833 0.99050 1.20872 1.00311 1.01481 0.90894 1.18308 0.92656 0.96062 0.94429 1.21941 1.01393 1.02323 0.92313 1.22268 0.89624 0.95708 0.98434 1.67489 1.09160 1.12255 1.31154 1.23347 1.00214 0.91497 0.86213 1.19020 0.93846 1.04280 0.95448 1.21472 1.00764 0.91952 0.89659 1.21227 1.00350 0.90233 0.87078 1.23035 0.91935 1.01808 1.06722 1.23367 0.97339 1.00653 1.04976 0.93510 0.87954 0.95306 0.93141 0.91514 0.91164 0.91651 0.76673 0.84913 0.84452 0.84226 0.82863 0.81519 0.83271 0.89623 0.88508 0.90815 0.91248 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.36 11.33 55.49 0.63 -23.73 16 2 C 0.01 0.27 4.96 -17.43 -0.09 0.18 16 3 Si 0.89 20.79 29.61 -169.99 -5.03 15.75 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.26 -6.62 8.63 -15.05 -0.13 -6.75 16 8 H 0.07 1.71 6.55 -52.49 -0.34 1.36 16 9 N -0.55 -12.88 2.78 -165.66 -0.46 -13.35 16 10 C 0.15 3.21 5.34 -4.05 -0.02 3.19 16 11 C -0.15 -2.52 5.65 -26.73 -0.15 -2.67 16 12 C 0.12 1.90 5.67 -4.04 -0.02 1.88 16 13 N -0.72 -9.48 5.50 -61.27 -0.34 -9.82 16 14 C 0.55 7.78 7.76 -12.36 -0.10 7.69 16 15 O -0.54 -9.48 16.30 5.31 0.09 -9.39 16 16 C -0.13 -1.47 5.87 -104.97 -0.62 -2.09 16 17 C -0.07 -0.62 9.44 -39.53 -0.37 -0.99 16 18 C -0.12 -0.93 9.77 -39.63 -0.39 -1.31 16 19 C -0.01 -0.08 5.75 -106.74 -0.61 -0.70 16 20 C -0.16 -1.17 9.87 -39.40 -0.39 -1.56 16 21 C 0.08 0.65 11.07 -17.95 -0.20 0.45 16 22 N -0.49 -4.79 10.30 -13.12 -0.14 -4.92 16 23 C 0.16 1.41 11.05 -16.93 -0.19 1.22 16 24 C -0.12 -1.19 5.74 -106.87 -0.61 -1.80 16 25 C -0.02 -0.18 9.37 -38.75 -0.36 -0.55 16 26 C 0.12 2.47 6.56 -67.93 -0.45 2.03 16 27 C -0.20 -3.77 9.80 -26.69 -0.26 -4.03 16 28 C -0.22 -4.45 10.36 -26.69 -0.28 -4.72 16 29 H 0.25 6.82 8.32 -40.82 -0.34 6.49 16 30 H 0.10 2.55 5.36 -51.93 -0.28 2.27 16 31 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.40 4.18 6.45 -40.82 -0.26 3.92 16 37 H 0.13 0.90 6.34 -52.49 -0.33 0.57 16 38 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 40 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 41 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.15 1.46 7.61 -52.49 -0.40 1.06 16 43 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 44 H 0.10 2.02 6.37 -51.93 -0.33 1.69 16 45 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.09 2.11 8.14 -51.93 -0.42 1.68 16 LS Contribution 392.23 15.07 5.91 5.91 Total: -1.00 -31.52 392.23 -11.15 -42.67 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -6.58 Total: 7.41 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -5.23 Total: -10.53 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.30 Total: -51.82 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.52 -11.15 -42.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713047648.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.199 kcal (2) G-P(sol) polarization free energy of solvation -31.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds