Wall clock time and date at job start Tue Mar 31 2020 22:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00297 * 2 1 4 4 H 1.48491 * 109.47473 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47099 * 300.00549 * 3 2 1 6 6 H 1.48498 * 109.47119 * 59.99624 * 3 2 1 7 7 C 1.38817 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00292 * 157.93247 * 7 2 1 9 9 N 1.36943 * 119.99408 * 337.93451 * 7 2 1 10 10 C 1.46496 * 120.00274 * 324.92321 * 9 7 2 11 11 C 1.52997 * 109.47499 * 270.00442 * 10 9 7 12 12 C 1.52998 * 109.47232 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.47170 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00070 * 179.97438 * 13 12 11 15 15 O 1.21561 * 120.00304 * 359.97438 * 14 13 12 16 16 C 1.47780 * 120.00317 * 179.97438 * 14 13 12 17 17 C 1.40651 * 119.69192 * 0.02562 * 16 14 13 18 18 C 1.35850 * 120.87486 * 179.97438 * 17 16 14 19 19 C 1.40398 * 119.83993 * 359.97438 * 18 17 16 20 20 C 1.40634 * 121.97083 * 180.02562 * 19 18 17 21 21 C 1.36218 * 118.73277 * 179.97438 * 20 19 18 22 22 N 1.32593 * 121.89818 * 359.97438 * 21 20 19 23 23 C 1.31240 * 122.74514 * 0.02562 * 22 21 20 24 24 C 1.40546 * 119.88549 * 359.97438 * 23 22 21 25 25 C 1.38559 * 119.70068 * 179.72696 * 16 14 13 26 26 C 1.46504 * 119.99489 * 144.93086 * 9 7 2 27 27 C 1.53000 * 117.49921 * 3.23472 * 26 9 7 28 28 C 1.52998 * 117.49703 * 294.57074 * 26 9 7 29 29 H 0.96995 * 119.99672 * 355.90991 * 1 2 3 30 30 H 1.09005 * 109.47045 * 30.00589 * 10 9 7 31 31 H 1.08998 * 109.47092 * 149.99943 * 10 9 7 32 32 H 1.09005 * 109.47091 * 300.00118 * 11 10 9 33 33 H 1.09004 * 109.46959 * 59.99639 * 11 10 9 34 34 H 1.09005 * 109.47181 * 300.00066 * 12 11 10 35 35 H 1.08992 * 109.47145 * 60.00006 * 12 11 10 36 36 H 0.96999 * 119.99950 * 359.97438 * 13 12 11 37 37 H 1.07999 * 119.57053 * 359.97438 * 17 16 14 38 38 H 1.07997 * 120.08370 * 179.97438 * 18 17 16 39 39 H 1.08001 * 120.63407 * 0.02562 * 20 19 18 40 40 H 1.08003 * 119.05215 * 180.02562 * 21 20 19 41 41 H 1.07996 * 120.05828 * 180.02562 * 23 22 21 42 42 H 1.08001 * 120.34687 * 0.02562 * 25 16 14 43 43 H 1.09004 * 115.54877 * 148.90350 * 26 9 7 44 44 H 1.08998 * 117.50153 * 359.97438 * 27 26 9 45 45 H 1.08995 * 117.49708 * 145.02504 * 27 26 9 46 46 H 1.08995 * 117.49988 * 214.98174 * 28 26 9 47 47 H 1.08997 * 117.49880 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0309 -1.2363 -0.3519 9 7 1.4007 -2.3448 0.4445 10 6 0.4457 -2.2813 1.5535 11 6 1.1887 -2.4675 2.8779 12 6 0.1913 -2.4005 4.0361 13 7 0.9029 -2.5781 5.3043 14 6 0.2228 -2.5551 6.4676 15 8 -0.9811 -2.3864 6.4647 16 6 0.9405 -2.7348 7.7469 17 6 2.3335 -2.9290 7.7429 18 6 3.0174 -3.0962 8.9047 19 6 2.3304 -3.0754 10.1289 20 6 2.9934 -3.2432 11.3578 21 6 2.2617 -3.2110 12.5064 22 7 0.9488 -3.0261 12.4957 23 6 0.2639 -2.8626 11.3882 24 6 0.9241 -2.8791 10.1476 25 6 0.2359 -2.7044 8.9395 26 6 1.7039 -3.6309 -0.1884 27 6 2.7655 -3.6431 -1.2902 28 6 1.2873 -3.8149 -1.6490 29 1 -0.4849 0.8379 0.0599 30 1 -0.0520 -1.3115 1.5493 31 1 -0.2968 -3.0711 1.4393 32 1 1.6864 -3.4373 2.8821 33 1 1.9312 -1.6776 2.9921 34 1 -0.3060 -1.4305 4.0317 35 1 -0.5514 -3.1900 3.9221 36 1 1.8636 -2.7123 5.3067 37 1 2.8667 -2.9454 6.8038 38 1 4.0870 -3.2447 8.8867 39 1 4.0623 -3.3940 11.3903 40 1 2.7657 -3.3389 13.4530 41 1 -0.8051 -2.7147 11.4302 42 1 -0.8331 -2.5506 8.9380 43 1 1.6465 -4.5015 0.4649 44 1 3.2380 -2.6944 -1.5444 45 1 3.4061 -4.5220 -1.3619 46 1 0.9562 -4.8067 -1.9568 47 1 0.7872 -2.9795 -2.1389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713047648.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:48 Heat of formation + Delta-G solvation = 44.947715 kcal Electronic energy + Delta-G solvation = -27533.787148 eV Core-core repulsion = 23681.968456 eV Total energy + Delta-G solvation = -3851.818692 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.94816 -40.72797 -38.86375 -38.03229 -36.73455 -35.29958 -34.02067 -33.49269 -32.37831 -31.08365 -30.62164 -27.40568 -25.99690 -24.97859 -24.68779 -23.27203 -23.01998 -22.49343 -22.01010 -21.42200 -19.32993 -18.76261 -18.29379 -17.78101 -17.30313 -16.89275 -16.72331 -16.60770 -16.32970 -16.00028 -15.77301 -15.33615 -15.10134 -14.94646 -14.82983 -14.54412 -14.38853 -14.23712 -13.88960 -13.66366 -13.27912 -13.05069 -12.88614 -12.77014 -12.60516 -12.44847 -12.33972 -12.26804 -11.99144 -11.82541 -11.44316 -11.28992 -11.25484 -11.17249 -10.87509 -10.52403 -10.46501 -10.31641 -10.08997 -9.12635 -8.52823 -7.78572 -5.43816 -0.83396 -0.35051 0.75529 1.43162 1.47891 1.47932 1.56401 2.05857 2.30048 2.49953 3.03972 3.15757 3.42183 3.43603 3.48026 3.52202 3.60982 3.65460 3.85587 3.98838 4.04239 4.18657 4.21043 4.33561 4.34503 4.47275 4.55980 4.60851 4.63600 4.66649 4.77290 4.77835 4.86100 4.92199 4.95477 4.96554 5.09026 5.12966 5.17342 5.29522 5.37407 5.38148 5.48456 5.56145 5.59799 5.69884 5.70347 5.87586 6.46207 6.46951 6.93865 7.11174 7.16401 7.87394 8.36473 9.11924 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016300 B = 0.002033 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.368198 B =13770.160819 C =14141.803669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.040 4.040 3 Si 0.950 3.050 4 H -0.265 1.265 5 H -0.297 1.297 6 H -0.290 1.290 7 C -0.253 4.253 8 H 0.063 0.937 9 N -0.568 5.568 10 C 0.147 3.853 11 C -0.122 4.122 12 C 0.133 3.867 13 N -0.707 5.707 14 C 0.550 3.450 15 O -0.582 6.582 16 C -0.146 4.146 17 C -0.076 4.076 18 C -0.107 4.107 19 C -0.023 4.023 20 C -0.153 4.153 21 C 0.071 3.929 22 N -0.514 5.514 23 C 0.149 3.851 24 C -0.136 4.136 25 C -0.023 4.023 26 C 0.102 3.898 27 C -0.180 4.180 28 C -0.224 4.224 29 H 0.249 0.751 30 H 0.068 0.932 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.414 0.586 37 H 0.154 0.846 38 H 0.172 0.828 39 H 0.173 0.827 40 H 0.179 0.821 41 H 0.182 0.818 42 H 0.144 0.856 43 H 0.116 0.884 44 H 0.074 0.926 45 H 0.112 0.888 46 H 0.100 0.900 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.928 -9.608 21.733 25.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.237 4.237 3 Si 0.778 3.222 4 H -0.189 1.189 5 H -0.225 1.225 6 H -0.216 1.216 7 C -0.384 4.384 8 H 0.081 0.919 9 N -0.285 5.285 10 C 0.021 3.979 11 C -0.162 4.162 12 C 0.008 3.992 13 N -0.359 5.359 14 C 0.339 3.661 15 O -0.463 6.463 16 C -0.149 4.149 17 C -0.096 4.096 18 C -0.124 4.124 19 C -0.029 4.029 20 C -0.172 4.172 21 C -0.071 4.071 22 N -0.222 5.222 23 C -0.022 4.022 24 C -0.138 4.138 25 C -0.044 4.044 26 C -0.006 4.006 27 C -0.218 4.218 28 C -0.265 4.265 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.048 0.952 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.252 0.748 37 H 0.171 0.829 38 H 0.189 0.811 39 H 0.191 0.809 40 H 0.196 0.804 41 H 0.199 0.801 42 H 0.162 0.838 43 H 0.133 0.867 44 H 0.093 0.907 45 H 0.130 0.870 46 H 0.118 0.882 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.690 -9.353 22.524 25.573 hybrid contribution 0.555 1.222 -1.374 1.921 sum 8.245 -8.130 21.151 24.113 Atomic orbital electron populations 1.70178 1.06729 1.26100 1.52878 1.25764 0.95542 1.01369 1.00996 0.85489 0.79211 0.80791 0.76665 1.18884 1.22460 1.21645 1.19271 0.94257 0.86479 1.38354 0.91911 1.43616 1.49147 1.01945 1.33785 1.20763 0.90749 1.01534 0.84897 1.22088 0.98100 1.01978 0.93993 1.21174 0.95253 1.00725 0.82004 1.45884 1.12361 1.72347 1.05319 1.18667 0.86646 0.76116 0.84686 1.90760 1.15997 1.51490 1.88087 1.19897 0.95148 1.07535 0.92370 1.21276 0.91779 0.95961 1.00560 1.21228 1.01784 0.99603 0.89818 1.18677 0.92483 0.95911 0.95791 1.22282 1.02925 1.00806 0.91191 1.22777 0.89200 0.95164 0.99988 1.67525 1.10397 1.12829 1.31488 1.23618 1.01108 0.91485 0.85973 1.19111 0.94659 1.04888 0.95170 1.21496 1.00738 0.92088 0.90080 1.21573 1.01436 0.89868 0.87696 1.23042 0.91627 1.02311 1.04853 1.23289 0.98117 1.00782 1.04315 0.94152 0.91462 0.95175 0.90883 0.92573 0.93592 0.91819 0.74815 0.82884 0.81102 0.80937 0.80378 0.80073 0.83840 0.86681 0.90748 0.86972 0.88150 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.38 11.33 21.65 0.25 -52.13 16 2 C -0.04 -2.12 4.96 84.86 0.42 -1.70 16 3 Si 0.95 43.49 29.61 68.60 2.03 45.52 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 5 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 7 C -0.25 -13.08 8.63 84.03 0.73 -12.36 16 8 H 0.06 3.24 6.55 -2.91 -0.02 3.22 16 9 N -0.57 -26.42 2.78 -678.03 -1.88 -28.30 16 10 C 0.15 6.42 5.34 86.38 0.46 6.88 16 11 C -0.12 -4.11 5.65 30.59 0.17 -3.94 16 12 C 0.13 4.22 5.67 86.38 0.49 4.71 16 13 N -0.71 -18.21 5.50 -466.05 -2.57 -20.78 16 14 C 0.55 15.67 7.76 86.77 0.67 16.34 16 15 O -0.58 -21.35 16.30 -3.91 -0.06 -21.42 16 16 C -0.15 -3.20 5.87 -20.09 -0.12 -3.31 16 17 C -0.08 -1.17 9.44 22.30 0.21 -0.96 16 18 C -0.11 -1.33 9.77 22.24 0.22 -1.11 16 19 C -0.02 -0.36 5.75 -21.23 -0.12 -0.48 16 20 C -0.15 -1.75 9.87 22.38 0.22 -1.53 16 21 C 0.07 0.96 11.07 84.11 0.93 1.89 16 22 N -0.51 -9.39 10.30 -195.41 -2.01 -11.40 16 23 C 0.15 2.58 11.05 85.34 0.94 3.52 16 24 C -0.14 -2.52 5.74 -21.32 -0.12 -2.64 16 25 C -0.02 -0.48 9.37 22.81 0.21 -0.27 16 26 C 0.10 4.02 6.56 44.99 0.30 4.32 16 27 C -0.18 -6.48 9.80 30.62 0.30 -6.18 16 28 C -0.22 -8.67 10.36 30.62 0.32 -8.36 16 29 H 0.25 13.92 8.32 -92.71 -0.77 13.15 16 30 H 0.07 3.49 5.36 -2.38 -0.01 3.47 16 31 H 0.03 1.27 8.07 -2.39 -0.02 1.25 16 32 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 33 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.41 7.91 6.45 -92.71 -0.60 7.31 16 37 H 0.15 1.60 6.34 -2.91 -0.02 1.58 16 38 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 39 H 0.17 0.76 8.06 -2.91 -0.02 0.73 16 40 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 41 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 42 H 0.14 3.02 7.61 -2.91 -0.02 3.00 16 43 H 0.12 3.83 8.14 -2.38 -0.02 3.81 16 44 H 0.07 3.03 6.37 -2.39 -0.02 3.01 16 45 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 46 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 47 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -70.91 392.23 2.38 -68.54 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.40 Total: 25.16 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 6.23 Total: -5.18 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -6.22 Total: -112.61 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.06 Total: -21.42 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -70.91 2.38 -68.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713047648.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.484 kcal (2) G-P(sol) polarization free energy of solvation -70.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds