Wall clock time and date at job start Tue Mar 31 2020 22:57:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31415 * 1
3 3 Si 1.86803 * 119.99773 * 2 1
4 4 H 1.48506 * 109.46727 * 270.00257 * 3 2 1
5 5 H 1.48500 * 109.46903 * 29.99442 * 3 2 1
6 6 H 1.48496 * 109.47225 * 149.99955 * 3 2 1
7 7 C 1.38946 * 120.00008 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00236 * 359.97438 * 7 2 1
9 9 N 1.37101 * 119.99985 * 180.02562 * 7 2 1
10 10 C 1.34775 * 120.00255 * 179.97438 * 9 7 2
11 11 O 1.21297 * 119.99718 * 0.02562 * 10 9 7
12 12 C 1.50693 * 120.00075 * 179.97438 * 10 9 7
13 13 N 1.46897 * 109.47274 * 180.02562 * 12 10 9
14 14 C 1.46906 * 111.00285 * 179.97438 * 13 12 10
15 15 C 1.52995 * 109.47021 * 180.02562 * 14 13 12
16 16 H 1.08997 * 110.88863 * 51.12112 * 15 14 13
17 17 C 1.55163 * 111.03550 * 287.21557 * 15 14 13
18 18 C 1.54322 * 102.86241 * 206.21967 * 17 15 14
19 19 N 1.47025 * 107.27329 * 22.52622 * 18 17 15
20 20 C 1.34780 * 125.64322 * 180.97052 * 19 18 17
21 21 O 1.21282 * 119.99821 * 179.68892 * 20 19 18
22 22 C 1.50696 * 120.00176 * 359.69117 * 20 19 18
23 23 H 1.09006 * 110.60622 * 321.32698 * 22 20 19
24 24 C 1.54108 * 110.34148 * 84.22704 * 22 20 19
25 25 N 1.47049 * 103.86466 * 118.86941 * 24 22 20
26 26 C 1.33953 * 109.17955 * 359.60535 * 25 24 22
27 27 O 1.21586 * 123.04490 * 180.24458 * 26 25 24
28 28 N 1.33954 * 113.91376 * 0.26429 * 26 25 24
29 29 C 1.47425 * 108.70679 * 0.70428 * 19 18 17
30 30 H 0.96998 * 120.00262 * 0.02562 * 1 2 3
31 31 H 0.97001 * 119.99573 * 359.97438 * 9 7 2
32 32 H 1.08997 * 109.47414 * 60.00080 * 12 10 9
33 33 H 1.09003 * 109.47194 * 300.00574 * 12 10 9
34 34 H 1.00903 * 111.00112 * 56.05061 * 13 12 10
35 35 H 1.09003 * 109.46517 * 59.99856 * 14 13 12
36 36 H 1.09000 * 109.47313 * 300.00497 * 14 13 12
37 37 H 1.09003 * 110.72105 * 324.77261 * 17 15 14
38 38 H 1.08991 * 110.71947 * 87.87300 * 17 15 14
39 39 H 1.09001 * 109.98371 * 263.04889 * 18 17 15
40 40 H 1.08999 * 109.77369 * 141.88694 * 18 17 15
41 41 H 1.08996 * 110.65738 * 0.21732 * 24 22 20
42 42 H 1.09001 * 110.44046 * 237.41243 * 24 22 20
43 43 H 0.97001 * 125.41433 * 179.87691 * 25 24 22
44 44 H 0.96994 * 125.40890 * 179.97438 * 28 26 25
45 45 H 1.08995 * 110.36212 * 94.93560 * 29 19 18
46 46 H 1.08996 * 110.36655 * 217.26093 * 29 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2481 1.6178 0.0000
4 1 2.4955 2.0465 -1.4002
5 1 1.4454 2.6527 0.6999
6 1 3.5456 1.4403 0.7000
7 6 2.0089 -1.2033 -0.0005
8 1 1.4689 -2.1387 -0.0005
9 7 3.3799 -1.2033 0.0000
10 6 4.0538 -2.3705 0.0000
11 8 3.4473 -3.4209 -0.0009
12 6 5.5608 -2.3704 0.0000
13 7 6.0505 -3.7553 -0.0006
14 6 7.5190 -3.7945 -0.0013
15 6 7.9903 -5.2501 -0.0025
16 1 7.5016 -5.8161 -0.7955
17 6 7.7547 -5.9130 1.3804
18 6 8.8310 -7.0183 1.4194
19 7 9.8902 -6.6297 0.4767
20 6 11.0017 -7.3425 0.2068
21 8 11.8091 -6.9260 -0.5967
22 6 11.2414 -8.6572 0.9034
23 1 10.9256 -8.6025 1.9453
24 6 10.5057 -9.7947 0.1687
25 7 11.5858 -10.7006 -0.2495
26 6 12.7613 -10.1979 0.1503
27 8 13.8251 -10.7447 -0.0683
28 7 12.6588 -9.0383 0.8131
29 6 9.5320 -5.3343 -0.1292
30 1 -0.4850 0.8400 -0.0004
31 1 3.8648 -0.3632 0.0004
32 1 5.9241 -1.8566 0.8899
33 1 5.9241 -1.8565 -0.8900
34 1 5.6751 -4.2713 -0.7823
35 1 7.8962 -3.2908 0.8888
36 1 7.8956 -3.2902 -0.8912
37 1 7.9071 -5.1928 2.1843
38 1 6.7556 -6.3449 1.4357
39 1 8.3971 -7.9715 1.1172
40 1 9.2414 -7.0980 2.4260
41 1 9.9717 -9.4093 -0.6999
42 1 9.8198 -10.3040 0.8456
43 1 11.4665 -11.5285 -0.7406
44 1 13.4015 -8.5309 1.1761
45 1 10.0027 -4.5170 0.4171
46 1 9.8283 -5.3111 -1.1778
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001714361839.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:57:54
Heat of formation + Delta-G solvation = -69.800404 kcal
Electronic energy + Delta-G solvation = -28522.711187 eV
Core-core repulsion = 24255.067379 eV
Total energy + Delta-G solvation = -4267.643807 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 339.174 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-41.84259 -40.17418 -38.63424 -38.07048 -36.61646 -35.60461 -33.97969 -33.52357
-32.37938 -31.69147 -30.03094 -29.64538 -27.45279 -25.38212 -24.27540 -23.19668
-22.97177 -22.26486 -20.84094 -20.06197 -19.41624 -18.41521 -18.33212 -18.02930
-16.98774 -16.67625 -16.37749 -16.00637 -15.74344 -15.46218 -15.14498 -14.94740
-14.58307 -14.47182 -14.37954 -14.15232 -13.87119 -13.72566 -13.35506 -13.18777
-13.15357 -13.01771 -12.71950 -12.52060 -12.15427 -11.98792 -11.83375 -11.37426
-11.27150 -11.12608 -10.97704 -10.82316 -10.64934 -10.63775 -10.02298 -9.90043
-9.62191 -9.40698 -9.16383 -8.66457 -8.26916 -8.21257 -6.35767 -3.87521
1.88090 2.15103 2.42545 2.77185 2.98546 3.02769 3.11611 3.43123
3.64891 3.68063 3.73077 3.91515 4.05913 4.18978 4.20069 4.36660
4.58682 4.64351 4.75984 4.80448 4.86107 4.93673 5.01098 5.06644
5.16810 5.24441 5.28926 5.38224 5.48861 5.57323 5.60919 5.72972
5.73933 5.85958 5.88362 5.99371 6.48373 6.63093 6.84393 6.94180
6.97179 7.45529 7.53133 7.55658 8.09352 8.14582 8.54507 8.89969
9.37411 9.77014 10.77240
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.040634 B = 0.001580 C = 0.001546
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 688.915537 B =17720.237323 C =18109.539315
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.880 5.880
2 C 0.042 3.958
3 Si 0.880 3.120
4 H -0.271 1.271
5 H -0.276 1.276
6 H -0.269 1.269
7 C -0.306 4.306
8 H 0.120 0.880
9 N -0.590 5.590
10 C 0.449 3.551
11 O -0.566 6.566
12 C 0.048 3.952
13 N -0.666 5.666
14 C 0.069 3.931
15 C -0.097 4.097
16 H 0.088 0.912
17 C -0.116 4.116
18 C 0.091 3.909
19 N -0.613 5.613
20 C 0.516 3.484
21 O -0.522 6.522
22 C 0.108 3.892
23 H 0.117 0.883
24 C 0.106 3.894
25 N -0.738 5.738
26 C 0.706 3.294
27 O -0.582 6.582
28 N -0.716 5.716
29 C 0.111 3.889
30 H 0.274 0.726
31 H 0.370 0.630
32 H 0.087 0.913
33 H 0.045 0.955
34 H 0.351 0.649
35 H 0.075 0.925
36 H 0.032 0.968
37 H 0.081 0.919
38 H 0.094 0.906
39 H 0.073 0.927
40 H 0.072 0.928
41 H 0.087 0.913
42 H 0.098 0.902
43 H 0.434 0.566
44 H 0.434 0.566
45 H 0.073 0.927
46 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 21.213 -14.125 3.832 25.771
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.520 5.520
2 C -0.161 4.161
3 Si 0.706 3.294
4 H -0.197 1.197
5 H -0.201 1.201
6 H -0.195 1.195
7 C -0.435 4.435
8 H 0.137 0.863
9 N -0.229 5.229
10 C 0.235 3.765
11 O -0.448 6.448
12 C -0.085 4.085
13 N -0.299 5.299
14 C -0.061 4.061
15 C -0.117 4.117
16 H 0.106 0.894
17 C -0.153 4.153
18 C -0.032 4.032
19 N -0.348 5.348
20 C 0.302 3.698
21 O -0.397 6.397
22 C -0.003 4.003
23 H 0.135 0.865
24 C -0.020 4.020
25 N -0.402 5.402
26 C 0.405 3.595
27 O -0.460 6.460
28 N -0.378 5.378
29 C -0.012 4.012
30 H 0.084 0.916
31 H 0.203 0.797
32 H 0.105 0.895
33 H 0.063 0.937
34 H 0.170 0.830
35 H 0.094 0.906
36 H 0.050 0.950
37 H 0.099 0.901
38 H 0.113 0.887
39 H 0.091 0.909
40 H 0.090 0.910
41 H 0.105 0.895
42 H 0.116 0.884
43 H 0.276 0.724
44 H 0.277 0.723
45 H 0.091 0.909
46 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges 21.592 -14.892 3.959 26.526
hybrid contribution 0.743 1.826 -0.864 2.152
sum 22.334 -13.066 3.095 26.060
Atomic orbital electron populations
1.69619 1.05653 1.27548 1.49199 1.25042 0.95492 0.97992 0.97585
0.86671 0.79793 0.84039 0.78870 1.19661 1.20143 1.19478 1.19430
0.79238 0.96636 1.48206 0.86271 1.42212 1.07554 1.06186 1.66969
1.19691 0.88175 0.84566 0.84090 1.90563 1.69436 1.30922 1.53833
1.21699 0.95076 0.90352 1.01337 1.60049 1.05602 1.12798 1.51428
1.21873 0.88871 0.94475 1.00885 1.22344 0.93524 0.97068 0.98728
0.89377 1.22615 0.98730 0.96797 0.97207 1.22301 0.88458 0.99542
0.92881 1.48513 1.20914 1.22069 1.43304 1.20410 0.80760 0.85689
0.82981 1.90780 1.44358 1.70336 1.34255 1.21831 0.84119 0.92910
1.01444 0.86539 1.22227 0.90805 0.89054 0.99941 1.45053 1.05823
1.26898 1.62408 1.15852 0.84325 0.81116 0.78194 1.91017 1.28248
1.64096 1.62590 1.44845 1.07308 1.24268 1.61375 1.22282 0.94764
0.84800 0.99341 0.91575 0.79683 0.89459 0.93725 0.82963 0.90612
0.95033 0.90064 0.88738 0.90892 0.90952 0.89456 0.88379 0.72397
0.72304 0.90915 0.90230
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -25.16 13.96 55.50 0.77 -24.39 16
2 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16
3 Si 0.88 18.79 27.74 -169.99 -4.71 14.08 16
4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16
5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16
6 H -0.27 -5.21 6.52 56.52 0.37 -4.84 16
7 C -0.31 -8.42 10.16 -14.93 -0.15 -8.57 16
8 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16
9 N -0.59 -13.45 5.09 -10.96 -0.06 -13.51 16
10 C 0.45 9.58 7.82 -10.99 -0.09 9.49 16
11 O -0.57 -14.37 15.78 5.54 0.09 -14.28 16
12 C 0.05 0.71 6.17 -4.98 -0.03 0.68 16
13 N -0.67 -8.57 6.07 -115.06 -0.70 -9.27 16
14 C 0.07 0.61 5.14 -3.82 -0.02 0.59 16
15 C -0.10 -0.69 3.19 -88.47 -0.28 -0.97 16
16 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16
17 C -0.12 -0.70 6.37 -24.89 -0.16 -0.86 16
18 C 0.09 0.37 6.26 -3.06 -0.02 0.35 16
19 N -0.61 -4.01 3.33 -170.52 -0.57 -4.58 16
20 C 0.52 4.19 6.94 -10.99 -0.08 4.12 16
21 O -0.52 -6.65 16.85 5.56 0.09 -6.56 16
22 C 0.11 0.56 3.59 -68.20 -0.24 0.32 16
23 H 0.12 0.26 7.55 -51.93 -0.39 -0.13 16
24 C 0.11 0.41 7.69 -3.16 -0.02 0.39 16
25 N -0.74 -4.74 6.37 -64.70 -0.41 -5.16 16
26 C 0.71 7.22 8.92 -88.39 -0.79 6.43 16
27 O -0.58 -8.54 18.05 5.29 0.10 -8.45 16
28 N -0.72 -5.60 5.63 -59.32 -0.33 -5.93 16
29 C 0.11 0.80 6.38 -2.53 -0.02 0.79 16
30 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16
31 H 0.37 7.38 5.76 -40.82 -0.24 7.15 16
32 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16
33 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16
34 H 0.35 4.76 8.43 -39.29 -0.33 4.43 16
35 H 0.08 0.63 7.97 -51.93 -0.41 0.22 16
36 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16
37 H 0.08 0.52 7.92 -51.93 -0.41 0.11 16
38 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16
39 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16
40 H 0.07 0.19 7.95 -51.93 -0.41 -0.22 16
41 H 0.09 0.35 7.72 -51.93 -0.40 -0.05 16
42 H 0.10 0.09 8.14 -51.93 -0.42 -0.34 16
43 H 0.43 2.03 8.96 -40.82 -0.37 1.66 16
44 H 0.43 3.09 8.96 -40.82 -0.37 2.73 16
45 H 0.07 0.51 8.04 -51.93 -0.42 0.10 16
46 H 0.08 0.67 8.04 -51.93 -0.42 0.25 16
LS Contribution 383.70 15.07 5.78 5.78
Total: -1.00 -38.41 383.70 -8.62 -47.03
By element:
Atomic # 1 Polarization: 18.12 SS G_CDS: -6.68 Total: 11.44 kcal
Atomic # 6 Polarization: 15.77 SS G_CDS: -1.99 Total: 13.78 kcal
Atomic # 7 Polarization: -61.53 SS G_CDS: -1.29 Total: -62.83 kcal
Atomic # 8 Polarization: -29.56 SS G_CDS: 0.28 Total: -29.28 kcal
Atomic # 14 Polarization: 18.79 SS G_CDS: -4.71 Total: 14.08 kcal
Total LS contribution 5.78 Total: 5.78 kcal
Total: -38.41 -8.62 -47.03 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001714361839.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.767 kcal
(2) G-P(sol) polarization free energy of solvation -38.411 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.178 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.033 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.800 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds