Wall clock time and date at job start Tue Mar 31 2020 22:57:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31415 * 1
3 3 Si 1.86803 * 119.99773 * 2 1
4 4 H 1.48506 * 109.46727 * 270.00257 * 3 2 1
5 5 H 1.48500 * 109.46903 * 29.99442 * 3 2 1
6 6 H 1.48496 * 109.47225 * 149.99955 * 3 2 1
7 7 C 1.38946 * 120.00008 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00236 * 359.97438 * 7 2 1
9 9 N 1.37101 * 119.99985 * 180.02562 * 7 2 1
10 10 C 1.34775 * 120.00255 * 179.97438 * 9 7 2
11 11 O 1.21297 * 119.99718 * 0.02562 * 10 9 7
12 12 C 1.50693 * 120.00075 * 179.97438 * 10 9 7
13 13 N 1.46897 * 109.47274 * 180.02562 * 12 10 9
14 14 C 1.46906 * 111.00285 * 179.97438 * 13 12 10
15 15 C 1.52995 * 109.47021 * 180.02562 * 14 13 12
16 16 H 1.08997 * 110.88863 * 51.12112 * 15 14 13
17 17 C 1.55163 * 111.03550 * 287.21557 * 15 14 13
18 18 C 1.54322 * 102.86241 * 206.21967 * 17 15 14
19 19 N 1.47025 * 107.27329 * 22.52622 * 18 17 15
20 20 C 1.34780 * 125.64322 * 180.97052 * 19 18 17
21 21 O 1.21282 * 119.99821 * 179.68892 * 20 19 18
22 22 C 1.50696 * 120.00176 * 359.69117 * 20 19 18
23 23 H 1.09006 * 110.60622 * 321.32698 * 22 20 19
24 24 C 1.54108 * 110.34148 * 84.22704 * 22 20 19
25 25 N 1.47049 * 103.86466 * 118.86941 * 24 22 20
26 26 C 1.33953 * 109.17955 * 359.60535 * 25 24 22
27 27 O 1.21586 * 123.04490 * 180.24458 * 26 25 24
28 28 N 1.33954 * 113.91376 * 0.26429 * 26 25 24
29 29 C 1.47425 * 108.70679 * 0.70428 * 19 18 17
30 30 H 0.96998 * 120.00262 * 0.02562 * 1 2 3
31 31 H 0.97001 * 119.99573 * 359.97438 * 9 7 2
32 32 H 1.08997 * 109.47414 * 60.00080 * 12 10 9
33 33 H 1.09003 * 109.47194 * 300.00574 * 12 10 9
34 34 H 1.00903 * 111.00112 * 56.05061 * 13 12 10
35 35 H 1.09003 * 109.46517 * 59.99856 * 14 13 12
36 36 H 1.09000 * 109.47313 * 300.00497 * 14 13 12
37 37 H 1.09003 * 110.72105 * 324.77261 * 17 15 14
38 38 H 1.08991 * 110.71947 * 87.87300 * 17 15 14
39 39 H 1.09001 * 109.98371 * 263.04889 * 18 17 15
40 40 H 1.08999 * 109.77369 * 141.88694 * 18 17 15
41 41 H 1.08996 * 110.65738 * 0.21732 * 24 22 20
42 42 H 1.09001 * 110.44046 * 237.41243 * 24 22 20
43 43 H 0.97001 * 125.41433 * 179.87691 * 25 24 22
44 44 H 0.96994 * 125.40890 * 179.97438 * 28 26 25
45 45 H 1.08995 * 110.36212 * 94.93560 * 29 19 18
46 46 H 1.08996 * 110.36655 * 217.26093 * 29 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2481 1.6178 0.0000
4 1 2.4955 2.0465 -1.4002
5 1 1.4454 2.6527 0.6999
6 1 3.5456 1.4403 0.7000
7 6 2.0089 -1.2033 -0.0005
8 1 1.4689 -2.1387 -0.0005
9 7 3.3799 -1.2033 0.0000
10 6 4.0538 -2.3705 0.0000
11 8 3.4473 -3.4209 -0.0009
12 6 5.5608 -2.3704 0.0000
13 7 6.0505 -3.7553 -0.0006
14 6 7.5190 -3.7945 -0.0013
15 6 7.9903 -5.2501 -0.0025
16 1 7.5016 -5.8161 -0.7955
17 6 7.7547 -5.9130 1.3804
18 6 8.8310 -7.0183 1.4194
19 7 9.8902 -6.6297 0.4767
20 6 11.0017 -7.3425 0.2068
21 8 11.8091 -6.9260 -0.5967
22 6 11.2414 -8.6572 0.9034
23 1 10.9256 -8.6025 1.9453
24 6 10.5057 -9.7947 0.1687
25 7 11.5858 -10.7006 -0.2495
26 6 12.7613 -10.1979 0.1503
27 8 13.8251 -10.7447 -0.0683
28 7 12.6588 -9.0383 0.8131
29 6 9.5320 -5.3343 -0.1292
30 1 -0.4850 0.8400 -0.0004
31 1 3.8648 -0.3632 0.0004
32 1 5.9241 -1.8566 0.8899
33 1 5.9241 -1.8565 -0.8900
34 1 5.6751 -4.2713 -0.7823
35 1 7.8962 -3.2908 0.8888
36 1 7.8956 -3.2902 -0.8912
37 1 7.9071 -5.1928 2.1843
38 1 6.7556 -6.3449 1.4357
39 1 8.3971 -7.9715 1.1172
40 1 9.2414 -7.0980 2.4260
41 1 9.9717 -9.4093 -0.6999
42 1 9.8198 -10.3040 0.8456
43 1 11.4665 -11.5285 -0.7406
44 1 13.4015 -8.5309 1.1761
45 1 10.0027 -4.5170 0.4171
46 1 9.8283 -5.3111 -1.1778
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001714361839.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:57:53
Heat of formation + Delta-G solvation = -106.029275 kcal
Electronic energy + Delta-G solvation = -28524.282188 eV
Core-core repulsion = 24255.067379 eV
Total energy + Delta-G solvation = -4269.214809 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 339.174 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-42.41866 -40.79241 -40.24218 -38.85584 -37.37248 -36.63467 -35.82547 -34.06119
-33.73577 -33.09704 -30.51318 -30.30472 -28.60350 -26.55243 -25.25567 -23.99806
-23.61522 -22.87261 -21.53662 -21.15524 -20.59780 -20.18945 -18.92388 -18.61435
-17.84248 -17.47114 -17.11299 -17.00065 -16.93570 -16.58559 -16.14703 -15.80947
-15.69849 -15.21240 -15.16044 -15.06400 -14.91630 -14.65063 -14.31589 -14.24982
-14.18729 -13.70463 -13.60863 -13.49376 -13.23181 -13.18180 -12.85104 -12.59937
-12.39319 -12.01408 -11.93993 -11.77055 -11.62378 -11.51682 -11.48424 -11.39016
-10.60152 -10.39718 -10.22379 -9.88427 -9.69452 -9.26609 -8.39368 -6.00064
1.31517 1.31997 1.37113 1.46158 1.59111 1.89818 1.99408 2.09192
2.24677 2.75330 2.99141 3.17682 3.25929 3.26870 3.42917 3.71299
3.84234 3.95405 3.98724 4.20426 4.29335 4.39389 4.42946 4.44735
4.54659 4.58073 4.61972 4.63724 4.65767 4.79621 4.85498 4.98027
5.10961 5.18524 5.38129 5.46492 5.54810 5.86630 5.93175 6.07691
6.16475 6.24279 6.41263 6.45258 6.62104 6.90791 6.98437 7.42920
7.47630 7.99502 8.78167
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.040634 B = 0.001580 C = 0.001546
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 688.915537 B =17720.237323 C =18109.539315
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.935 5.935
2 C -0.015 4.015
3 Si 0.964 3.036
4 H -0.259 1.259
5 H -0.277 1.277
6 H -0.229 1.229
7 C -0.328 4.328
8 H 0.056 0.944
9 N -0.593 5.593
10 C 0.449 3.551
11 O -0.613 6.613
12 C 0.062 3.938
13 N -0.679 5.679
14 C 0.072 3.928
15 C -0.091 4.091
16 H 0.082 0.918
17 C -0.115 4.115
18 C 0.090 3.910
19 N -0.608 5.608
20 C 0.514 3.486
21 O -0.578 6.578
22 C 0.111 3.889
23 H 0.159 0.841
24 C 0.104 3.896
25 N -0.730 5.730
26 C 0.695 3.305
27 O -0.639 6.639
28 N -0.715 5.715
29 C 0.112 3.888
30 H 0.278 0.722
31 H 0.389 0.611
32 H 0.114 0.886
33 H 0.074 0.926
34 H 0.344 0.656
35 H 0.087 0.913
36 H 0.040 0.960
37 H 0.080 0.920
38 H 0.085 0.915
39 H 0.097 0.903
40 H 0.098 0.902
41 H 0.088 0.912
42 H 0.142 0.858
43 H 0.440 0.560
44 H 0.434 0.566
45 H 0.077 0.923
46 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 22.894 -13.059 5.136 26.852
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.576 5.576
2 C -0.214 4.214
3 Si 0.784 3.216
4 H -0.184 1.184
5 H -0.202 1.202
6 H -0.153 1.153
7 C -0.458 4.458
8 H 0.074 0.926
9 N -0.234 5.234
10 C 0.237 3.763
11 O -0.497 6.497
12 C -0.070 4.070
13 N -0.312 5.312
14 C -0.057 4.057
15 C -0.110 4.110
16 H 0.101 0.899
17 C -0.152 4.152
18 C -0.031 4.031
19 N -0.341 5.341
20 C 0.301 3.699
21 O -0.458 6.458
22 C 0.001 3.999
23 H 0.176 0.824
24 C -0.020 4.020
25 N -0.393 5.393
26 C 0.393 3.607
27 O -0.521 6.521
28 N -0.376 5.376
29 C -0.011 4.011
30 H 0.088 0.912
31 H 0.225 0.775
32 H 0.132 0.868
33 H 0.092 0.908
34 H 0.162 0.838
35 H 0.105 0.895
36 H 0.058 0.942
37 H 0.099 0.901
38 H 0.104 0.896
39 H 0.115 0.885
40 H 0.117 0.883
41 H 0.107 0.893
42 H 0.160 0.840
43 H 0.284 0.716
44 H 0.277 0.723
45 H 0.095 0.905
46 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 23.233 -13.826 5.294 27.549
hybrid contribution 0.114 1.398 -1.280 1.899
sum 23.347 -12.428 4.015 26.752
Atomic orbital electron populations
1.69805 1.08152 1.29184 1.50434 1.26101 0.96436 1.02682 0.96145
0.85378 0.79578 0.76815 0.79824 1.18352 1.20224 1.15269 1.19014
0.81609 0.94892 1.50235 0.92583 1.42055 1.05765 1.07730 1.67900
1.21032 0.91105 0.83230 0.80952 1.90543 1.71435 1.32708 1.55033
1.21619 0.89314 0.92173 1.03937 1.60056 1.08049 1.11653 1.51408
1.21933 0.86179 0.95799 1.01783 1.22223 0.93190 0.96188 0.99432
0.89927 1.22585 0.99006 0.97374 0.96279 1.22503 0.87250 0.99709
0.93663 1.48556 1.20920 1.21508 1.43078 1.20922 0.80270 0.86397
0.82292 1.90763 1.46315 1.71841 1.36842 1.22143 0.82697 0.91589
1.03424 0.82405 1.22557 0.90254 0.88334 1.00874 1.45065 1.05433
1.27219 1.61559 1.16186 0.84493 0.81628 0.78377 1.90963 1.30509
1.65768 1.64812 1.44889 1.08762 1.23498 1.60475 1.22197 0.94707
0.85551 0.98634 0.91220 0.77513 0.86759 0.90797 0.83755 0.89473
0.94209 0.90089 0.89608 0.88459 0.88348 0.89335 0.83991 0.71608
0.72321 0.90514 0.91866
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -55.30 13.96 21.66 0.30 -55.00 16
2 C -0.02 -0.82 5.50 84.92 0.47 -0.35 16
3 Si 0.96 37.51 27.74 68.60 1.90 39.42 16
4 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16
5 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16
6 H -0.23 -7.39 6.52 99.48 0.65 -6.74 16
7 C -0.33 -18.66 10.16 84.04 0.85 -17.81 16
8 H 0.06 3.81 7.39 -2.91 -0.02 3.79 16
9 N -0.59 -26.58 5.09 -306.99 -1.56 -28.14 16
10 C 0.45 18.84 7.82 87.66 0.69 19.52 16
11 O -0.61 -31.94 15.78 -3.08 -0.05 -31.99 16
12 C 0.06 1.64 6.17 85.56 0.53 2.16 16
13 N -0.68 -15.98 6.07 -517.94 -3.15 -19.12 16
14 C 0.07 1.06 5.14 86.30 0.44 1.51 16
15 C -0.09 -1.08 3.19 -9.40 -0.03 -1.11 16
16 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16
17 C -0.11 -1.05 6.37 31.78 0.20 -0.85 16
18 C 0.09 0.37 6.26 86.73 0.54 0.92 16
19 N -0.61 -6.30 3.33 -811.79 -2.70 -9.00 16
20 C 0.51 7.36 6.94 87.66 0.61 7.97 16
21 O -0.58 -14.59 16.85 -3.04 -0.05 -14.64 16
22 C 0.11 0.83 3.59 44.51 0.16 0.99 16
23 H 0.16 -0.08 7.55 -2.38 -0.02 -0.10 16
24 C 0.10 0.46 7.69 86.65 0.67 1.12 16
25 N -0.73 -8.21 6.37 -477.33 -3.04 -11.26 16
26 C 0.69 13.94 8.92 179.57 1.60 15.55 16
27 O -0.64 -19.40 18.05 -3.99 -0.07 -19.47 16
28 N -0.72 -10.42 5.63 -460.32 -2.59 -13.01 16
29 C 0.11 1.41 6.38 86.86 0.55 1.97 16
30 H 0.28 15.06 8.31 -92.71 -0.77 14.29 16
31 H 0.39 14.32 5.76 -92.71 -0.53 13.79 16
32 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16
33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16
34 H 0.34 8.93 8.43 -89.69 -0.76 8.17 16
35 H 0.09 1.12 7.97 -2.39 -0.02 1.11 16
36 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16
37 H 0.08 0.77 7.92 -2.39 -0.02 0.75 16
38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16
39 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16
40 H 0.10 -0.01 7.95 -2.39 -0.02 -0.03 16
41 H 0.09 0.43 7.72 -2.39 -0.02 0.41 16
42 H 0.14 -0.52 8.14 -2.39 -0.02 -0.54 16
43 H 0.44 3.57 8.96 -92.71 -0.83 2.74 16
44 H 0.43 6.04 8.96 -92.71 -0.83 5.21 16
45 H 0.08 0.92 8.04 -2.39 -0.02 0.90 16
46 H 0.06 1.02 8.04 -2.39 -0.02 1.00 16
Total: -1.00 -92.58 383.70 -5.68 -98.26
By element:
Atomic # 1 Polarization: 34.33 SS G_CDS: -1.95 Total: 32.38 kcal
Atomic # 6 Polarization: 24.31 SS G_CDS: 7.28 Total: 31.59 kcal
Atomic # 7 Polarization: -122.80 SS G_CDS: -12.74 Total: -135.54 kcal
Atomic # 8 Polarization: -65.93 SS G_CDS: -0.17 Total: -66.11 kcal
Atomic # 14 Polarization: 37.51 SS G_CDS: 1.90 Total: 39.42 kcal
Total: -92.58 -5.68 -98.26 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001714361839.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.773 kcal
(2) G-P(sol) polarization free energy of solvation -92.577 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.350 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.679 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.256 kcal
(6) G-S(sol) free energy of system = (1) + (5) -106.029 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds