Wall clock time and date at job start Tue Mar 31 2020 22:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00191 * 2 1 4 4 H 1.48505 * 109.47089 * 270.00158 * 3 2 1 5 5 H 1.48494 * 109.47077 * 30.00263 * 3 2 1 6 6 H 1.48496 * 109.47089 * 150.00225 * 3 2 1 7 7 C 1.38810 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00337 * 179.97438 * 7 2 1 9 9 N 1.36947 * 119.99943 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99949 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.47252 * 34.99729 * 10 9 7 12 12 C 1.52995 * 109.47057 * 154.99503 * 10 9 7 13 13 N 1.46494 * 109.47520 * 305.00166 * 12 10 9 14 14 C 1.34779 * 120.00044 * 179.97438 * 13 12 10 15 15 O 1.21273 * 120.00280 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99657 * 180.02562 * 14 13 12 17 17 C 1.53000 * 109.46678 * 180.02562 * 16 14 13 18 18 C 1.50707 * 109.46899 * 180.02562 * 17 16 14 19 19 C 1.38227 * 119.62059 * 125.01804 * 18 17 16 20 20 C 1.38627 * 119.15702 * 179.74122 * 19 18 17 21 21 C 1.38669 * 118.42389 * 0.47826 * 20 19 18 22 22 C 1.38186 * 119.16143 * 359.49762 * 21 20 19 23 23 N 1.31856 * 119.61137 * 304.99234 * 18 17 16 24 24 C 1.50699 * 109.47169 * 274.99875 * 10 9 7 25 25 C 1.38233 * 120.00081 * 319.72876 * 24 10 9 26 26 C 1.38237 * 120.00143 * 179.78747 * 25 24 10 27 27 C 1.38236 * 119.99396 * 0.44308 * 26 25 24 28 28 C 1.38231 * 120.00491 * 359.80967 * 27 26 25 29 29 C 1.38232 * 119.99909 * 359.97438 * 28 27 26 30 30 H 0.97006 * 119.99811 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99862 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47110 * 184.99772 * 12 10 9 33 33 H 1.09003 * 109.46772 * 65.00457 * 12 10 9 34 34 H 0.97001 * 120.00288 * 0.02562 * 13 12 10 35 35 H 1.08995 * 109.47052 * 60.00215 * 16 14 13 36 36 H 1.09000 * 109.46920 * 299.99657 * 16 14 13 37 37 H 1.08995 * 109.47755 * 59.99971 * 17 16 14 38 38 H 1.08999 * 109.47059 * 299.99460 * 17 16 14 39 39 H 1.07998 * 120.41916 * 359.95342 * 19 18 17 40 40 H 1.08008 * 120.78688 * 180.22921 * 20 19 18 41 41 H 1.08002 * 120.42244 * 179.78279 * 21 20 19 42 42 H 1.07996 * 119.61757 * 180.25243 * 22 21 20 43 43 H 1.08006 * 119.99561 * 359.97438 * 25 24 10 44 44 H 1.07998 * 119.99808 * 180.26717 * 26 25 24 45 45 H 1.08001 * 119.99284 * 179.83656 * 27 26 25 46 46 H 1.07999 * 120.00169 * 180.02562 * 28 27 26 47 47 H 1.08002 * 120.00074 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0578 -3.6568 -0.0027 11 1 2.9686 -3.5512 0.5868 12 6 1.1807 -4.7526 0.6060 13 7 0.7341 -4.3372 1.9379 14 6 -0.0557 -5.1496 2.6678 15 8 -0.3964 -6.2248 2.2221 16 6 -0.5155 -4.7219 4.0377 17 6 -1.3926 -5.8178 4.6464 18 6 -1.8530 -5.3899 6.0162 19 6 -3.2039 -5.3720 6.3082 20 6 -3.6164 -4.9819 7.5729 21 6 -2.6510 -4.6131 8.4975 22 6 -1.3187 -4.6564 8.1336 23 7 -0.9623 -5.0373 6.9222 24 6 2.4162 -4.0287 -1.4185 25 6 1.5054 -3.8253 -2.4382 26 6 1.8358 -4.1624 -3.7375 27 6 3.0736 -4.7113 -4.0156 28 6 3.9825 -4.9196 -2.9951 29 6 3.6538 -4.5784 -1.6965 30 1 -0.4850 0.8401 0.0004 31 1 0.3554 -2.3881 -0.0016 32 1 1.7555 -5.6752 0.6869 33 1 0.3131 -4.9200 -0.0323 34 1 1.0062 -3.4770 2.2944 35 1 -1.0903 -3.7993 3.9564 36 1 0.3518 -4.5546 4.6763 37 1 -0.8176 -6.7402 4.7278 38 1 -2.2600 -5.9855 4.0080 39 1 -3.9286 -5.6616 5.5617 40 1 -4.6651 -4.9617 7.8306 41 1 -2.9365 -4.3003 9.4911 42 1 -0.5605 -4.3747 8.8492 43 1 0.5367 -3.4002 -2.2202 44 1 1.1257 -3.9994 -4.5348 45 1 3.3307 -4.9771 -5.0303 46 1 4.9497 -5.3481 -3.2125 47 1 4.3637 -4.7415 -0.8991 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714838646.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:14 Heat of formation + Delta-G solvation = 8.029117 kcal Electronic energy + Delta-G solvation = -27752.716358 eV Core-core repulsion = 23899.296756 eV Total energy + Delta-G solvation = -3853.419603 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.22863 -40.70282 -40.02436 -37.42572 -35.23115 -35.03557 -33.64205 -33.23479 -31.69819 -31.22564 -31.17253 -28.96327 -26.38176 -25.38162 -24.39053 -24.01374 -23.21510 -22.45344 -21.47144 -21.00936 -19.30865 -18.30793 -17.68595 -17.45474 -17.24657 -17.00747 -16.72897 -16.45127 -16.19416 -15.91857 -15.73808 -15.33786 -15.21957 -14.76990 -14.63803 -14.31585 -14.17056 -14.04291 -13.99140 -13.70366 -13.52564 -13.38508 -12.98044 -12.90879 -12.77618 -12.46472 -12.41800 -12.15739 -12.12990 -12.00777 -11.82817 -11.62693 -11.05796 -10.88554 -10.75120 -10.32596 -10.01987 -9.85859 -9.67397 -9.51964 -9.02987 -7.92074 -5.21284 0.20066 0.40705 0.59245 0.65242 1.48298 1.49959 1.56923 1.67864 2.28932 2.56592 2.89524 3.02761 3.35866 3.42720 3.73254 3.81253 3.91533 4.05999 4.08804 4.16370 4.17998 4.19005 4.24950 4.29312 4.34478 4.38256 4.39391 4.42661 4.64157 4.72881 4.76543 4.80128 4.85968 4.87345 4.96487 5.04596 5.10612 5.23591 5.30564 5.31166 5.31930 5.49498 5.55818 5.70003 5.73840 5.84369 5.94586 6.25801 6.29008 6.60905 7.09533 7.26857 7.36369 8.03915 8.30886 9.30008 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009807 B = 0.002655 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.514773 B =10544.226794 C =12636.892544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.062 4.062 3 Si 0.961 3.039 4 H -0.296 1.296 5 H -0.298 1.298 6 H -0.269 1.269 7 C -0.230 4.230 8 H 0.073 0.927 9 N -0.718 5.718 10 C 0.204 3.796 11 H 0.070 0.930 12 C 0.132 3.868 13 N -0.712 5.712 14 C 0.512 3.488 15 O -0.586 6.586 16 C -0.120 4.120 17 C -0.045 4.045 18 C 0.111 3.889 19 C -0.178 4.178 20 C -0.077 4.077 21 C -0.177 4.177 22 C 0.085 3.915 23 N -0.510 5.510 24 C -0.102 4.102 25 C -0.110 4.110 26 C -0.137 4.137 27 C -0.131 4.131 28 C -0.126 4.126 29 C -0.127 4.127 30 H 0.249 0.751 31 H 0.375 0.625 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.411 0.589 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.148 0.852 40 H 0.162 0.838 41 H 0.163 0.837 42 H 0.175 0.825 43 H 0.095 0.905 44 H 0.128 0.872 45 H 0.144 0.856 46 H 0.147 0.853 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.501 -11.654 10.523 15.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.255 4.255 3 Si 0.792 3.208 4 H -0.224 1.224 5 H -0.225 1.225 6 H -0.194 1.194 7 C -0.362 4.362 8 H 0.091 0.909 9 N -0.357 5.357 10 C 0.095 3.905 11 H 0.088 0.912 12 C 0.007 3.993 13 N -0.363 5.363 14 C 0.300 3.700 15 O -0.467 6.467 16 C -0.160 4.160 17 C -0.083 4.083 18 C -0.025 4.025 19 C -0.198 4.198 20 C -0.102 4.102 21 C -0.196 4.196 22 C -0.072 4.072 23 N -0.221 5.221 24 C -0.105 4.105 25 C -0.129 4.129 26 C -0.155 4.155 27 C -0.149 4.149 28 C -0.144 4.144 29 C -0.146 4.146 30 H 0.058 0.942 31 H 0.208 0.792 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.248 0.752 35 H 0.114 0.886 36 H 0.126 0.874 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.166 0.834 40 H 0.180 0.820 41 H 0.181 0.819 42 H 0.192 0.808 43 H 0.114 0.886 44 H 0.146 0.854 45 H 0.162 0.838 46 H 0.165 0.835 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.706 -12.288 10.016 15.868 hybrid contribution -0.939 1.717 0.028 1.957 sum -1.645 -10.571 10.043 14.674 Atomic orbital electron populations 1.69795 1.06315 1.25772 1.59409 1.25341 0.96088 1.00341 1.03757 0.85323 0.78015 0.80531 0.76965 1.22375 1.22484 1.19387 1.19458 0.91185 0.84723 1.40816 0.90874 1.42474 1.05247 1.00008 1.88008 1.19539 0.94807 0.85164 0.91022 0.91239 1.21394 0.97704 0.96968 0.83207 1.46002 1.50865 1.22015 1.17455 1.21075 0.77383 0.83756 0.87792 1.90638 1.58264 1.24137 1.73639 1.21473 1.02179 1.00407 0.91926 1.20163 1.00228 0.97770 0.90179 1.21298 0.90525 0.95543 0.95184 1.22259 0.96376 1.02006 0.99112 1.22002 1.01785 0.94084 0.92365 1.22500 0.93789 1.01099 1.02226 1.23233 0.96510 0.94781 0.92674 1.67428 1.39726 1.11810 1.03086 1.20884 0.94774 0.97527 0.97331 1.20948 0.99400 0.98917 0.93614 1.21345 0.98098 0.99884 0.96142 1.21390 0.93516 0.99675 1.00311 1.21410 1.00335 1.00199 0.92423 1.21281 0.95944 0.99390 0.97949 0.94213 0.79219 0.90553 0.93384 0.75219 0.88607 0.87412 0.90295 0.89539 0.83405 0.82020 0.81892 0.80830 0.88641 0.85429 0.83792 0.83538 0.84842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.03 13.06 21.65 0.28 -55.75 16 2 C -0.06 -3.39 5.50 84.86 0.47 -2.92 16 3 Si 0.96 44.73 29.55 68.60 2.03 46.76 16 4 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 5 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.23 -11.85 9.92 84.03 0.83 -11.02 16 8 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 9 N -0.72 -32.96 3.81 -326.51 -1.24 -34.20 16 10 C 0.20 7.59 2.64 44.24 0.12 7.71 16 11 H 0.07 2.52 7.94 -2.39 -0.02 2.50 16 12 C 0.13 4.58 5.21 86.38 0.45 5.03 16 13 N -0.71 -23.70 5.39 -463.08 -2.49 -26.20 16 14 C 0.51 16.80 7.83 87.66 0.69 17.48 16 15 O -0.59 -22.51 15.98 -3.01 -0.05 -22.56 16 16 C -0.12 -3.19 5.56 29.85 0.17 -3.03 16 17 C -0.05 -1.12 4.90 29.85 0.15 -0.97 16 18 C 0.11 2.60 6.18 42.55 0.26 2.86 16 19 C -0.18 -3.33 9.71 22.36 0.22 -3.11 16 20 C -0.08 -1.11 10.18 22.47 0.23 -0.89 16 21 C -0.18 -2.48 10.11 22.36 0.23 -2.25 16 22 C 0.08 1.55 11.18 84.67 0.95 2.49 16 23 N -0.51 -12.32 9.88 -183.88 -1.82 -14.14 16 24 C -0.10 -3.67 4.92 -19.87 -0.10 -3.77 16 25 C -0.11 -4.16 9.32 22.27 0.21 -3.95 16 26 C -0.14 -4.33 10.05 22.27 0.22 -4.11 16 27 C -0.13 -3.51 10.05 22.27 0.22 -3.29 16 28 C -0.13 -3.31 10.05 22.27 0.22 -3.08 16 29 C -0.13 -3.85 9.67 22.27 0.22 -3.63 16 30 H 0.25 14.28 8.31 -92.70 -0.77 13.51 16 31 H 0.38 18.95 7.80 -92.71 -0.72 18.23 16 32 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.41 13.78 8.14 -92.71 -0.75 13.02 16 35 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.11 2.75 7.95 -2.39 -0.02 2.73 16 37 H 0.08 2.09 8.10 -2.39 -0.02 2.07 16 38 H 0.09 2.09 7.83 -2.39 -0.02 2.07 16 39 H 0.15 2.25 7.95 -2.91 -0.02 2.23 16 40 H 0.16 1.34 8.06 -2.91 -0.02 1.31 16 41 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 42 H 0.17 2.23 8.06 -2.91 -0.02 2.20 16 43 H 0.10 4.02 7.73 -2.91 -0.02 4.00 16 44 H 0.13 3.54 8.06 -2.91 -0.02 3.51 16 45 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 46 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 47 H 0.13 3.44 8.04 -2.91 -0.02 3.42 16 Total: -1.00 -68.06 402.34 1.96 -66.11 By element: Atomic # 1 Polarization: 50.91 SS G_CDS: -0.49 Total: 50.42 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 5.74 Total: -10.44 kcal Atomic # 7 Polarization: -125.01 SS G_CDS: -5.27 Total: -130.28 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.05 Total: -22.56 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -68.06 1.96 -66.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714838646.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.135 kcal (2) G-P(sol) polarization free energy of solvation -68.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds